Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002601

Physical Location & Seq

Genomic Coordinates Forward (+)

620774 .. 638959

Gene Structure 18186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4521 bp

ATGGGAAGCAGGTCGTCATTGGCAGGCATGGAGGTCCCAATCATCGGCAGCGATTCATTGAAATGGATTGAGATCTCTGCTCCTCCTTCTGACGCCTCCGCTGATGCTGATATTCCTGCTGCTACTACTTGTGTCCCTCCTCTTACAGACGATATCGCCTCTTCGGTCGCCATTGGAGACCCTCCTGTACATCTCATATGGAGAATTCACAAGGACCATTCTCACGAACTCGAGTTATTCGAGCTCAGTGCTTCCAAAGACTTCCCCAAAGTCGGACTTCGAATCACTTTTCCAGAAGCGCTATCTCCCTTGGTTCGTGTTTGTAAAAGTGAGGTTGATATGGGTTTTACTAGCCACCCCTACTTGGTTTATGCATTGACTGTCTCGGGGATGGCTTACCTTTTCAAACTTGGACCCATCTCTACTTATGTATCCCGCTATGTTTTCCGGGAGGACGAGGTTGCCAAGTTTAATATGAACGCCTATGTACCAGTAACAAGTGCTGCAGGAACACCATCTGGGTGCCTTGTCGTTGGGAGGGATGATGGATCCATAGCTTGTTTCCAACTGGGCACACTTGATGCCACTGCTCCTGGTTTTGCGCTGGAGCTGCGGGATGAATTGGGAATTGGTCGTTTGTGGGGTTTCATGTCAAGGGGAAGGATGATAGCAGCTGTGCAAGACTTGGCGATATGTTTCGTTCATGAAAAGCCACTTGTATTTGTGCTTCATTCTGATGGGATGTTACGGGTATGGGATCTTTCATGTCATAGCAGGATCTTTAGTAATAACATGAACAGTTCGACACTGGCAGGAGCTACATTGGAAAGGTTATGGATTGGTCATGTTGACAGTGGTTCAAACATTATTCCTTTGGCAATCTTCTACAGGCAGACTTCGGAAATCAGCTCGGAGACGATCTGTGCATATAGCTTTCGTTGTCATTTTGAGGAAAGATTCGTTATAATGCTGGAACCTTCAGCACAAAATATCCAATTGGATGAGGCTGGATGGGTTGATGTCAAACTTACTTCTGACAAGATATGCATACTGACAAATAATGGATTACTGCTTCACAAGTTGTTGACGAATGTCAATAAGGAAGATGCATGTTCTTACGCTTTGCAGGAGGACTTTGTTGCAGATCAGTTGTTTCAAAGTTCTGACCATTCTTCAGATGACCTTCTTTTGCTGGCGCATTCAATATTGTCATCTTCAAAGGGGCATATTGTACCAGTTGTATCTTCGATTTACTTACGCAGGCTGCTTCTTCCTGGGGTTCATCATAACATTGCTTTGCGCTTAACCTTACTGGATTATAATAGGCACTGGAGTGATTCAGATTTCCATTCTCTAACAGCCGATATGTTGAAGAAGGAAATTCTTTCCCTGATTGAAAATGAGGGAGTGAATGACAATTCAACATCAATAGTTTGCTGCTGGAAAAATTTCTGTTCTCGCTATTTCCAAAACTGGTGCAAGAGCAATGCACCATATGGTTTGCTTCTTGATTCCTACAGAGGAACTTTTGGTTTGATCAGAACGAACTCAGTATCTCTTTTTCGTTGTTCGGAGGATATTGAGCGGCTTATTGCTGGTACTTCTGATGATCTTGGCGATCTTGCTGGATTTGAGTTGGATTCATTTGATGATGCTCTTGACTTTGAGGTGCTCGTTGAAATGCTCAGATGTGTTGTTAATGTCAGCCAACAATTGGGAAAGACAGCTTCTGCTATATTTTATGAATCATTTGTTAGCGCACCGCGAGTTATCTCAGCTGAGGAAATTACTCCTCGCCTGTTGAAGATTTTAGAATCTGGATATAGTTCAACGGTAGCGATGCTTCATATATCAGATCTTGGACCCGATTTTGCATGGGAGAAAACCTTGGCAGATCATAAAAACTTGAGGAAATTTTCTATTGACATGCTGTTGTCTCTTCATGCCTTGTACGAGAAATCTGGCACATGGAGTCGTATTTTAAATGTGATTGAGAAGTATCTAAAATTCCTCATACCTCGGAAAATGATGCCAAAATTTGATGCTGAAATGTCCTTGGATATCAATGCTTCCATCTTGGTCCAGGCTACTTCTCAAGTTGCGAAGGTTATGTTTGAGTCCGCCCTTGACATTCTTCTGTTTCTAAGCTATCTAGTGAGCATTAGTGGGCAGATTCATATGCTTCATGATGATGTATCCAAAATTCAATTTGACTTGATTCCAATGATTCAAGAAATCATTTTTGAGTGGCTTCTTATCCATTTCTTTGCCACCACACCGTCTGAATCAGCTGCAATTGAGGATTTCAGCTCTCAGCTTTCATTGTTACAAATTGATAGCGACATGAGAAGAAGAACATGGAATGAGAAGCTTGGGAAGTGCGAGTTCACTCTGGCTTTTGTATTCTTACCAAGTATTCAAACTTCCTCCAGAGACCAGAGTCGTGATTCCTCGAGAGACATACCAGATGTGAATGACATTATTATTTCAATGCGGGACTTTGCTAGCTGGATCATCTGGGGCCACACAGGGGATTCCTTTACCTTCCTCAGCCGTGCAACAGATCTTGCTTTGATCCTGCTAAGGCATGGGCAATACGATGCCGTCGAGTGCCTACTCACAATTGTGGAGGCACATTTACAAAAGGAGAAGACATCTCATAGTATCCAGGATACAGAGGGAGGATGGTGCATACTTCATCATCTTTTAGGGTGCTGCTTCCTTGCTCAGGCACACCGTGGGTTGCATGGATTGCTGAAAGAGAGGAAAGTCACTGAAGCTGTTCGTTGTTTCTTCAGAGCTTCATCTGGAAAAGGGTCATCCGAGGCTTTACAGGGTTTGCCTCAGGAAGCGGGGTTACCAAACCTTGGTTTCACTGGTAGCTTATCAGCTTCGGCATGGAGACTTCATTACTATCAGTGGGCTATGCAGATATTTGAGCAATATAATATTAGCGAAGGTGCTTGTCAGTTTGCTCTCGCCGCGCTTGAGCAAGTTGAGGAAGCTTTTAGCGTAGAAGATGAGCTGCATGGACGAGACCTAGTCAATGAATCAGTGGATACTATCAAAGGACGACTTTGGGCAAATGTCTTCAAGTTTACTTTAGATCTTAATCTCTATTATGATGCATATTGTTCAATAATTTCAAACCCAGATGAGGAGAGCAAGTACATCTGCTTGAGGCGTCTGATAATTGTTCTTTATGACCGTGGTGCCATAAAGATTCTTTGTGGTGGTCAGCTACCATTTATTGGTCTTACAGAAAAGGTAGAGCACGAGCTTGCCAGGAAGGCAGATTGTTCAGATATTTTAGCAAAGCCAAACTTATACAAGTTGCTTTATGCATTTGAAATGCATCGACATAACTGGAGAAAAGCAGCAAGCTACATGTACCTATATTCTGCTCGTTTGAGAACGGAAACAGCTCTGAAAGATTACCAGCACACGTCATTGGCACTAAAGGAAATTCTGAATGGGCTCTCTTCTGCTATCAATGCACTTCATCTTGTTCATCCTGTCTATGCTTGGATTGATCCACTACTTGAGATAAATTCTCTTCACAACGAGCACTATCCAAGTAAAAAGGCCAAAATTGCAATAGATGAACAGAGTGCCAGCAACAATGCTTATCCTGAAACATGGAAATCTTATGTCGGTATAGAGAAGATGGAGGACGAGTATGTGCTTACTTCTGCAGAATATTTGCTTTCATTGGCACATCTCAAACCTACATCTAGTGGAACCCAGAAAACACCACTAGAGGTTGTTGATCTCCTGATCCAGGCGAATTTATATGATATGGCATTTACAGTCCTTTTAAGATTCTTCAAAGGTTCAGAGTTAAAGAGGGGATTGGAAAGAGTTTTCTCTGCCATGTCCGTGAAATGCTGTTCACATAGAGTTGATTCTTCATGGGTTGGGGATGATCACAGAGCACATGGTCTTCTGATGACTTCATCAATGGATGAAGTGGTTGCTCATAGTTCACCTGATGTGGGTTCTACAAAACAACAATCCAAGGGAATCAATCAATGGGGAACTCTTGAGCTTTATCTTGACAAATATAAAGTGTTCCATGCCCGTTTACCAGTAATTGTTGCTGAAACTCTTCTCCGTACGGATCCTCAAATCGAATTGCCTCTTTGGCTGGTAAAGATGTTCAAGGATGGAAGAAAGGAAAAGACTTGGGGAATGACAGGCCAAGAATCAAATCCAGCATTATTATTCCAATTATATGTTGATTATGGTCGATACAGAGAAGCTACAAATCTTTTGCTTGAGTATATAGGATCCTTTGCATCAATGAGACCGGCTGACATAGTCAAGCGTAAAAGACCATTTGCAGTCTGGTTTCCATACACAGCAGTTCAGCGTCTGTGGTGCCAACTTGAGGAATTGATCAGTTCAGGTCACATGGTAGATCAATGTAACAAGCTCAAGAATTTGTTAAGTGGAGCTTTGCTGAGCCATCTCGAACTGGTAAAAGTAGACTCAGAAGATGCGCTTTCTGCTTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

1507

Amino Acids

169.3

Weight (kDa)

5.6

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	66 - 528	2.6e-53	Nucleoporin Nup120/160, beta-propeller domain
NUP160_helical_2	PF17238	546 - 739	3.5e-91	NUP160, helical domain
TPR_NUP160_120_M	PF23354	918 - 1169	6.9e-37	NUP160/120 middle TPR
HEAT_Nup120	PF23300	918 - 1067	6.3e-13	Nucleoporin Nup120, HEAT repeats
TPR_Nup160_C	PF23347	1221 - 1499	9.2e-13	Nup160 C-terminal TPR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33410 AT1G33410
fragaria_vesca	FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400 FvH4_6g26400
malus_domestica	MD00G1034800.v1.1 MD05G1063300.v1.1 MD05G1161100.v1.1 MD05G1162300.v1.1 MD05G1162400.v1.1 MD07G1280900.v1.1 MD08G1158600.v1.1 MD10G1009800.v1.1 MD10G1160000.v1.1
prunus_persica	Prupe.5G022000_v2.0.a1
pyrus_communis	pycom10g00600
rosa_chinensis	RchiOBHm_Chr2g0126921 RchiOBHm_Chr4g0402211
rosa_laevigata	RLG00000009106 RLG00000018928
rosa_multiflora	Rmu_sc0000007.1_g000030 Rmu_sc0001405.1_g000051
rosa_roxburghii	Rroxscaffold_1G00047890 Rroxscaffold_2G00116920 Rroxscaffold_5G00346940
rosa_rugosa	Rorug02G0270100 Rorug02G0270200
rosa_samantha	Rh2AG322500 Rh2BG330700 Rh2CG310600 Rh2DG350000 Rh4BG104100 Rh4CG117900 Rh4DG101500
rosa_wichuraiana	Rw2G026160 Rw4G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	965, 1320
AccB1I	GGYRCC	3 cut(s)	522, 3212, 4380
AccB7I	CCANNNNNTGG	3 cut(s)	1714, 2867, 3251
AccBSI	CCGCTC	1 cut(s)	1585
AccI	GTMKAC	1 cut(s)	4488
AccII	CGCG	2 cut(s)	1765, 2984
AciI	CCGC	9 cut(s)	99, 436, 613, 1585, 1763, 2121, 2494, 2852, 2982
AcuI	CTGAAG	4 cut(s)	963, 1158, 2779, 2796
AcyI	GRCGYC	2 cut(s)	93, 3184
AdeI	CACNNNGTG	1 cut(s)	2738
AfaI	GTAC	8 cut(s)	189, 489, 1233, 1600, 1952, 3170, 3392, 4117
AfeI	AGCGCT	1 cut(s)	300
AflIII	ACRYGT	2 cut(s)	3387, 3444
AjiI	CACGTC	1 cut(s)	3447
AjnI	CCWGG	6 cut(s)	592, 1273, 2082, 2667, 3284, 3780
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AleI	CACNNNNGTG	2 cut(s)	1332, 2624
Alw21I	GWGCWC	5 cut(s)	246, 1674, 3276, 3570, 3937
Alw26I	GTCTC	9 cut(s)	171, 388, 908, 1941, 2427, 2451, 2896, 3030, 4300
AlwNI	CAGNNNCTG	2 cut(s)	1730, 4375
Ama87I	CYCGRG	3 cut(s)	230, 385, 2452
Aor51HI	AGCGCT	1 cut(s)	300
AoxI	GGCC	3 cut(s)	2521, 3585, 4198
Asp700I	GAANNNNTTC	3 cut(s)	1448, 2781, 4107
AspLEI	GCGC	7 cut(s)	301, 604, 1198, 1302, 1760, 2986, 4504
AspS9I	GGNCC	6 cut(s)	34, 214, 413, 1862, 2080, 2521
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	3978
AsuII	TTCGAA	1 cut(s)	280
AsuNHI	GCTAGC	1 cut(s)	2504
AvaI	CYCGRG	3 cut(s)	230, 385, 2452
AvaII	GGWCC	5 cut(s)	34, 214, 413, 1862, 2080
AxyI	CCTNAGG	1 cut(s)	2844
BaeGI	GKGCMC	1 cut(s)	575
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BamHI	GGATCC	3 cut(s)	548, 4120, 4289
BanI	GGYRCC	3 cut(s)	522, 3212, 4380
BanII	GRGCYC	2 cut(s)	246, 3480
BarI	GAAGNNNNNNTAC	8 cut(s)	711, 743, 1827, 1859, 2407, 2439, 2841, 2873
BauI	CACGAG	1 cut(s)	3275
BbsI	GAAGAC	3 cut(s)	2657, 3082, 3935
Bbv12I	GWGCWC	5 cut(s)	246, 1674, 3276, 3570, 3937
BbvCI	CCTCAGC	2 cut(s)	1779, 2549
BceAI	ACGGC	2 cut(s)	2538, 2588
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	6 cut(s)	594, 1275, 2084, 2669, 3286, 3782
BciVI	GTATCC	5 cut(s)	442, 2206, 2665, 2675, 3052
BclI	TGATCA	3 cut(s)	1536, 3925, 4398
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	9 cut(s)	171, 388, 908, 1941, 2427, 2451, 2896, 3030, 4300
BfaI	CTAG	6 cut(s)	351, 2153, 2505, 3041, 3735, 3758
BfmI	CTRYAG	4 cut(s)	504, 886, 1516, 3693
BfoI	RGCGCY	1 cut(s)	302
BfuI	GTATCC	5 cut(s)	442, 2206, 2665, 2675, 3052
BglI	GCCNNNNNGGC	2 cut(s)	3290, 4144
BglII	AGATCT	4 cut(s)	72, 1855, 2563, 3106
BlpI	GCTNAGC	1 cut(s)	4463
Bme1390I	CCNGG	7 cut(s)	449, 594, 1275, 2084, 2669, 3286, 3782
Bme18I	GGWCC	5 cut(s)	34, 214, 413, 1862, 2080
BmeT110I	CYCGRG	3 cut(s)	230, 385, 2452
BmgBI	CACGTC	1 cut(s)	3447
BmgT120I	GGNCC	6 cut(s)	34, 214, 413, 1862, 2080, 2521
BmrFI	CCNGG	7 cut(s)	449, 594, 1275, 2084, 2669, 3286, 3782
BmrI	ACTGGG	1 cut(s)	578
BmtI	GCTAGC	1 cut(s)	2508
BmuI	ACTGGG	1 cut(s)	578
BoxI	GACNNNNGTC	2 cut(s)	1091, 2439
BpiI	GAAGAC	3 cut(s)	2657, 3082, 3935
BpmI	CTGGAG	4 cut(s)	626, 1351, 2413, 3388
Bpu10I	CCTNAGC	4 cut(s)	1779, 2549, 2582, 2727
Bpu1102I	GCTNAGC	1 cut(s)	4463
Bpu14I	TTCGAA	1 cut(s)	280
BpuEI	CTTGAG	9 cut(s)	1927, 2079, 3008, 3199, 3563, 4064, 4298, 4409, 4421
BpuMI	CCSGG	1 cut(s)	449
BsaBI	GATNNNNATC	2 cut(s)	71, 3111
BsaHI	GRCGYC	2 cut(s)	93, 3184
BsaI	GGTCTC	4 cut(s)	171, 2427, 3030, 4300
BsaXI	ACNNNNNCTCC	4 cut(s)	3152, 3182, 3662, 3692
Bse118I	RCCGGY	1 cut(s)	4309
Bse21I	CCTNAGG	1 cut(s)	2844
Bse3DI	GCAATG	2 cut(s)	1290, 1492
Bse8I	GATNNNNATC	2 cut(s)	71, 3111
BseBI	CCWGG	6 cut(s)	594, 1275, 2084, 2669, 3286, 3782
BseJI	GATNNNNATC	2 cut(s)	71, 3111
BseMI	GCAATG	2 cut(s)	1290, 1492
BseRI	GAGGAG	4 cut(s)	72, 129, 1782, 3173
BseSI	GKGCMC	1 cut(s)	575
Bsh1236I	CGCG	2 cut(s)	1765, 2984
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	2523, 3587, 4200
BshNI	GGYRCC	3 cut(s)	522, 3212, 4380
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	5 cut(s)	246, 1674, 3276, 3570, 3937
BsiHKCI	CYCGRG	3 cut(s)	230, 385, 2452
BsiSI	CCGG	2 cut(s)	448, 4310
BsiWI	CGTACG	1 cut(s)	4115
BslFI	GGGAC	3 cut(s)	20, 119, 2510
BsmAI	GTCTC	9 cut(s)	171, 388, 908, 1941, 2427, 2451, 2896, 3030, 4300
BsmBI	CGTCTC	1 cut(s)	908
BsmFI	GGGAC	3 cut(s)	20, 119, 2510
BsmI	GAATGC	1 cut(s)	1198
BsnI	GGCC	3 cut(s)	2523, 3587, 4200
Bso31I	GGTCTC	4 cut(s)	171, 2427, 3030, 4300
BsoBI	CYCGRG	3 cut(s)	230, 385, 2452
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	7 cut(s)	246, 575, 1674, 3276, 3480, 3570, 3937
Bsp1407I	TGTACA	1 cut(s)	187
Bsp1720I	GCTNAGC	1 cut(s)	4463
BspACI	CCGC	9 cut(s)	99, 436, 613, 1585, 1763, 2121, 2494, 2852, 2982
BspANI	GGCC	3 cut(s)	2523, 3587, 4200
BspFNI	CGCG	2 cut(s)	1765, 2984
BspHI	TCATGA	2 cut(s)	703, 2185
BspMAI	CTGCAG	2 cut(s)	508, 3697
BspOI	GCTAGC	1 cut(s)	2508
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	3 cut(s)	522, 3212, 4380
BspTNI	GGTCTC	4 cut(s)	171, 2427, 3030, 4300
BsrBI	CCGCTC	1 cut(s)	1585
BsrDI	GCAATG	2 cut(s)	1290, 1492
BsrFI	RCCGGY	1 cut(s)	4309
BsrGI	TGTACA	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	4309
BssNI	GRCGYC	2 cut(s)	93, 3184
BssSI	CACGAG	1 cut(s)	3275
BssT1I	CCWWGG	5 cut(s)	309, 1887, 2055, 2866, 4017
Bst2BI	CACGAG	1 cut(s)	3275
Bst2UI	CCWGG	6 cut(s)	594, 1275, 2084, 2669, 3286, 3782
Bst4CI	ACNGT	8 cut(s)	382, 800, 854, 1834, 2280, 2738, 3209, 3811
Bst6I	CTCTTC	5 cut(s)	166, 1944, 3487, 3561, 4113
BstACI	GRCGYC	2 cut(s)	93, 3184
BstAPI	GCANNNNNTGC	1 cut(s)	2752
BstAUI	TGTACA	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	7 cut(s)	25, 1194, 1262, 2506, 3282, 3382, 3616
BstDSI	CCRYGG	2 cut(s)	2737, 3208
BstEII	GGTNACC	1 cut(s)	2856
BstENI	CCTNNNNNAGG	2 cut(s)	2726, 3779
BstFNI	CGCG	2 cut(s)	1765, 2984
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	7 cut(s)	301, 604, 1198, 1302, 1760, 2986, 4504
BstMAI	GTCTC	9 cut(s)	171, 388, 908, 1941, 2427, 2451, 2896, 3030, 4300
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	8 cut(s)	610, 2752, 2981, 3290, 3494, 3593, 4144, 4508
BstNI	CCWGG	6 cut(s)	594, 1275, 2084, 2669, 3286, 3782
BstNSI	RCATGY	3 cut(s)	1113, 1930, 3391
BstPAI	GACNNNNGTC	2 cut(s)	1091, 2439
BstPI	GGTNACC	1 cut(s)	2856
BstSCI	CCNGG	7 cut(s)	447, 592, 1273, 2082, 2667, 3284, 3780
BstSFI	CTRYAG	4 cut(s)	504, 886, 1516, 3693
BstSLI	GKGCMC	1 cut(s)	575
BstUI	CGCG	2 cut(s)	1765, 2984
BstV2I	GAAGAC	3 cut(s)	2657, 3082, 3935
BstX2I	RGATCY	9 cut(s)	72, 548, 757, 777, 1855, 2563, 3106, 4120, 4289
BstYI	RGATCY	9 cut(s)	72, 548, 757, 777, 1855, 2563, 3106, 4120, 4289
Bsu36I	CCTNAGG	1 cut(s)	2844
BsuI	GTATCC	5 cut(s)	442, 2206, 2665, 2675, 3052
BsuRI	GGCC	3 cut(s)	2523, 3587, 4200
BtgI	CCRYGG	2 cut(s)	2737, 3208
BtgZI	GCGATG	1 cut(s)	1853
BtrI	CACGTC	1 cut(s)	3447
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	9 cut(s)	253, 585, 806, 859, 1327, 2772, 2874, 2924, 3060
Cac8I	GCNNGC	7 cut(s)	25, 1194, 1262, 2506, 3282, 3382, 3616
CaiI	CAGNNNCTG	2 cut(s)	1730, 4375
CciI	TCATGA	2 cut(s)	703, 2185
CfoI	GCGC	7 cut(s)	301, 604, 1198, 1302, 1760, 2986, 4504
Cfr10I	RCCGGY	1 cut(s)	4309
Cfr13I	GGNCC	6 cut(s)	34, 214, 413, 1862, 2080, 2521
CseI	GACGC	3 cut(s)	101, 3173, 4361
Csp6I	GTAC	8 cut(s)	188, 488, 1232, 1599, 1951, 3169, 3391, 4116
CviQI	GTAC	8 cut(s)	188, 488, 1232, 1599, 1951, 3169, 3391, 4116
DraI	TTTAAA	1 cut(s)	1983
DraIII	CACNNNGTG	1 cut(s)	2738
Eam1104I	CTCTTC	5 cut(s)	166, 1944, 3487, 3561, 4113
EarI	CTCTTC	5 cut(s)	166, 1944, 3487, 3561, 4113
EciI	GGCGGA	1 cut(s)	2110
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	5 cut(s)	309, 1887, 2055, 2866, 4017
Eco24I	GRGCYC	2 cut(s)	246, 3480
Eco31I	GGTCTC	4 cut(s)	171, 2427, 3030, 4300
Eco32I	GATATC	2 cut(s)	154, 2062
Eco47I	GGWCC	5 cut(s)	34, 214, 413, 1862, 2080
Eco47III	AGCGCT	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	4 cut(s)	963, 1158, 2779, 2796
Eco81I	CCTNAGG	1 cut(s)	2844
Eco88I	CYCGRG	3 cut(s)	230, 385, 2452
Eco91I	GGTNACC	1 cut(s)	2856
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	2 cut(s)	2726, 3779
EcoO109I	RGGNCCY	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	2856
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	6 cut(s)	592, 1273, 2082, 2667, 3284, 3780
EcoRV	GATATC	2 cut(s)	154, 2062
EcoT14I	CCWWGG	5 cut(s)	309, 1887, 2055, 2866, 4017
EcoT22I	ATGCAT	6 cut(s)	376, 1049, 1111, 3130, 3346, 3357
EcoT38I	GRGCYC	2 cut(s)	246, 3480
ErhI	CCWWGG	5 cut(s)	309, 1887, 2055, 2866, 4017
Esp3I	CGTCTC	1 cut(s)	908
FaqI	GGGAC	3 cut(s)	20, 119, 2510
FauI	CCCGC	4 cut(s)	443, 606, 2487, 2845
FauNDI	CATATG	3 cut(s)	197, 1495, 2178
FbaI	TGATCA	3 cut(s)	1536, 3925, 4398
FblI	GTMKAC	1 cut(s)	4488
FriOI	GRGCYC	2 cut(s)	246, 3480
FspBI	CTAG	6 cut(s)	351, 2153, 2505, 3041, 3735, 3758
GlaI	GCGC	7 cut(s)	300, 603, 1197, 1301, 1759, 2985, 4503
GsuI	CTGGAG	4 cut(s)	626, 1351, 2413, 3388
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	2523, 3587, 4200
HapII	CCGG	2 cut(s)	448, 4310
HgaI	GACGC	3 cut(s)	101, 3173, 4361
HhaI	GCGC	7 cut(s)	301, 604, 1198, 1302, 1760, 2986, 4504
Hin1I	GRCGYC	2 cut(s)	93, 3184
Hin6I	GCGC	7 cut(s)	299, 602, 1196, 1300, 1758, 2984, 4502
HinP1I	GCGC	7 cut(s)	299, 602, 1196, 1300, 1758, 2984, 4502
HincII	GTYRAC	2 cut(s)	850, 1086
HindII	GTYRAC	2 cut(s)	850, 1086
HindIII	AAGCTT	2 cut(s)	2369, 3003
HpaII	CCGG	2 cut(s)	448, 4310
HphI	GGTGA	1 cut(s)	3978
Hpy166II	GTNNAC	8 cut(s)	850, 1086, 2388, 3099, 3893, 3986, 4085, 4489
Hpy8I	GTNNAC	8 cut(s)	850, 1086, 2388, 3099, 3893, 3986, 4085, 4489
Hpy99I	CGWCG	1 cut(s)	2609
HpyAV	CCTTC	9 cut(s)	96, 654, 987, 1193, 1369, 2098, 2554, 2951, 3283
HpyCH4III	ACNGT	8 cut(s)	382, 800, 854, 1834, 2280, 2738, 3209, 3811
HpyCH4IV	ACGT	1 cut(s)	3446
HpyF10VI	GCNNNNNNNGC	8 cut(s)	610, 2752, 2981, 3290, 3494, 3593, 4144, 4508
HpySE526I	ACGT	1 cut(s)	3446
Hsp92I	GRCGYC	2 cut(s)	93, 3184
HspAI	GCGC	7 cut(s)	299, 602, 1196, 1300, 1758, 2984, 4502
Ksp22I	TGATCA	3 cut(s)	1536, 3925, 4398
LmnI	GCTCC	5 cut(s)	85, 595, 607, 815, 4454
MaeI	CTAG	6 cut(s)	351, 2153, 2505, 3041, 3735, 3758
MaeII	ACGT	1 cut(s)	3446
MaeIII	GTNAC	7 cut(s)	493, 744, 2325, 2770, 2856, 4409, 4427
MbiI	CCGCTC	1 cut(s)	1585
MfeI	CAATTG	4 cut(s)	995, 1712, 2295, 2622
MflI	RGATCY	9 cut(s)	72, 548, 757, 777, 1855, 2563, 3106, 4120, 4289
MhlI	GDGCHC	7 cut(s)	246, 575, 1674, 3276, 3480, 3570, 3937
MlyI	GAGTC	4 cut(s)	1981, 2126, 2449, 4484
MmeI	TCCRAC	3 cut(s)	253, 589, 1617
Mph1103I	ATGCAT	6 cut(s)	376, 1049, 1111, 3130, 3346, 3357
MroXI	GAANNNNTTC	3 cut(s)	1448, 2781, 4107
MseI	TTAA	8 cut(s)	471, 1304, 1698, 1982, 3111, 3818, 3842, 4448
MslI	CAYNNNNRTG	7 cut(s)	61, 520, 735, 1332, 2190, 2624, 3878
MspA1I	CMGCKG	4 cut(s)	101, 674, 1778, 2291
MspI	CCGG	2 cut(s)	448, 4310
MspR9I	CCNGG	7 cut(s)	449, 594, 1275, 2084, 2669, 3286, 3782
MunI	CAATTG	4 cut(s)	995, 1712, 2295, 2622
Mva1269I	GAATGC	1 cut(s)	1198
MvaI	CCWGG	6 cut(s)	594, 1275, 2084, 2669, 3286, 3782
MvnI	CGCG	2 cut(s)	1765, 2984
MwoI	GCNNNNNNNGC	8 cut(s)	610, 2752, 2981, 3290, 3494, 3593, 4144, 4508
NciI	CCSGG	1 cut(s)	449
NdeI	CATATG	3 cut(s)	197, 1495, 2178
NheI	GCTAGC	1 cut(s)	2504
NmuCI	GTSAC	2 cut(s)	2770, 4409
NsiI	ATGCAT	6 cut(s)	376, 1049, 1111, 3130, 3346, 3357
NspI	RCATGY	3 cut(s)	1113, 1930, 3391
NspV	TTCGAA	1 cut(s)	280
OliI	CACNNNNGTG	2 cut(s)	1332, 2624
PaeR7I	CTCGAG	2 cut(s)	230, 2452
PagI	TCATGA	2 cut(s)	703, 2185
PciI	ACATGT	1 cut(s)	3387
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 2604
PctI	GAATGC	1 cut(s)	1198
PdmI	GAANNNNTTC	3 cut(s)	1448, 2781, 4107
Pfl23II	CGTACG	1 cut(s)	4115
PflFI	GACNNNGTC	2 cut(s)	3041, 4319
PflMI	CCANNNNNTGG	3 cut(s)	1714, 2867, 3251
PfoI	TCCNGGA	2 cut(s)	447, 2667
PleI	GAGTC	4 cut(s)	1980, 2125, 2448, 4484
PpsI	GAGTC	4 cut(s)	1980, 2125, 2448, 4484
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	3387
PshAI	GACNNNNGTC	2 cut(s)	1091, 2439
PsiI	TTATAA	2 cut(s)	965, 1320
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	6 cut(s)	592, 1273, 2082, 2667, 3284, 3780
PspEI	GGTNACC	1 cut(s)	2856
PspGI	CCWGG	6 cut(s)	592, 1273, 2082, 2667, 3284, 3780
PspLI	CGTACG	1 cut(s)	4115
PspPI	GGNCC	6 cut(s)	34, 214, 413, 1862, 2080, 2521
PspPPI	RGGWCCY	1 cut(s)	34
PspXI	VCTCGAGB	1 cut(s)	230
PstI	CTGCAG	2 cut(s)	508, 3697
PstNI	CAGNNNCTG	2 cut(s)	1730, 4375
PsuI	RGATCY	9 cut(s)	72, 548, 757, 777, 1855, 2563, 3106, 4120, 4289
PsyI	GACNNNGTC	2 cut(s)	3041, 4319
PvuII	CAGCTG	3 cut(s)	674, 1778, 2291
RsaI	GTAC	8 cut(s)	189, 489, 1233, 1600, 1952, 3170, 3392, 4117
RsaNI	GTAC	8 cut(s)	188, 488, 1232, 1599, 1951, 3169, 3391, 4116
RseI	CAYNNNNRTG	7 cut(s)	61, 520, 735, 1332, 2190, 2624, 3878
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	8 cut(s)	471, 1304, 1698, 1982, 3111, 3818, 3842, 4448
Sau96I	GGNCC	6 cut(s)	34, 214, 413, 1862, 2080, 2521
SchI	GAGTC	4 cut(s)	1981, 2126, 2449, 4484
ScrFI	CCNGG	7 cut(s)	449, 594, 1275, 2084, 2669, 3286, 3782
SduI	GDGCHC	7 cut(s)	246, 575, 1674, 3276, 3480, 3570, 3937
SfcI	CTRYAG	4 cut(s)	504, 886, 1516, 3693
Sfr274I	CTCGAG	2 cut(s)	230, 2452
SfuI	TTCGAA	1 cut(s)	280
SinI	GGWCC	5 cut(s)	34, 214, 413, 1862, 2080
SlaI	CTCGAG	2 cut(s)	230, 2452
SmiMI	CAYNNNNRTG	7 cut(s)	61, 520, 735, 1332, 2190, 2624, 3878
SsiI	CCGC	9 cut(s)	99, 436, 613, 1585, 1763, 2121, 2494, 2852, 2982
SspI	AATATT	3 cut(s)	1206, 2950, 3701
SspMI	CTAG	6 cut(s)	351, 2153, 2505, 3041, 3735, 3758
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	7 cut(s)	447, 592, 1273, 2082, 2667, 3284, 3780
StyI	CCWWGG	5 cut(s)	309, 1887, 2055, 2866, 4017
TaaI	ACNGT	8 cut(s)	382, 800, 854, 1834, 2280, 2738, 3209, 3811
TaiI	ACGT	1 cut(s)	3449
TaqII	GACCGA	1 cut(s)	154
TatI	WGTACW	2 cut(s)	187, 3168
TauI	GCSGC	2 cut(s)	1588, 2984
Tru1I	TTAA	8 cut(s)	471, 1304, 1698, 1982, 3111, 3818, 3842, 4448
Tru9I	TTAA	8 cut(s)	471, 1304, 1698, 1982, 3111, 3818, 3842, 4448
TscAI	CASTG	9 cut(s)	253, 592, 813, 859, 1334, 2779, 2881, 2924, 3060
TseFI	GTSAC	2 cut(s)	2770, 4409
Tsp45I	GTSAC	2 cut(s)	2770, 4409
TspGWI	ACGGA	4 cut(s)	3431, 3868, 4103, 4133
TspRI	CASTG	9 cut(s)	253, 592, 813, 859, 1334, 2779, 2881, 2924, 3060
Tth111I	GACNNNGTC	2 cut(s)	3041, 4319
Van91I	CCANNNNNTGG	3 cut(s)	1714, 2867, 3251
VpaK11BI	GGWCC	5 cut(s)	34, 214, 413, 1862, 2080
XagI	CCTNNNNNAGG	2 cut(s)	2726, 3779
XceI	RCATGY	3 cut(s)	1113, 1930, 3391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4344
XhoI	CTCGAG	2 cut(s)	230, 2452
XmiI	GTMKAC	1 cut(s)	4488
XmnI	GAANNNNTTC	3 cut(s)	1448, 2781, 4107
XspI	CTAG	6 cut(s)	351, 2153, 2505, 3041, 3735, 3758
Zsp2I	ATGCAT	6 cut(s)	376, 1049, 1111, 3130, 3346, 3357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.