Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002695

Physical Location & Seq

Genomic Coordinates Forward (+)

20104371 .. 20106595

Gene Structure 2225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAACAAAAATTTTTTTGGCTTGTAACGTCGCCTTTTTATGATGGGACATCGTTCCTGAATGGGGATCATAAAAGAAAATTGAAGGAAGAATTTGGAATTGAGCCATGGTCCTTTGAACAACATTTGGGGCAAGCTGTTTTTATCCCCGCTGGATGCCCTTTTCAAGTCAGGAATCTTCAGTCAACTGTTCAGCTGGGTCTTGATTTCTCATCTCCTGAAAGCCTCGGTGAGGCTGTAAGACTAGCTGATGAAATTCGGTGTCTTCCAAATGACCATGAAGCAAAGCTACAAGTGTTGGAGGTTGGACAAGGGAAAATTTCCTTAGAAGTAGGAAAGATATCACTTTATGCGGCGAGTTCAGCCATTAAAGAGATTCAGAAGTTGGTACTCGATCCAAAACTTGGTGCAGAACTTGGATTTGAAGATCCAAATTTGACCGCTGCAGTTTCTGAGAATTTGGAGAAAATGATGACACGAAGACGGGTAACTTGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

167

Amino Acids

18.51

Weight (kDa)

5.67

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjC	PF02373	20 - 66	3.9e-08	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002695)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g17910 pycom07g08170
rosa_chinensis	RchiOBHm_Chr2g0164361 RchiOBHm_Chr5g0025851 RchiOBHm_Chr7g0188301
rosa_laevigata	RLG00000008807 RLG00000012371 RLG00000012376 RLG00000023114 RLG00000026781
rosa_multiflora	Rmu_sc0000650.1_g000022 Rmu_sc0003936.1_g000028
rosa_roxburghii	Rroxscaffold_2G00127760 Rroxscaffold_2G00128620 Rroxscaffold_5G00371280 Rroxscaffold_5G00372980 Rroxscaffold_7G00180250
rosa_rugosa	Rorug02G0200000 Rorug02G0200100 Rorug03G0054500 Rorug04G0056600 Rorug06G0006900 Rorug06G0062200
rosa_samantha	Rh1AG047100 Rh1BG199800 Rh1BG210600 Rh1CG223100 Rh1DG227600 Rh2BG283100 Rh3DG073700 Rh5AG386600 Rh5AG529200 Rh5DG179300 Rh6DG124400 Rh7AG502700 Rh7BG306100 Rh7BG375400 Rh7BG474000 Rh7DG359700
rosa_wichuraiana	Rw1G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	3 cut(s)	150, 353, 441
AclWI	GGATC	3 cut(s)	75, 389, 422
AcsI	RAATTY	6 cut(s)	11, 92, 255, 318, 433, 457
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	64, 232, 404
AgsI	TTSAA	4 cut(s)	85, 119, 167, 425
AluBI	AGCT	4 cut(s)	137, 196, 248, 289
AluI	AGCT	4 cut(s)	137, 196, 248, 289
AlwI	GGATC	3 cut(s)	75, 389, 422
AlwNI	CAGNNNCTG	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	6 cut(s)	11, 92, 255, 318, 433, 457
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbsI	GAAGAC	2 cut(s)	257, 487
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	354, 444
BlsI	GCNGC	2 cut(s)	355, 445
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	257, 487
BsaJI	CCNNGG	2 cut(s)	107, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 232, 404
BseDI	CCNNGG	2 cut(s)	107, 226
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	64, 232, 404
BseMII	CTCAG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	430
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	64, 232, 404
BsmFI	GGGAC	1 cut(s)	61
Bsp143I	GATC	3 cut(s)	67, 394, 427
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	3 cut(s)	150, 353, 441
BspCNI	CTCAG	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	3 cut(s)	75, 389, 422
BssECI	CCNNGG	2 cut(s)	107, 226
BssMI	GATC	3 cut(s)	67, 394, 427
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	325, 453
BstDSI	CCRYGG	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	3 cut(s)	70, 397, 430
BstMBI	GATC	3 cut(s)	67, 394, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	2 cut(s)	257, 487
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	2 cut(s)	108, 278
CviJI	RGCY	9 cut(s)	22, 106, 137, 196, 225, 236, 248, 289, 365
CviKI_1	RGCY	9 cut(s)	22, 106, 137, 196, 225, 236, 248, 289, 365
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	325, 453
DpnI	GATC	3 cut(s)	69, 396, 429
DpnII	GATC	3 cut(s)	67, 394, 427
Eco130I	CCWWGG	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	111, 281
FaiI	YATR	5 cut(s)	42, 72, 109, 279, 351
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	107, 277
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	354, 444
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	354, 444
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	2 cut(s)	354, 444
GsaI	CCCAGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	111, 281
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	175, 376
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	381, 454
Hpy188III	TCNNGA	4 cut(s)	58, 172, 203, 218
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	410, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	325, 453
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	111, 281
HspAI	GCGC	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	67, 394, 427
LpnPI	CCDG	5 cut(s)	71, 138, 157, 182, 231
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	25, 487
MalI	GATC	3 cut(s)	69, 396, 429
MboI	GATC	3 cut(s)	67, 394, 427
MboII	GAAGA	5 cut(s)	101, 170, 257, 437, 492
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	8 cut(s)	11, 80, 92, 99, 255, 318, 433, 457
MmeI	TCCRAC	2 cut(s)	279, 286
MnlI	CCTC	3 cut(s)	226, 236, 295
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	3 cut(s)	152, 196, 443
MwoI	GCNNNNNNNGC	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	107
NdeII	GATC	3 cut(s)	67, 394, 427
NlaIII	CATG	2 cut(s)	111, 281
PfeI	GAWTC	2 cut(s)	175, 376
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	355, 445
PspFI	CCCAGC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	354, 444
Sau3AI	GATC	3 cut(s)	67, 394, 427
Sau96I	GGNCC	1 cut(s)	111
SetI	ASST	6 cut(s)	32, 139, 198, 250, 291, 306
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	111
Sse9I	AATT	8 cut(s)	11, 80, 92, 99, 255, 318, 433, 457
SsiI	CCGC	3 cut(s)	150, 353, 441
SspMI	CTAG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	393
TasI	AATT	8 cut(s)	11, 80, 92, 99, 255, 318, 433, 457
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	2 cut(s)	175, 376
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	17, 267, 294
Van91I	CCANNNNNTGG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	6 cut(s)	11, 92, 255, 318, 433, 457
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.