Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002228

Physical Location & Seq

Genomic Coordinates Forward (+)

3720341 .. 3730774

Gene Structure 10434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGATTGTTGATGAAGGTCATCGTCTAAAAAATAAGGATTCAAAATTATTCTCATCATTACAGCAGTATTGGACTAATCATCGTGTGCTTCTGACCGGAACTCCCCTCCAGAACAATCTGGACGAGCTCTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTCGGAAGTCTGGAAGAGTTTCAGGAAGAGTTTAAGGATATAAATCAAGAGGAACAAGTTTCACGGCTTCATAGAATGTTGGCTCCCCATCTCCTTAGAAGAGTGAAAAAGGATGTGATGAAGGAACTACCTCCTAAAAAGGAACTGATATTACGTGTTGATTTAAGCAGCAAACAGAAAGAGTATTACAAAGCAATTCTGACCCGTAACTATCAAATACTAACTCGTCGAGGTGGTGCACAGATATCTCTTATCAATGTGGTTATGGAATTGCGCAAGCTTTGTTGTCATCCGTTTATGTTAGAGGGAGTTGAACCAGACATAGCAGATCCAAATGAAGCTTTCAAACAGCTATTGGAAACTTCTGGGAAATTGCAATTGTTAGACAAAATGATGGTGAAACTTAAGGAGCAAGGGCATAGAGTTCTCATATATTCGCAGTTTCAGCACATGCTTGATTTGCTAGAAGACTATTGTACTTTCAAAAAATGGCAGTATGAACGGATAGATGGAAAAGTTGGTGGAGCTGAGAGACAAATAAGAATAGATCGATTTAATGCCAAAAATTCTTCTAGATTTTGTTTTCTGCTATCTACTCGAGCTGGGGGCTTAGGAATAAACCTTGCAACTGCAGACACAGTGATCATATATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCAAGAGCTCATCGACTTGGGCAAACTAACAAGGTAATGATTTATAGGCTAGTAACCCGAGGAAGCATTGAAGAACGGATGATGGAAATGACAAAGAAGAAAATGGTATTGGAGCATTTGGTTGTTGGAAGGTTAAAGAAACAAGATATAAACCAGGAAGAGTTAGATGACATCATAAGGTATGGATCGAAGGAATTATTTGCTGACGAAAATGATGAAGCAGGAAAATCCCGTCAAATCCATTATGATGACGCTGCAATAGATAGAAATACTACTGACACAGATCGTGATCAAGCTGGCGATGATGAGGCTATGTTGGATGATGAAGATGAAGATGGATTTTTAAAGGCCTTCAAGGTTGCGAATTTTGAATATATTGATGAAGCAGAGGCTGTAGCAGAGGAGGAACCACAAAAGGTTGCCATGGAAAGTCGACCTATTGCAAGCAGTTATGAAAGAACAAATTACTGGGAAGAGTTATTAAAAGACAAATATGAAGTGCATAAAGTTGAAGAATTTAATGCTTTGGGAAAAGGAAAGCGAAGTCGTAAGCAGATGGTATCTGTTGATGATGACGATCTTGCTGGTTTGGAAGATGTGAGTTCTGACGGTGAAGATGATAACTATGAAGCTGAAGTGATGGAAGCTGAAACATCATCATCCGGAACTGTTTCTGGGGGGAAGAGGCCGCCTAACAGAAAGAGAAGTCGTGTGGAAAGTATGGAGCCCCCTCCCTTGATGGAAGGAGAAGGAAGATCCTTCAAAGTTTTGGGTTTCAATCAAAGCCAGAGAGCCATGTTTGTACAAGTCTTGATGAGGTTCGGAGTGGGGGATTATGACTGGAAAGAGTTTACAGCACGCACGAAGAAGACATTTGAAGAAGTAGATAGATATGCTAAACTATTCTTGGAGCACATAGCTGAAGGAGAGAATGACTCTCCAACCTTTGCAGATGGTGTTCCTAAAGACGGGCTCAGAATAGGAGATGTACTTATTAGGGTTGCAACTCTGATGCTGGTGAAGAAAAGGGTGGAAGCAGCATTAAGAAATCCAGGGGCTCCACTTTTTTCAGAGGGTACCTTGTTGTTCCACCCTGGATTGAAGGGTGGAAAGTATTGGAAGGAGGAACATGATTTAACATTGCTGCGTGCCGTAATTAAGCATGGATATGGAAGATGGCAAGCTATTGTTGATGACAAGGACCTGAGGCTTCAAGAAGTTATCTGTCAAGAGTTGAATCTCTCCTTTATAAATTTACCCCTCCCTGGACAAGTTAATACACAAGCACAGAATGGTGAGAAAGCAACTAATGGAGAAGGACCTAGCAACCATGCTAGTGAAAATGGTAGCGGAAGTGACATAGGAGCTAATGTTTCCCAGGGAACCAGTGATGCCGTGAACCAACCTCAGTTGTTTCCTAACTCTTCTGTGTTATTTCAATATAGAGATATGCAGAGAAGGCAGGTAGAATTTATTAAGAAAAGGGTGCTTCTTTTGGAGAAAGGGAACGTTTCAGAGTTGATTGCAGAGGAATATGGTGAAGCAACTGTGGTTGGAAGTGAAGAACCTGAGAGTGAACCGAAAGCTACAATATTGTCAAGCCCTCATTCTGTGGAGACTAATAGTCACATGGTTGATCAGTTGCCTAGAATAGTAGACATCACTCCTGAAGAAGTTGCTGCTGCAGCTTGTGACAACGATCCAGATCGATTGAAATTGCCTCGCCTTTATAATGAGATGTGCAACGTCGTGGAGCGAAATGCCCATATTTCACTTCAGACTTCTTTAGGAACCATTTGTGAAGCGATAAACATGACTCTCTCTTCTGTGCCCCATCATCCTCCACCAGAATCTCTCATTTTGAATCCAGGTAAGCAATCGGAAGCTGAGTCAAGTAGCGGTGTTTTTCTGAAACCACCATCTCCGCAAAGTGACGGAAAGCAAGCTGTCGTGGCAGACACTGAGATGACAAATTTGGCTGCAGAACCTGAACCTACAATTATGGAGCTAGACCCTGAACCCGTGGACGGGATAATCTGTGATGATCGGGGAAAGAAAGAACAGAACAATGTCGATTCTAAAGGAAAGGGGGTCATTGTATTGGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

988

Amino Acids

111.45

Weight (kDa)

5.12

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	1 - 154	2.7e-45	SNF2-related domain
HDA2-3	PF11496	105 - 320	7.2e-11	Class II histone deacetylase complex subunits 2 and 3
Helicase_C	PF00271	178 - 291	1.3e-24	Helicase conserved C-terminal domain
DUF1087	PF06465	417 - 477	7.2e-25	CHD subfamily II, DUF1087
CHDII_SANT-like	PF06461	513 - 642	5.2e-48	CHD subfamily II, SANT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25170 AT2G25170 AT2G25170 AT2G25170 AT4G31900 AT4G31900 AT4G31900
fragaria_vesca	FvH4_2g40920
malus_domestica	MD08G1058800.v1.1 MD15G1037700.v1.1
prunus_persica	Prupe.1G391600_v2.0.a1
pyrus_communis	pycom08g04860 pycom08g04870 pycom15g03490
rosa_chinensis	RchiOBHm_Chr3g0455421 RchiOBHm_Chr6g0299661
rosa_laevigata	RLG00000011399 RLG00000025364
rosa_multiflora	Rmu_co8019708.1_g000001 Rmu_co8099568.1_g000001 Rmu_sc0022216.1_g000002 Rmu_sc0024261.1_g000001 Rmu_sc0024262.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424300 Rroxscaffold_7G00168470
rosa_rugosa	Rorug03G0007200 Rorug03G0007300 Rorug03G0007400 Rorug04G0013500 Rorug06G0291400
rosa_samantha	Rh3AG066700 Rh3BG069100 Rh3CG067500 Rh3DG069000 Rh5AG515500 Rh6AG402100 Rh6BG410600 Rh6CG416300 Rh6CG416400 Rh6DG403500
rosa_wichuraiana	Rw2G021110 Rw3G005270 Rw6G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2102, 2583
Acc16I	TGCGCA	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	2305
Acc65I	GGTACC	1 cut(s)	1928
AccB1I	GGYRCC	1 cut(s)	1928
AccI	GTMKAC	2 cut(s)	1285, 2508
AccIII	TCCGGA	1 cut(s)	1514
AciI	CCGC	4 cut(s)	1541, 2202, 2751, 2777
AclI	AACGTT	1 cut(s)	2361
AclWI	GGATC	4 cut(s)	485, 1045, 1602, 2546
AcsI	RAATTY	6 cut(s)	727, 1216, 1367, 2104, 2321, 2824
AcuI	CTGAAG	4 cut(s)	1506, 1794, 2541, 2612
AfaI	GTAC	4 cut(s)	640, 1656, 1842, 1930
AfiI	CCNNNNNNNGG	4 cut(s)	1820, 2117, 2879, 2880
AflII	CTTAAG	1 cut(s)	566
AflIII	ACRYGT	1 cut(s)	316
AhdI	GACNNNNNGTC	1 cut(s)	2475
AjnI	CCWGG	6 cut(s)	1005, 1903, 1945, 2116, 2229, 2719
AjuI	GAANNNNNNNTTGG	2 cut(s)	944, 976
Alw21I	GWGCWC	4 cut(s)	129, 403, 862, 1767
Alw26I	GTCTC	2 cut(s)	688, 2462
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	4 cut(s)	485, 1045, 1602, 2546
AlwNI	CAGNNNCTG	3 cut(s)	1244, 2813, 2840
Ama87I	CYCGRG	2 cut(s)	759, 909
Aor13HI	TCCGGA	1 cut(s)	1514
AoxI	GGCC	2 cut(s)	1200, 1538
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	8 cut(s)	330, 1106, 1889, 1996, 2531, 2534, 2537, 2831
ApoI	RAATTY	6 cut(s)	727, 1216, 1367, 2104, 2321, 2824
Asp700I	GAANNNNTTC	2 cut(s)	180, 1522
Asp718I	GGTACC	1 cut(s)	1928
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	2053, 2171
AsuHPI	GGTGA	5 cut(s)	571, 1475, 1882, 2159, 2402
AvaI	CYCGRG	2 cut(s)	759, 909
AvaII	GGWCC	2 cut(s)	2053, 2171
AxyI	CCTNAGG	1 cut(s)	2057
BaeGI	GKGCMC	2 cut(s)	403, 2685
BanI	GGYRCC	1 cut(s)	1928
BanII	GRGCYC	5 cut(s)	129, 862, 1581, 1827, 1912
BbsI	GAAGAC	2 cut(s)	636, 1727
Bbv12I	GWGCWC	4 cut(s)	129, 403, 862, 1767
BbvI	GCAGC	8 cut(s)	342, 1093, 1901, 1983, 2518, 2521, 2549, 2818
BceAI	ACGGC	3 cut(s)	242, 1988, 2231
BciT130I	CCWGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
BclI	TGATCA	3 cut(s)	804, 1141, 2488
BcoDI	GTCTC	2 cut(s)	688, 2462
BfaI	CTAG	7 cut(s)	626, 735, 902, 2175, 2187, 2499, 2861
BfmI	CTRYAG	4 cut(s)	792, 1245, 2535, 2832
BfrI	CTTAAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	2305
BisI	GCNGC	9 cut(s)	331, 1107, 1541, 1890, 1997, 2532, 2535, 2538, 2832
BlsI	GCNGC	9 cut(s)	332, 1108, 1542, 1891, 1998, 2533, 2536, 2539, 2833
Bme1390I	CCNGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
Bme18I	GGWCC	2 cut(s)	2053, 2171
BmeRI	GACNNNNNGTC	1 cut(s)	2475
BmeT110I	CYCGRG	2 cut(s)	759, 909
BmgT120I	GGNCC	2 cut(s)	2053, 2171
BmiI	GGNNCC	7 cut(s)	246, 1260, 1578, 1911, 1930, 2236, 2644
BmrFI	CCNGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
BmrI	ACTGGG	1 cut(s)	1330
BmsI	GCATC	3 cut(s)	142, 1854, 2233
BmuI	ACTGGG	1 cut(s)	1330
BpiI	GAAGAC	2 cut(s)	636, 1727
BplI	GAGNNNNNCTC	2 cut(s)	1772, 1804
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	772
Bsa29I	ATCGAT	2 cut(s)	712, 2560
BsaAI	YACGTR	1 cut(s)	317
BsaBI	GATNNNNATC	5 cut(s)	204, 825, 1140, 1428, 2556
BsaJI	CCNNGG	8 cut(s)	910, 1275, 1904, 1945, 2116, 2229, 2230, 2874
BsaWI	WCCGGW	2 cut(s)	95, 1514
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 2208, 2238
Bsc4I	CCNNNNNNNGG	4 cut(s)	1820, 2117, 2879, 2880
Bse1I	ACTGG	3 cut(s)	1325, 1697, 2238
Bse21I	CCTNAGG	1 cut(s)	2057
Bse3DI	GCAATG	1 cut(s)	1991
Bse8I	GATNNNNATC	5 cut(s)	204, 825, 1140, 1428, 2556
BseAI	TCCGGA	1 cut(s)	1514
BseBI	CCWGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
BseCI	ATCGAT	2 cut(s)	712, 2560
BseDI	CCNNGG	8 cut(s)	910, 1275, 1904, 1945, 2116, 2229, 2230, 2874
BseGI	GGATG	7 cut(s)	280, 451, 936, 1177, 1511, 2689, 2962
BseJI	GATNNNNATC	5 cut(s)	204, 825, 1140, 1428, 2556
BseLI	CCNNNNNNNGG	4 cut(s)	1820, 2117, 2879, 2880
BseMI	GCAATG	1 cut(s)	1991
BseMII	CTCAG	7 cut(s)	681, 1840, 2048, 2273, 2412, 2730, 2805
BseNI	ACTGG	3 cut(s)	1325, 1697, 2238
BseRI	GAGGAG	1 cut(s)	1268
BseSI	GKGCMC	2 cut(s)	403, 2685
BseXI	GCAGC	8 cut(s)	342, 1093, 1901, 1983, 2518, 2521, 2549, 2818
BseYI	CCCAGC	2 cut(s)	155, 764
BshFI	GGCC	2 cut(s)	1202, 1540
BshNI	GGYRCC	1 cut(s)	1928
BshVI	ATCGAT	2 cut(s)	712, 2560
BsiHKAI	GWGCWC	4 cut(s)	129, 403, 862, 1767
BsiHKCI	CYCGRG	2 cut(s)	759, 909
BsiSI	CCGG	2 cut(s)	96, 1515
BslI	CCNNNNNNNGG	4 cut(s)	1820, 2117, 2879, 2880
BsmAI	GTCTC	2 cut(s)	688, 2462
BsnI	GGCC	2 cut(s)	1202, 1540
BsoBI	CYCGRG	2 cut(s)	759, 909
Bsp1286I	GDGCHC	8 cut(s)	129, 403, 862, 1581, 1767, 1827, 1912, 2685
Bsp13I	TCCGGA	1 cut(s)	1514
Bsp1407I	TGTACA	1 cut(s)	1654
Bsp19I	CCATGG	1 cut(s)	1275
BspACI	CCGC	4 cut(s)	1541, 2202, 2751, 2777
BspANI	GGCC	2 cut(s)	1202, 1540
BspCNI	CTCAG	7 cut(s)	682, 1839, 2049, 2272, 2413, 2731, 2806
BspDI	ATCGAT	2 cut(s)	712, 2560
BspEI	TCCGGA	1 cut(s)	1514
BspLI	GGNNCC	7 cut(s)	246, 1260, 1578, 1911, 1930, 2236, 2644
BspMAI	CTGCAG	3 cut(s)	796, 2539, 2836
BspMI	ACCTGC	1 cut(s)	2305
BspPI	GGATC	4 cut(s)	485, 1045, 1602, 2546
BspT107I	GGYRCC	1 cut(s)	1928
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	1991
BsrGI	TGTACA	1 cut(s)	1654
BsrI	ACTGG	3 cut(s)	1325, 1697, 2238
BssECI	CCNNGG	8 cut(s)	910, 1275, 1904, 1945, 2116, 2229, 2230, 2874
BssT1I	CCWWGG	1 cut(s)	1275
Bst2UI	CCWGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
Bst4CI	ACNGT	4 cut(s)	802, 1463, 1522, 2401
Bst6I	CTCTTC	8 cut(s)	171, 183, 256, 1005, 1320, 1529, 2281, 2680
BstAFI	CTTAAG	1 cut(s)	566
BstAUI	TGTACA	1 cut(s)	1654
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	7 cut(s)	440, 1150, 1297, 1711, 2001, 2034, 2796
BstDEI	CTNAG	9 cut(s)	257, 690, 772, 1826, 2057, 2259, 2421, 2739, 2814
BstDSI	CCRYGG	2 cut(s)	1275, 2874
BstF5I	GGATG	7 cut(s)	280, 451, 936, 1177, 1511, 2689, 2962
BstHHI	GCGC	1 cut(s)	438
BstMAI	GTCTC	2 cut(s)	688, 2462
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 607, 622, 2311, 2537, 2804
BstNI	CCWGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	6 cut(s)	1005, 1903, 1945, 2116, 2229, 2719
BstSFI	CTRYAG	4 cut(s)	792, 1245, 2535, 2832
BstSLI	GKGCMC	2 cut(s)	403, 2685
BstV1I	GCAGC	8 cut(s)	342, 1093, 1901, 1983, 2518, 2521, 2549, 2818
BstV2I	GAAGAC	2 cut(s)	636, 1727
BstX2I	RGATCY	2 cut(s)	490, 1607
BstYI	RGATCY	2 cut(s)	490, 1607
Bsu15I	ATCGAT	2 cut(s)	712, 2560
Bsu36I	CCTNAGG	1 cut(s)	2057
BsuRI	GGCC	2 cut(s)	1202, 1540
BsuTUI	ATCGAT	2 cut(s)	712, 2560
BtgI	CCRYGG	2 cut(s)	1275, 2874
BtgZI	GCGATG	1 cut(s)	1167
BtsCI	GGATG	7 cut(s)	280, 451, 936, 1177, 1511, 2689, 2962
BtsIMutI	CAGTG	3 cut(s)	807, 2245, 2811
BveI	ACCTGC	1 cut(s)	2305
Cac8I	GCNNGC	7 cut(s)	440, 1150, 1297, 1711, 2001, 2034, 2796
CaiI	CAGNNNCTG	3 cut(s)	1244, 2813, 2840
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	2053, 2171
ClaI	ATCGAT	2 cut(s)	712, 2560
CseI	GACGC	1 cut(s)	1112
Csp6I	GTAC	4 cut(s)	639, 1655, 1841, 1929
CviAII	CATG	9 cut(s)	613, 833, 1276, 1648, 1982, 2015, 2183, 2482, 2665
CviQI	GTAC	4 cut(s)	639, 1655, 1841, 1929
DdeI	CTNAG	9 cut(s)	257, 690, 772, 1826, 2057, 2259, 2421, 2739, 2814
DraI	TTTAAA	1 cut(s)	1197
DriI	GACNNNNNGTC	1 cut(s)	2475
Eam1104I	CTCTTC	8 cut(s)	171, 183, 256, 1005, 1320, 1529, 2281, 2680
Eam1105I	GACNNNNNGTC	1 cut(s)	2475
EarI	CTCTTC	8 cut(s)	171, 183, 256, 1005, 1320, 1529, 2281, 2680
Ecl136II	GAGCTC	2 cut(s)	127, 860
Eco130I	CCWWGG	1 cut(s)	1275
Eco147I	AGGCCT	1 cut(s)	1202
Eco24I	GRGCYC	5 cut(s)	129, 862, 1581, 1827, 1912
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	2053, 2171
Eco53kI	GAGCTC	2 cut(s)	127, 860
Eco57I	CTGAAG	4 cut(s)	1506, 1794, 2541, 2612
Eco81I	CCTNAGG	1 cut(s)	2057
Eco88I	CYCGRG	2 cut(s)	759, 909
EcoICRI	GAGCTC	2 cut(s)	127, 860
EcoO109I	RGGNCCY	2 cut(s)	2053, 2171
EcoRII	CCWGG	6 cut(s)	1005, 1903, 1945, 2116, 2229, 2719
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	1275
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	5 cut(s)	129, 862, 1581, 1827, 1912
ErhI	CCWWGG	1 cut(s)	1275
FaeI	CATG	9 cut(s)	616, 836, 1279, 1651, 1985, 2018, 2186, 2485, 2668
FatI	CATG	9 cut(s)	612, 832, 1275, 1647, 1981, 2014, 2182, 2481, 2664
FbaI	TGATCA	3 cut(s)	804, 1141, 2488
FblI	GTMKAC	2 cut(s)	1285, 2508
Fnu4HI	GCNGC	9 cut(s)	331, 1107, 1541, 1890, 1997, 2532, 2535, 2538, 2832
FokI	GGATG	6 cut(s)	287, 438, 943, 1184, 1498, 2676
FriOI	GRGCYC	5 cut(s)	129, 862, 1581, 1827, 1912
Fsp4HI	GCNGC	9 cut(s)	331, 1107, 1541, 1890, 1997, 2532, 2535, 2538, 2832
FspBI	CTAG	7 cut(s)	626, 735, 902, 2175, 2187, 2499, 2861
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	9 cut(s)	331, 1107, 1541, 1890, 1997, 2532, 2535, 2538, 2832
GsaI	CCCAGC	2 cut(s)	159, 768
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	1202, 1540
HapII	CCGG	2 cut(s)	96, 1515
HgaI	GACGC	1 cut(s)	1112
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	9 cut(s)	616, 836, 1279, 1651, 1985, 2018, 2186, 2485, 2668
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	1286
HindII	GTYRAC	1 cut(s)	1286
HindIII	AAGCTT	2 cut(s)	440, 501
HinfI	GANTC	9 cut(s)	38, 826, 1787, 2089, 2668, 2702, 2716, 2741, 2927
HpaII	CCGG	2 cut(s)	96, 1515
HphI	GGTGA	5 cut(s)	571, 1475, 1882, 2159, 2402
Hpy166II	GTNNAC	7 cut(s)	401, 1286, 1704, 2251, 2429, 2509, 2878
Hpy8I	GTNNAC	7 cut(s)	401, 1286, 1704, 2251, 2429, 2509, 2878
Hpy99I	CGWCG	2 cut(s)	393, 2603
HpyCH4III	ACNGT	4 cut(s)	802, 1463, 1522, 2401
HpyCH4IV	ACGT	3 cut(s)	316, 2361, 2598
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 607, 622, 2311, 2537, 2804
HpyF3I	CTNAG	9 cut(s)	257, 690, 772, 1826, 2057, 2259, 2421, 2739, 2814
HpySE526I	ACGT	3 cut(s)	316, 2361, 2598
Hsp92II	CATG	9 cut(s)	616, 836, 1279, 1651, 1985, 2018, 2186, 2485, 2668
HspAI	GCGC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	1514
KpnI	GGTACC	1 cut(s)	1932
Ksp22I	TGATCA	3 cut(s)	804, 1141, 2488
Lsp1109I	GCAGC	8 cut(s)	342, 1093, 1901, 1983, 2518, 2521, 2549, 2818
LweI	GCATC	3 cut(s)	142, 1854, 2233
MaeI	CTAG	7 cut(s)	626, 735, 902, 2175, 2187, 2499, 2861
MaeII	ACGT	3 cut(s)	316, 2361, 2598
MaeIII	GTNAC	6 cut(s)	368, 904, 2207, 2477, 2543, 2783
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	2 cut(s)	490, 1607
MhlI	GDGCHC	8 cut(s)	129, 403, 862, 1581, 1767, 1827, 1912, 2685
MlyI	GAGTC	3 cut(s)	1781, 2662, 2750
MmeI	TCCRAC	4 cut(s)	958, 1149, 1817, 2386
Mph1103I	ATGCAT	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	1514
MroXI	GAANNNNTTC	2 cut(s)	180, 1522
MslI	CAYNNNNRTG	4 cut(s)	1098, 2019, 2187, 2816
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	2 cut(s)	96, 1515
MspR9I	CCNGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
MwoI	GCNNNNNNNGC	6 cut(s)	133, 607, 622, 2311, 2537, 2804
NcoI	CCATGG	1 cut(s)	1275
NlaIII	CATG	9 cut(s)	616, 836, 1279, 1651, 1985, 2018, 2186, 2485, 2668
NlaIV	GGNNCC	7 cut(s)	246, 1260, 1578, 1911, 1930, 2236, 2644
NmuCI	GTSAC	4 cut(s)	2207, 2477, 2543, 2783
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	1 cut(s)	616
PaeR7I	CTCGAG	1 cut(s)	759
PasI	CCCWGGG	1 cut(s)	2230
PceI	AGGCCT	1 cut(s)	1202
PdmI	GAANNNNTTC	2 cut(s)	180, 1522
PfeI	GAWTC	6 cut(s)	38, 826, 2089, 2702, 2716, 2927
PkrI	GCNGC	9 cut(s)	332, 1108, 1542, 1891, 1998, 2533, 2536, 2539, 2833
PleI	GAGTC	3 cut(s)	1781, 2662, 2749
PpsI	GAGTC	3 cut(s)	1781, 2662, 2749
Ppu21I	YACGTR	1 cut(s)	317
PpuMI	RGGWCCY	2 cut(s)	2053, 2171
PsiI	TTATAA	2 cut(s)	2102, 2583
Psp124BI	GAGCTC	2 cut(s)	129, 862
Psp1406I	AACGTT	1 cut(s)	2361
Psp5II	RGGWCCY	2 cut(s)	2053, 2171
Psp6I	CCWGG	6 cut(s)	1005, 1903, 1945, 2116, 2229, 2719
PspFI	CCCAGC	2 cut(s)	155, 764
PspGI	CCWGG	6 cut(s)	1005, 1903, 1945, 2116, 2229, 2719
PspN4I	GGNNCC	7 cut(s)	246, 1260, 1578, 1911, 1930, 2236, 2644
PspPI	GGNCC	2 cut(s)	2053, 2171
PspPPI	RGGWCCY	2 cut(s)	2053, 2171
PspXI	VCTCGAGB	1 cut(s)	759
PsrI	GAACNNNNNNTAC	2 cut(s)	297, 329
PstI	CTGCAG	3 cut(s)	796, 2539, 2836
PstNI	CAGNNNCTG	3 cut(s)	1244, 2813, 2840
PsuI	RGATCY	2 cut(s)	490, 1607
RsaI	GTAC	4 cut(s)	640, 1656, 1842, 1930
RsaNI	GTAC	4 cut(s)	639, 1655, 1841, 1929
RseI	CAYNNNNRTG	4 cut(s)	1098, 2019, 2187, 2816
SacI	GAGCTC	2 cut(s)	129, 862
SalI	GTCGAC	1 cut(s)	1284
SatI	GCNGC	9 cut(s)	331, 1107, 1541, 1890, 1997, 2532, 2535, 2538, 2832
Sau96I	GGNCC	2 cut(s)	2053, 2171
SchI	GAGTC	3 cut(s)	1781, 2662, 2750
ScrFI	CCNGG	6 cut(s)	1007, 1905, 1947, 2118, 2231, 2721
SduI	GDGCHC	8 cut(s)	129, 403, 862, 1581, 1767, 1827, 1912, 2685
SfaNI	GCATC	3 cut(s)	142, 1854, 2233
SfcI	CTRYAG	4 cut(s)	792, 1245, 2535, 2832
Sfr274I	CTCGAG	1 cut(s)	759
SinI	GGWCC	2 cut(s)	2053, 2171
SlaI	CTCGAG	1 cut(s)	759
SmiMI	CAYNNNNRTG	4 cut(s)	1098, 2019, 2187, 2816
SmlI	CTYRAG	2 cut(s)	566, 759
SmoI	CTYRAG	2 cut(s)	566, 759
SseBI	AGGCCT	1 cut(s)	1202
SsiI	CCGC	4 cut(s)	1541, 2202, 2751, 2777
SspI	AATATT	1 cut(s)	2445
SspMI	CTAG	7 cut(s)	626, 735, 902, 2175, 2187, 2499, 2861
SstI	GAGCTC	2 cut(s)	129, 862
StuI	AGGCCT	1 cut(s)	1202
StyD4I	CCNGG	6 cut(s)	1005, 1903, 1945, 2116, 2229, 2719
StyI	CCWWGG	1 cut(s)	1275
TaaI	ACNGT	4 cut(s)	802, 1463, 1522, 2401
TaiI	ACGT	3 cut(s)	319, 2364, 2601
TaqI	TCGA	8 cut(s)	391, 712, 760, 865, 1040, 1285, 2560, 2925
TatI	WGTACW	3 cut(s)	638, 1654, 1840
TauI	GCSGC	1 cut(s)	1543
TfiI	GAWTC	6 cut(s)	38, 826, 2089, 2702, 2716, 2927
TscAI	CASTG	3 cut(s)	807, 2245, 2818
TseFI	GTSAC	4 cut(s)	2207, 2477, 2543, 2783
TseI	GCWGC	8 cut(s)	330, 1106, 1889, 1996, 2531, 2534, 2537, 2831
Tsp45I	GTSAC	4 cut(s)	2207, 2477, 2543, 2783
TspGWI	ACGGA	4 cut(s)	444, 679, 943, 2802
TspRI	CASTG	3 cut(s)	807, 2245, 2818
Vha464I	CTTAAG	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	2053, 2171
XapI	RAATTY	6 cut(s)	727, 1216, 1367, 2104, 2321, 2824
XbaI	TCTAGA	1 cut(s)	734
XceI	RCATGY	1 cut(s)	616
XhoI	CTCGAG	1 cut(s)	759
XmiI	GTMKAC	2 cut(s)	1285, 2508
XmnI	GAANNNNTTC	2 cut(s)	180, 1522
XspI	CTAG	7 cut(s)	626, 735, 902, 2175, 2187, 2499, 2861
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.