pycom03g09030

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002189
Physical Location & Seq
Reverse (-)
7501479 .. 7503794
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGCCTCAGATTCCCTTTGACTTGGTCTTTGACAAAGAATTCGAGCTCTCTCACAACTTGAAAAGCGGGAGTGTCCACTTTTGTGGTTATAAAACTTACATTCCGACGAGGACCAATCTGTTTGATAGTGAATCAGAAGAGGATCTCCCACTGAATTTTACTGGCAATGGTAACATTGTTGAAGCAAAGCCAGCTCCACCCAAGACTAAAGCTGTCAAACCAGAATCTTCTGGAAAGCAGAAGGTTAAGATTGAAGAGCCAATTAAGGATGAGGATGATTCTGATGACTCAGATGAAGATGATTCTGATGATGATGATGAAAGTTCTGATGAGGACATGCTTGGAGCTGATAGTAGTGATGAAGATGATGAGGACAGTGAGAAAGAAGAGGACACCCCAACGCCTAAGAAGGACTCCAAGAAAAGGCCCAATGAGTCTGCCCCAAAAACTCCTGTCTCTGCTAAGAAGGCAAAGCAAGTTACTCCACAGAAGACTGATGGAAAGAAGGGTGCCCACACTGCAACACCACACCCTGCAAAGAAGGGCGGAAAGACTCCACAAACACCCAATTCTGCTGGCGGCGATCACTCTTTTTGCTGCTGGTTTTTATGTATTGTGCTGCTTGTTGCAGGTCATTTAACTCTGATGGTGCTCTTTCGTCTCACAACAAGGCCAAGCACGGCGCTAAGTAGAATGAGAGGGACGTGCGGAAGCGTTGCACGCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.44

Weight (kDa)

4.96

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YL1 PF05764 90 - 228 8.1e-07 YL1 nuclear protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 620
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 4 cut(s) 66, 546, 579, 708
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 2 cut(s) 38, 154
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 3 cut(s) 61, 182, 254
AjiI CACGTC 1 cut(s) 705
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 4 cut(s) 46, 194, 212, 347
AluI AGCT 4 cut(s) 46, 194, 212, 347
Alw21I GWGCWC 2 cut(s) 48, 654
Alw26I GTCTC 2 cut(s) 460, 665
AlwI GGATC 1 cut(s) 150
AoxI GGCC 2 cut(s) 425, 671
ApeKI GCWGC 2 cut(s) 597, 619
ApoI RAATTY 2 cut(s) 38, 154
ArsI GACNNNNNNTTYG 4 cut(s) 11, 23, 43, 55
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 111, 426
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 2 cut(s) 48, 654
BbvI GCAGC 2 cut(s) 584, 606
BccI CCATC 2 cut(s) 491, 640
BceAI ACGGC 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 460, 665
BfoI RGCGCY 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 620
BisI GCNGC 3 cut(s) 580, 598, 620
BlsI GCNGC 3 cut(s) 581, 599, 621
Bme18I GGWCC 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 111, 426
BmiI GGNNCC 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 497
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 172
BseGI GGATG 2 cut(s) 274, 280
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 20, 303
BseNI ACTGG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 2 cut(s) 584, 606
BshFI GGCC 2 cut(s) 427, 673
BshNI GGYRCC 1 cut(s) 509
BsiHKAI GWGCWC 2 cut(s) 48, 654
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 2 cut(s) 460, 665
BsmBI CGTCTC 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 2 cut(s) 427, 673
Bsp1286I GDGCHC 3 cut(s) 48, 514, 654
Bsp143I GATC 2 cut(s) 142, 583
BspACI CCGC 4 cut(s) 66, 546, 579, 708
BspANI GGCC 2 cut(s) 427, 673
BspCNI CTCAG 2 cut(s) 19, 302
BspLI GGNNCC 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 620
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 166
BssMI GATC 2 cut(s) 142, 583
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 3 cut(s) 132, 249, 381
BstC8I GCNNGC 3 cut(s) 192, 577, 721
BstDEI CTNAG 5 cut(s) 6, 289, 405, 462, 686
BstF5I GGATG 2 cut(s) 274, 280
BstH2I RGCGCY 1 cut(s) 686
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 2 cut(s) 145, 586
BstMAI GTCTC 2 cut(s) 460, 665
BstMBI GATC 2 cut(s) 142, 583
BstMWI GCNNNNNNNGC 4 cut(s) 191, 467, 518, 720
BstNSI RCATGY 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 514
BstV1I GCAGC 2 cut(s) 584, 606
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 2 cut(s) 427, 673
BtrI CACGTC 1 cut(s) 705
BtsCI GGATG 2 cut(s) 274, 280
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 3 cut(s) 149, 382, 516
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 3 cut(s) 192, 577, 721
CfoI GCGC 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 111, 426
CviAII CATG 1 cut(s) 337
CviJI RGCY 8 cut(s) 46, 190, 194, 212, 259, 347, 427, 673
CviKI_1 RGCY 8 cut(s) 46, 190, 194, 212, 259, 347, 427, 673
DdeI CTNAG 5 cut(s) 6, 289, 405, 462, 686
DpnI GATC 2 cut(s) 144, 585
DpnII GATC 2 cut(s) 142, 583
Eam1104I CTCTTC 3 cut(s) 132, 249, 381
EarI CTCTTC 3 cut(s) 132, 249, 381
EciI GGCGGA 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 1 cut(s) 340
FaiI YATR 4 cut(s) 90, 338, 610, 727
FaqI GGGAC 1 cut(s) 715
FatI CATG 1 cut(s) 336
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 580, 598, 620
FokI GGATG 2 cut(s) 281, 287
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 3 cut(s) 580, 598, 620
GlaI GCGC 1 cut(s) 684
GluI GCNGC 3 cut(s) 580, 598, 620
HaeII RGCGCY 1 cut(s) 686
HaeIII GGCC 2 cut(s) 427, 673
HhaI GCGC 1 cut(s) 685
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HinfI GANTC 9 cut(s) 10, 131, 224, 278, 287, 302, 413, 434, 553
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 8 cut(s) 9, 105, 136, 283, 292, 307, 328, 645
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 5 cut(s) 235, 403, 460, 499, 535
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 704
HpyCH4V TGCA 4 cut(s) 521, 536, 629, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 467, 518, 720
HpyF3I CTNAG 5 cut(s) 6, 289, 405, 462, 686
HpySE526I ACGT 1 cut(s) 704
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 1 cut(s) 683
Kzo9I GATC 2 cut(s) 142, 583
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 199, 344
LpnPI CCDG 9 cut(s) 147, 204, 216, 234, 465, 546, 561, 586, 615
Lsp1109I GCAGC 2 cut(s) 584, 606
MaeII ACGT 1 cut(s) 704
MaeIII GTNAC 2 cut(s) 170, 478
MalI GATC 2 cut(s) 144, 585
MboI GATC 2 cut(s) 142, 583
MboII GAAGA 7 cut(s) 149, 219, 266, 308, 374, 398, 502
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 3 cut(s) 48, 514, 654
MluCI AATT 4 cut(s) 38, 154, 261, 568
MlyI GAGTC 4 cut(s) 281, 407, 443, 547
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 8 cut(s) 15, 102, 133, 265, 325, 364, 382, 692
MseI TTAA 3 cut(s) 246, 264, 638
MslI CAYNNNNRTG 2 cut(s) 81, 724
MwoI GCNNNNNNNGC 4 cut(s) 191, 467, 518, 720
NdeII GATC 2 cut(s) 142, 583
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 511
NspI RCATGY 1 cut(s) 340
OliI CACNNNNGTG 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 5 cut(s) 10, 131, 224, 278, 302
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 3 cut(s) 581, 599, 621
PleI GAGTC 4 cut(s) 281, 407, 442, 547
PpsI GAGTC 4 cut(s) 281, 407, 442, 547
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 2 cut(s) 111, 426
PsuI RGATCY 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 23
RseI CAYNNNNRTG 2 cut(s) 81, 724
SacI GAGCTC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 246, 264, 638
SatI GCNGC 3 cut(s) 580, 598, 620
Sau3AI GATC 2 cut(s) 142, 583
Sau96I GGNCC 2 cut(s) 111, 426
SchI GAGTC 4 cut(s) 281, 407, 443, 547
SduI GDGCHC 3 cut(s) 48, 514, 654
SetI ASST 7 cut(s) 48, 196, 214, 246, 349, 634, 707
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 81, 724
Sse9I AATT 4 cut(s) 38, 154, 261, 568
SsiI CCGC 4 cut(s) 66, 546, 579, 708
SstI GAGCTC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 707
TaqI TCGA 1 cut(s) 42
TasI AATT 4 cut(s) 38, 154, 261, 568
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 5 cut(s) 10, 131, 224, 278, 302
Tru1I TTAA 3 cut(s) 246, 264, 638
Tru9I TTAA 3 cut(s) 246, 264, 638
TscAI CASTG 3 cut(s) 156, 382, 523
TseI GCWGC 2 cut(s) 597, 619
TspDTI ATGAA 3 cut(s) 309, 333, 375
TspRI CASTG 3 cut(s) 156, 382, 523
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 2 cut(s) 38, 154
XceI RCATGY 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.