Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

3716258 .. 3720281

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGTGGGCTTTGAATTTCGGTCTTTTAGGGTTCCTTTTCTGTTTATACGATTGGGTTTTAAATTTTTCTGTCCAAGAAACCCTTCATGTTGCTTGTGAATTAGAATTCTCATGTGTGCATTTTCAGTGTGGGAGTATGAGTAGCTTGGTGGAGAGGCTTCGCGTTAGGTCAGACCGAAGACCGGTGTACAACATTGATGAGTCAGATGATGAGGCTGATTTTGTGTCTGGAAAACGTGGGACAGCTCCGGAAAAGTTTGAAAAGATTATTAGGAGTGATGCGAAAGAGAATTCATGTCAAGCCTGTGGCGGAAGTGGGAATCTTCTGGACTGTGAAACTTGTAGTTATGCTTACCATTCTAAGTGTTTACTTCCACCATTGAGATCGCCTCCCCTTGGCAACTGGAGGTGCCCTGAATGTGTAAGCCCATTAAATGATATTGATAAGATTTTGGACTGTGAAATGCGCCCTACTGTAGCTGGTGATAGTGATGCCTCAACGCTGGGCTCAAAGCAAATTTTTGTAAAACAATATCTTGTAAAGTGGAAGGGACTATCTTATTTGCATTGCACATGGGTTCCAGAGAAGGAGTTTGTGAAAGCTTTTAAGGCCCATCCACGTTTGAAGACAAAAGTAAATAATTTCCATCGTCAAATGGAATCAAGTAATAACTCTGAGGATGATTTTGTTGCCATTCGACCTGAGTGGACTACCGTTGATCGAATTCTGGCTTGCAGGGAAGACGATGAGAAAGAATATTTAGTAAAGTGGAAAGAACTTCCCTATGATGAGTGCTATTGGGAATCCGAATCGGACATAGCTGCATTTCAGCCGGAAATAGGGAGATTCAACAGAATTCAGTCTAGGTCTCATAAAGTTTTGTCTAGCAAGCAGAAGAGCAGTCTTAGAGATGCCATGGACTCAAAAAATAAGCAGAAAGAGTTTCAACAGTATGAAGGCAGTCCTGACTTTCTTTCTGGAGGCACTCTGCATCCGTATCAGCTTGAAGGGTTGAACTTCTTACGTTTCTCCTGGTCCAAACAAACTCATGTTATACTTGCAGATGAGATGGGACTTGGTAAAACTATACAGAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAAAGTCTCTCCGCATCTAGTTGTGGCTCCACTTTCAACATTGAGAAATTGGGAACGGGAATTTGCAACATGGGCACCTCAAATGAATGTGGTTATGTATGTTGGCTCTTCCCAAGCGCGTGCTGTCATACGGGAATATGAATTTTACTTCCCCAAAAATCACAAGAAGATAAAGAAAAAGAAATCTGGTCAAATTGTTAGTGAAACCAAGCAAGATCGATCAAATTTGATGTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

455

Amino Acids

52.29

Weight (kDa)

6.83

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD-1st_NSD	PF23011	94 - 140	1e-05	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	99 - 140	2.4e-08	PHD-finger
Chromo	PF00385	160 - 201	3.3e-09	Chromo (CHRromatin Organisation MOdifier) domain
Chromo	PF00385	238 - 284	2.5e-14	Chromo (CHRromatin Organisation MOdifier) domain
SNF2-rel_dom	PF00176	333 - 420	1.5e-24	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	408, 1198
AccII	CGCG	2 cut(s)	162, 1243
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	2 cut(s)	309, 1136
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	181, 395, 839
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	9 cut(s)	13, 260, 625, 850, 947, 1007, 1015, 1121, 1161
AjnI	CCWGG	1 cut(s)	1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	6 cut(s)	144, 245, 479, 602, 821, 1003
AluI	AGCT	6 cut(s)	144, 245, 479, 602, 821, 1003
Alw26I	GTCTC	2 cut(s)	873, 1135
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	821
AsiGI	ACCGGT	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	468, 1243
AspS9I	GGNCC	2 cut(s)	610, 1035
AsuHPI	GGTGA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	1035
BaeGI	GKGCMC	2 cut(s)	413, 1201
BanI	GGYRCC	2 cut(s)	408, 1198
BanII	GRGCYC	1 cut(s)	509
BbsI	GAAGAC	3 cut(s)	184, 632, 747
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	3 cut(s)	621, 654, 1063
BciT130I	CCWGG	1 cut(s)	1033
BcoDI	GTCTC	2 cut(s)	873, 1135
BfaI	CTAG	3 cut(s)	864, 885, 1142
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	822
BlsI	GCNGC	1 cut(s)	823
Bme1390I	CCNGG	1 cut(s)	1033
Bme18I	GGWCC	1 cut(s)	1035
BmgT120I	GGNCC	2 cut(s)	610, 1035
BmiI	GGNNCC	5 cut(s)	32, 410, 579, 1152, 1200
BmrFI	CCNGG	1 cut(s)	1033
BmsI	GCATC	6 cut(s)	268, 481, 901, 1000, 1118, 1147
BpiI	GAAGAC	3 cut(s)	184, 632, 747
BplI	GAGNNNNNCTC	4 cut(s)	373, 405, 1115, 1147
BpmI	CTGGAG	2 cut(s)	424, 999
Bsa29I	ATCGAT	1 cut(s)	1342
BsaI	GGTCTC	1 cut(s)	873
BsaJI	CCNNGG	2 cut(s)	394, 915
BsaWI	WCCGGW	2 cut(s)	181, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 395, 839
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	565
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	1033
BseCI	ATCGAT	1 cut(s)	1342
BseDI	CCNNGG	2 cut(s)	394, 915
BseGI	GGATG	3 cut(s)	613, 685, 991
BseLI	CCNNNNNNNGG	3 cut(s)	181, 395, 839
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	666, 693
BseNI	ACTGG	1 cut(s)	407
BseSI	GKGCMC	2 cut(s)	413, 1201
BseXI	GCAGC	1 cut(s)	808
BseYI	CCCAGC	1 cut(s)	502
Bsh1236I	CGCG	2 cut(s)	162, 1243
BshFI	GGCC	1 cut(s)	611
BshNI	GGYRCC	2 cut(s)	408, 1198
BshTI	ACCGGT	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	1342
BsiSI	CCGG	3 cut(s)	182, 248, 833
BslFI	GGGAC	3 cut(s)	253, 564, 1086
BslI	CCNNNNNNNGG	3 cut(s)	181, 395, 839
BsmAI	GTCTC	2 cut(s)	873, 1135
BsmFI	GGGAC	3 cut(s)	253, 564, 1086
BsnI	GGCC	1 cut(s)	611
Bso31I	GGTCTC	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	413, 509, 1201
Bsp13I	TCCGGA	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	383, 718, 1339, 1343
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	2 cut(s)	309, 1136
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	2 cut(s)	667, 694
BspDI	ATCGAT	1 cut(s)	1342
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	162, 1243
BspLI	GGNNCC	5 cut(s)	32, 410, 579, 1152, 1200
BspQI	GCTCTTC	2 cut(s)	890, 1237
BspT107I	GGYRCC	2 cut(s)	408, 1198
BspTNI	GGTCTC	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	394, 915
BssMI	GATC	4 cut(s)	383, 718, 1339, 1343
BssT1I	CCWWGG	2 cut(s)	394, 915
Bst2UI	CCWGG	1 cut(s)	1033
Bst4CI	ACNGT	5 cut(s)	332, 458, 475, 715, 951
Bst6I	CTCTTC	3 cut(s)	890, 1116, 1237
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	733, 890, 1245
BstDEI	CTNAG	4 cut(s)	360, 675, 702, 905
BstDSI	CCRYGG	1 cut(s)	915
BstF5I	GGATG	3 cut(s)	613, 685, 991
BstFNI	CGCG	2 cut(s)	162, 1243
BstHHI	GCGC	2 cut(s)	468, 1243
BstKTI	GATC	4 cut(s)	386, 721, 1342, 1346
BstMAI	GTCTC	2 cut(s)	873, 1135
BstMBI	GATC	4 cut(s)	383, 718, 1339, 1343
BstMWI	GCNNNNNNNGC	3 cut(s)	608, 1106, 1196
BstNI	CCWGG	1 cut(s)	1033
BstSCI	CCNGG	1 cut(s)	1031
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	2 cut(s)	413, 1201
BstUI	CGCG	2 cut(s)	162, 1243
BstV1I	GCAGC	1 cut(s)	808
BstV2I	GAAGAC	3 cut(s)	184, 632, 747
Bsu15I	ATCGAT	1 cut(s)	1342
BsuRI	GGCC	1 cut(s)	611
BsuTUI	ATCGAT	1 cut(s)	1342
BtgI	CCRYGG	1 cut(s)	915
BtsCI	GGATG	3 cut(s)	613, 685, 991
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	733, 890, 1245
CfoI	GCGC	2 cut(s)	468, 1243
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	610, 1035
ClaI	ATCGAT	1 cut(s)	1342
Csp6I	GTAC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	181
CviAII	CATG	7 cut(s)	86, 111, 294, 573, 916, 1049, 1194
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	360, 675, 702, 905
DpnI	GATC	4 cut(s)	385, 720, 1341, 1345
DpnII	GATC	4 cut(s)	383, 718, 1339, 1343
DraI	TTTAAA	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	890, 1116, 1237
EarI	CTCTTC	3 cut(s)	890, 1116, 1237
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	394, 915
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	1035
EcoRI	GAATTC	4 cut(s)	104, 289, 723, 855
EcoRII	CCWGG	1 cut(s)	1031
EcoT14I	CCWWGG	2 cut(s)	394, 915
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	394, 915
FaeI	CATG	7 cut(s)	89, 114, 297, 576, 919, 1052, 1197
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	3 cut(s)	253, 564, 1086
FatI	CATG	7 cut(s)	85, 110, 293, 572, 915, 1048, 1193
Fnu4HI	GCNGC	1 cut(s)	822
FokI	GGATG	3 cut(s)	600, 692, 978
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	822
FspBI	CTAG	3 cut(s)	864, 885, 1142
GlaI	GCGC	2 cut(s)	467, 1242
GluI	GCNGC	1 cut(s)	822
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	2 cut(s)	424, 999
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	3 cut(s)	182, 248, 833
HhaI	GCGC	2 cut(s)	468, 1243
Hin1II	CATG	7 cut(s)	89, 114, 297, 576, 919, 1052, 1197
Hin6I	GCGC	2 cut(s)	466, 1241
HinP1I	GCGC	2 cut(s)	466, 1241
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	7 cut(s)	200, 319, 659, 803, 809, 846, 920
HpaII	CCGG	3 cut(s)	182, 248, 833
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	3 cut(s)	187, 368, 708
Hpy188I	TCNGA	5 cut(s)	172, 205, 676, 808, 814
Hpy188III	TCNNGA	7 cut(s)	228, 248, 326, 581, 965, 978, 1362
Hpy8I	GTNNAC	3 cut(s)	187, 368, 708
HpyAV	CCTTC	5 cut(s)	92, 541, 580, 950, 1001
HpyCH4III	ACNGT	5 cut(s)	332, 458, 475, 715, 951
HpyCH4IV	ACGT	3 cut(s)	235, 619, 1024
HpyCH4V	TGCA	8 cut(s)	118, 565, 570, 735, 824, 991, 1061, 1190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	608, 1106, 1196
HpyF3I	CTNAG	4 cut(s)	360, 675, 702, 905
HpySE526I	ACGT	3 cut(s)	235, 619, 1024
Hsp92II	CATG	7 cut(s)	89, 114, 297, 576, 919, 1052, 1197
HspAI	GCGC	2 cut(s)	466, 1241
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	383, 718, 1339, 1343
LguI	GCTCTTC	2 cut(s)	890, 1237
LmnI	GCTCC	2 cut(s)	250, 1156
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	6 cut(s)	268, 481, 901, 1000, 1118, 1147
MaeI	CTAG	3 cut(s)	864, 885, 1142
MaeII	ACGT	3 cut(s)	235, 619, 1024
MalI	GATC	4 cut(s)	385, 720, 1341, 1345
MboI	GATC	4 cut(s)	383, 718, 1339, 1343
MboII	GAAGA	8 cut(s)	189, 314, 637, 752, 907, 1133, 1224, 1303
MhlI	GDGCHC	3 cut(s)	413, 509, 1201
MlyI	GAGTC	2 cut(s)	209, 914
MnlI	CCTC	8 cut(s)	147, 205, 399, 399, 505, 670, 974, 1212
MroI	TCCGGA	1 cut(s)	247
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	3 cut(s)	59, 431, 606
MspI	CCGG	3 cut(s)	182, 248, 833
MspR9I	CCNGG	1 cut(s)	1033
MvaI	CCWGG	1 cut(s)	1033
MvnI	CGCG	2 cut(s)	162, 1243
MwoI	GCNNNNNNNGC	3 cut(s)	608, 1106, 1196
NcoI	CCATGG	1 cut(s)	915
NdeII	GATC	4 cut(s)	383, 718, 1339, 1343
NlaIII	CATG	7 cut(s)	89, 114, 297, 576, 919, 1052, 1197
NlaIV	GGNNCC	5 cut(s)	32, 410, 579, 1152, 1200
PciSI	GCTCTTC	2 cut(s)	890, 1237
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	5 cut(s)	319, 659, 803, 809, 846
PinAI	ACCGGT	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	823
PleI	GAGTC	2 cut(s)	208, 914
PpsI	GAGTC	2 cut(s)	208, 914
Psp6I	CCWGG	1 cut(s)	1031
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	1031
PspN4I	GGNNCC	5 cut(s)	32, 410, 579, 1152, 1200
PspPI	GGNCC	2 cut(s)	610, 1035
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SapI	GCTCTTC	2 cut(s)	890, 1237
SaqAI	TTAA	3 cut(s)	59, 431, 606
SatI	GCNGC	1 cut(s)	822
Sau3AI	GATC	4 cut(s)	383, 718, 1339, 1343
Sau96I	GGNCC	2 cut(s)	610, 1035
SchI	GAGTC	2 cut(s)	209, 914
ScrFI	CCNGG	1 cut(s)	1033
SduI	GDGCHC	3 cut(s)	413, 509, 1201
SfaNI	GCATC	6 cut(s)	268, 481, 901, 1000, 1118, 1147
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	1035
SsiI	CCGC	2 cut(s)	309, 1136
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	3 cut(s)	864, 885, 1142
StyD4I	CCNGG	1 cut(s)	1031
StyI	CCWWGG	2 cut(s)	394, 915
TaaI	ACNGT	5 cut(s)	332, 458, 475, 715, 951
TaiI	ACGT	3 cut(s)	238, 622, 1027
TaqI	TCGA	3 cut(s)	697, 721, 1342
TaqII	GACCGA	2 cut(s)	8, 189
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	5 cut(s)	319, 659, 803, 809, 846
Tru1I	TTAA	3 cut(s)	59, 431, 606
Tru9I	TTAA	3 cut(s)	59, 431, 606
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	1 cut(s)	821
TspDTI	ATGAA	5 cut(s)	74, 282, 969, 1223, 1278
TspGWI	ACGGA	1 cut(s)	984
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	1035
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	3 cut(s)	864, 885, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.