pycom11g12710

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002189
Physical Location & Seq
Reverse (-)
11644159 .. 11647240
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGGAGTTTTGGGGTGTTGAGGTGAAGGCTGGAGAGCCTCTAAAAGTAGTGCCAGAGGAAAGCTCTGTTATCCACTTATCACAGGCAACTCTGGGCGAGTTGAAAAAGGGAGGTGATCAGTGTGTTATCCATGTCAAGGTTGGGAACCAGAAGCTTGTTTTGGCAAATCTCTCATCTGATAAAATGCCTCAGATTCCCTTTGACTTGGTCTTTGACAAAGAGTTCGAGCTCTCGCACAACTTGAAAAGTGGGAGTGTCCACTTCTGTGTGTTTCTCCATTGCTTCCTTGACTACTTGCTCTGTTCTGGTGCCACTGAATCGGATGAGGAGGACCATTCTGTATTCACAGATTCAGAAGAGGATCTCCCACTGAATTTTACCGACAATGGTAAAGTTGTTGCAGCAAAGCCAGCTCCACCCAAGACTAATGCTGTCAAACCAGAATCTTCTGGAAAGCAGAAGGTTAATATTGTAGAGCCAATTAAGGATGAGGATGATTCTGATGACTCAGATGATGTTGATGATTCTGATGACGATGATGACGATAGAAGTTCTGATGAGGACATGCTTGGAGCTGATAGCAGTGATGAAGATGATGACGACAGTGAGGAAGAAGAGGAGACCCCAACTCCTAAGAAGAACTCCAAGAAAAGGCCCAATGAATCTGCTCCGAAAACTCCTGTCTCTGCTAAGAAGGCAAAGCAAGTTACTCCACAGAAGACTGATGGAAAGAAGGGTGTCCACACTGCTACACCACACCCAGCAAAGGGAGGAAAGACTCCTGCTACCTCTGACAAGTCCAAGCCACAAACACCCAAGTCTGCTGGCGGTGATCACTCTTGCAAGCCATGCAACAAGTCATTTAACTCCGATGGTGCTCTTTCGTCTCACAAGAAGGCCAAGCACAGCGCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

32.95

Weight (kDa)

4.9

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 88 8.8e-17 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 1 cut(s) 828
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 373
AfeI AGCGCT 1 cut(s) 910
AfiI CCNNNNNNNGG 4 cut(s) 136, 651, 766, 767
AgsI TTSAA 2 cut(s) 103, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AleI CACNNNNGTG 1 cut(s) 264
AluBI AGCT 5 cut(s) 63, 154, 229, 413, 575
AluI AGCT 5 cut(s) 63, 154, 229, 413, 575
Alw21I GWGCWC 2 cut(s) 231, 880
Alw26I GTCTC 3 cut(s) 614, 688, 891
AlwI GGATC 1 cut(s) 369
Aor51HI AGCGCT 1 cut(s) 910
AoxI GGCC 2 cut(s) 653, 897
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 373
ArsI GACNNNNNNTTYG 4 cut(s) 194, 206, 226, 238
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 2 cut(s) 331, 654
AsuHPI GGTGA 3 cut(s) 34, 125, 842
AvaII GGWCC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 725
Bbv12I GWGCWC 2 cut(s) 231, 880
BbvI GCAGC 1 cut(s) 413
BccI CCATC 2 cut(s) 719, 866
BclI TGATCA 2 cut(s) 115, 832
BcoDI GTCTC 3 cut(s) 614, 688, 891
BfoI RGCGCY 1 cut(s) 912
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 331, 654
BmiI GGNNCC 2 cut(s) 146, 310
BpiI GAAGAC 1 cut(s) 725
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 614
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 651, 766, 767
Bse3DI GCAATG 1 cut(s) 277
BseGI GGATG 3 cut(s) 328, 493, 499
BseLI CCNNNNNNNGG 4 cut(s) 136, 651, 766, 767
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 203, 522
BseRI GAGGAG 2 cut(s) 341, 632
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 760
BshFI GGCC 2 cut(s) 655, 899
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 231, 880
BslI CCNNNNNNNGG 4 cut(s) 136, 651, 766, 767
BsmAI GTCTC 3 cut(s) 614, 688, 891
BsmBI CGTCTC 1 cut(s) 891
BsnI GGCC 2 cut(s) 655, 899
Bso31I GGTCTC 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 231, 880
Bsp143I GATC 3 cut(s) 115, 361, 832
BspACI CCGC 1 cut(s) 828
BspANI GGCC 2 cut(s) 655, 899
BspCNI CTCAG 2 cut(s) 202, 521
BspLI GGNNCC 2 cut(s) 146, 310
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 277
BssMI GATC 3 cut(s) 115, 361, 832
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 2 cut(s) 351, 609
BstAPI GCANNNNNTGC 1 cut(s) 849
BstC8I GCNNGC 3 cut(s) 411, 826, 845
BstDEI CTNAG 5 cut(s) 189, 508, 633, 690, 912
BstF5I GGATG 3 cut(s) 328, 493, 499
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 3 cut(s) 118, 364, 835
BstMAI GTCTC 3 cut(s) 614, 688, 891
BstMBI GATC 3 cut(s) 115, 361, 832
BstMWI GCNNNNNNNGC 3 cut(s) 410, 695, 849
BstNSI RCATGY 1 cut(s) 568
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 725
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 2 cut(s) 655, 899
BtsCI GGATG 3 cut(s) 328, 493, 499
BtsI GCAGTG 2 cut(s) 589, 744
BtsIMutI CAGTG 6 cut(s) 125, 312, 368, 589, 610, 744
Cac8I GCNNGC 3 cut(s) 411, 826, 845
CfoI GCGC 1 cut(s) 911
Cfr13I GGNCC 2 cut(s) 331, 654
CviAII CATG 3 cut(s) 131, 565, 849
DdeI CTNAG 5 cut(s) 189, 508, 633, 690, 912
DpnI GATC 3 cut(s) 117, 363, 834
DpnII GATC 3 cut(s) 115, 361, 832
Eam1104I CTCTTC 2 cut(s) 351, 609
EarI CTCTTC 2 cut(s) 351, 609
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 614
Eco47I GGWCC 1 cut(s) 331
Eco47III AGCGCT 1 cut(s) 910
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 891
FaeI CATG 3 cut(s) 134, 568, 852
FaiI YATR 3 cut(s) 132, 566, 850
FatI CATG 3 cut(s) 130, 564, 848
FbaI TGATCA 2 cut(s) 115, 832
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 3 cut(s) 335, 500, 506
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 402
GlaI GCGC 1 cut(s) 910
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 764
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 2 cut(s) 655, 899
HhaI GCGC 1 cut(s) 911
Hin1II CATG 3 cut(s) 134, 568, 852
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 9 cut(s) 193, 317, 350, 443, 497, 506, 524, 662, 778
HphI GGTGA 3 cut(s) 34, 125, 842
Hpy166II GTNNAC 2 cut(s) 259, 742
Hpy188III TCNNGA 1 cut(s) 450
Hpy8I GTNNAC 2 cut(s) 259, 742
HpyAV CCTTC 5 cut(s) 19, 454, 688, 727, 889
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4V TGCA 3 cut(s) 401, 843, 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 695, 849
HpyF3I CTNAG 5 cut(s) 189, 508, 633, 690, 912
Hsp92II CATG 3 cut(s) 134, 568, 852
HspAI GCGC 1 cut(s) 909
Ksp22I TGATCA 2 cut(s) 115, 832
Kzo9I GATC 3 cut(s) 115, 361, 832
LmnI GCTCC 3 cut(s) 418, 572, 673
Lsp1109I GCAGC 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 706
MalI GATC 3 cut(s) 117, 363, 834
MboI GATC 3 cut(s) 115, 361, 832
MboII GAAGA 7 cut(s) 368, 438, 602, 623, 626, 649, 730
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 231, 880
MluCI AATT 2 cut(s) 373, 480
MlyI GAGTC 2 cut(s) 500, 772
MseI TTAA 3 cut(s) 465, 483, 864
MslI CAYNNNNRTG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 410, 695, 849
NdeII GATC 3 cut(s) 115, 361, 832
NlaIII CATG 3 cut(s) 134, 568, 852
NlaIV GGNNCC 2 cut(s) 146, 310
NspI RCATGY 1 cut(s) 568
OliI CACNNNNGTG 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PfeI GAWTC 7 cut(s) 193, 317, 350, 443, 497, 524, 662
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 2 cut(s) 500, 772
PpsI GAGTC 2 cut(s) 500, 772
Psp124BI GAGCTC 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 760
PspN4I GGNNCC 2 cut(s) 146, 310
PspPI GGNCC 2 cut(s) 331, 654
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 465, 483, 864
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 3 cut(s) 115, 361, 832
Sau96I GGNCC 2 cut(s) 331, 654
SchI GAGTC 2 cut(s) 500, 772
SduI GDGCHC 2 cut(s) 231, 880
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 373, 480
SsiI CCGC 1 cut(s) 828
SspI AATATT 1 cut(s) 469
SstI GAGCTC 1 cut(s) 231
TaaI ACNGT 1 cut(s) 605
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 373, 480
TfiI GAWTC 7 cut(s) 193, 317, 350, 443, 497, 524, 662
Tru1I TTAA 3 cut(s) 465, 483, 864
Tru9I TTAA 3 cut(s) 465, 483, 864
TscAI CASTG 6 cut(s) 125, 319, 375, 589, 610, 751
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 603, 675
TspRI CASTG 6 cut(s) 125, 319, 375, 589, 610, 751
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 373
XceI RCATGY 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.