pycom11g25580

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001362
Physical Location & Seq
Reverse (-)
28350355 .. 28352802
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
ATGGCGAAGAAAGCTGTGAAATACTCAGTGGTGGACGCGTTCACAGACTCGGCTTTCAAAGGGAACCCAGCAGCGGTTTGCTTGCTGGAGGAAGAAAGAGACGACCAGTGGCTACAGGCCGTGGCCGCCGAGTTCAACCTCTCCGAGACATGTTACTTGACTCGGCTCACTGAGTCTGACTCAGCTCCTCGGTTCGGTCTCAGATGGTTCACTCCTTCCAATGAGGTTGAGCTTTGTGGTCACGCAACATTAGCAGCTGCATACACTCTCTTTAACTCTGGTTTGGTAAAGTCCGACATTATTGAGTTTGCCACATTATCCGGAATCCTAAAAGCTAAAAAGGTTCCAGATGTTAAGACAGCCAACGGTTTGAATACTCACAACGGGGAAGCACAAGAGTCCTATTTTGTTGAACTCAATTTTCCTGCTGACCCGTCTAATGAATTTAACTCTGGCGATGTTTCGGTAATCTCTAAGGCCTTAGATGGTGCTTCTATGGTTGAAATAAGGAGGACCACTGTCACAGATGATTTACTTGTTGTGCTTCCATCAGCAAAAGCTGTCACAGATTTACAGCCGCAGTTAGATGCGATTCGACAATGTCCAGGGTCTAGTGGAGTGATCATTACAGGGATTGCTCCTCCGGAATCTGGATATGATTTTTACAGTAGATTCTTTTGTCCCAAACATGGGATTGATGAGGATCCCGTTACTGGGAGCGCACATTGTGCCCTTTCATCATACTGGTGCAAAAAACTTGGAAAGTCTGATGTTTTTGCTTATCAGGCATCACCTCGAGGGGGAGCAATAAACGTTCATCTAGATGAGCAAAATCAAAGGGTACTGCTGCGAGGAAAAGCTGTTATTGTGATGGAAGGAACTGTTTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

298

Amino Acids

32.11

Weight (kDa)

5.04

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 11 - 293 1.2e-83 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 795
AccII CGCG 1 cut(s) 38
AccIII TCCGGA 2 cut(s) 320, 643
AciI CCGC 3 cut(s) 74, 126, 578
AclI AACGTT 1 cut(s) 813
AclWI GGATC 2 cut(s) 698, 711
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 443
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 1 cut(s) 843
AfiI CCNNNNNNNGG 8 cut(s) 73, 194, 650, 689, 690, 713, 714, 800
AflIII ACRYGT 2 cut(s) 36, 149
AgsI TTSAA 5 cut(s) 58, 136, 373, 413, 503
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 8 cut(s) 14, 185, 232, 257, 335, 560, 860, 890
AluI AGCT 8 cut(s) 14, 185, 232, 257, 335, 560, 860, 890
Alw26I GTCTC 3 cut(s) 93, 140, 203
AlwI GGATC 2 cut(s) 698, 711
Ama87I CYCGRG 1 cut(s) 795
Aor13HI TCCGGA 2 cut(s) 320, 643
AoxI GGCC 3 cut(s) 117, 123, 477
ApeKI GCWGC 4 cut(s) 71, 254, 257, 847
ApoI RAATTY 1 cut(s) 443
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 783
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 733
BamHI GGATCC 1 cut(s) 703
BbvI GCAGC 4 cut(s) 83, 244, 266, 834
BccI CCATC 4 cut(s) 198, 479, 556, 865
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 606
BclI TGATCA 1 cut(s) 621
BcoDI GTCTC 3 cut(s) 93, 140, 203
BfaI CTAG 2 cut(s) 612, 821
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 6 cut(s) 72, 126, 255, 258, 578, 848
BlsI GCNGC 6 cut(s) 73, 127, 256, 259, 579, 849
Bme1390I CCNGG 1 cut(s) 606
Bme18I GGWCC 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 3 cut(s) 65, 345, 705
BmrFI CCNGG 1 cut(s) 606
BmrI ACTGGG 1 cut(s) 723
BmsI GCATC 2 cut(s) 577, 797
BmuI ACTGGG 1 cut(s) 723
BoxI GACNNNNGTC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 3 cut(s) 120, 188, 605
BsaWI WCCGGW 2 cut(s) 320, 643
Bsc4I CCNNNNNNNGG 8 cut(s) 73, 194, 650, 689, 690, 713, 714, 800
Bse1I ACTGG 3 cut(s) 106, 718, 749
Bse8I GATNNNNATC 1 cut(s) 702
BseAI TCCGGA 2 cut(s) 320, 643
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 120, 188, 605
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 8 cut(s) 73, 194, 650, 689, 690, 713, 714, 800
BseMII CTCAG 4 cut(s) 39, 162, 195, 214
BseNI ACTGG 3 cut(s) 106, 718, 749
BseRI GAGGAG 2 cut(s) 177, 630
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 4 cut(s) 83, 244, 266, 834
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 119, 125, 479
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 2 cut(s) 321, 644
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 8 cut(s) 73, 194, 650, 689, 690, 713, 714, 800
BsmAI GTCTC 3 cut(s) 93, 140, 203
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 3 cut(s) 119, 125, 479
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 733
Bsp13I TCCGGA 2 cut(s) 320, 643
Bsp143I GATC 2 cut(s) 621, 703
BspACI CCGC 3 cut(s) 74, 126, 578
BspANI GGCC 3 cut(s) 119, 125, 479
BspCNI CTCAG 4 cut(s) 38, 163, 194, 213
BspEI TCCGGA 2 cut(s) 320, 643
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 65, 345, 705
BspPI GGATC 2 cut(s) 698, 711
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 3 cut(s) 106, 718, 749
BssECI CCNNGG 3 cut(s) 120, 188, 605
BssMI GATC 2 cut(s) 621, 703
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 4 cut(s) 368, 520, 668, 883
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 6 cut(s) 25, 171, 181, 200, 474, 481
BstDSI CCRYGG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 2 cut(s) 624, 706
BstMAI GTCTC 3 cut(s) 93, 140, 203
BstMBI GATC 2 cut(s) 621, 703
BstMWI GCNNNNNNNGC 5 cut(s) 11, 125, 251, 728, 785
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 153
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 604
BstSFI CTRYAG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 83, 244, 266, 834
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BsuRI GGCC 3 cut(s) 119, 125, 479
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 471
BtsIMutI CAGTG 4 cut(s) 33, 113, 168, 516
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 1 cut(s) 513
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 842
CviAII CATG 2 cut(s) 150, 689
CviQI GTAC 1 cut(s) 842
DdeI CTNAG 6 cut(s) 25, 171, 181, 200, 474, 481
DpnI GATC 2 cut(s) 623, 705
DpnII GATC 2 cut(s) 621, 703
DraIII CACNNNGTG 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 479
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 795
EcoRII CCWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 2 cut(s) 153, 692
FaiI YATR 6 cut(s) 151, 262, 497, 657, 690, 742
FaqI GGGAC 1 cut(s) 666
FatI CATG 2 cut(s) 149, 688
FbaI TGATCA 1 cut(s) 621
Fnu4HI GCNGC 6 cut(s) 72, 126, 255, 258, 578, 848
Fsp4HI GCNGC 6 cut(s) 72, 126, 255, 258, 578, 848
FspBI CTAG 2 cut(s) 612, 821
GlaI GCGC 1 cut(s) 721
GluI GCNGC 6 cut(s) 72, 126, 255, 258, 578, 848
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 3 cut(s) 119, 125, 479
HapII CCGG 2 cut(s) 321, 644
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 722
Hin1II CATG 2 cut(s) 153, 692
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HinfI GANTC 9 cut(s) 47, 160, 173, 179, 324, 398, 592, 647, 672
HpaII CCGG 2 cut(s) 321, 644
HphI GGTGA 1 cut(s) 783
Hpy166II GTNNAC 3 cut(s) 34, 42, 210
Hpy188I TCNGA 5 cut(s) 145, 178, 203, 295, 769
Hpy188III TCNNGA 5 cut(s) 321, 347, 644, 651, 821
Hpy8I GTNNAC 3 cut(s) 34, 42, 210
HpyAV CCTTC 2 cut(s) 225, 869
HpyCH4III ACNGT 4 cut(s) 368, 520, 668, 883
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 2 cut(s) 260, 750
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 125, 251, 728, 785
HpyF3I CTNAG 6 cut(s) 25, 171, 181, 200, 474, 481
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 2 cut(s) 153, 692
HspAI GCGC 1 cut(s) 720
Kpn2I TCCGGA 2 cut(s) 320, 643
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 2 cut(s) 621, 703
LmnI GCTCC 4 cut(s) 190, 643, 717, 803
Lsp1109I GCAGC 4 cut(s) 83, 244, 266, 834
LweI GCATC 2 cut(s) 577, 797
MaeI CTAG 2 cut(s) 612, 821
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 5 cut(s) 152, 239, 520, 562, 709
MalI GATC 2 cut(s) 623, 705
MboI GATC 2 cut(s) 621, 703
MboII GAAGA 2 cut(s) 19, 104
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 2 cut(s) 418, 443
MluI ACGCGT 1 cut(s) 36
MlyI GAGTC 5 cut(s) 41, 154, 173, 182, 407
MmeI TCCRAC 1 cut(s) 318
MroI TCCGGA 2 cut(s) 320, 643
MseI TTAA 3 cut(s) 273, 354, 447
MslI CAYNNNNRTG 2 cut(s) 745, 822
MspA1I CMGCKG 2 cut(s) 74, 257
MspI CCGG 2 cut(s) 321, 644
MspR9I CCNGG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 5 cut(s) 11, 125, 251, 728, 785
NdeII GATC 2 cut(s) 621, 703
NlaIII CATG 2 cut(s) 153, 692
NlaIV GGNNCC 3 cut(s) 65, 345, 705
NmeAIII GCCGAG 3 cut(s) 29, 142, 154
NmuCI GTSAC 3 cut(s) 239, 520, 562
NspI RCATGY 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 795
PceI AGGCCT 1 cut(s) 479
PciI ACATGT 1 cut(s) 149
PfeI GAWTC 4 cut(s) 324, 592, 647, 672
PflFI GACNNNGTC 1 cut(s) 600
PkrI GCNGC 6 cut(s) 73, 127, 256, 259, 579, 849
PleI GAGTC 5 cut(s) 41, 154, 173, 181, 406
PpsI GAGTC 5 cut(s) 41, 154, 173, 181, 406
PscI ACATGT 1 cut(s) 149
PshAI GACNNNNGTC 1 cut(s) 518
Psp1406I AACGTT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 65, 345, 705
PspPI GGNCC 1 cut(s) 513
PspXI VCTCGAGB 1 cut(s) 795
PsuI RGATCY 1 cut(s) 703
PsyI GACNNNGTC 1 cut(s) 600
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 843
RsaNI GTAC 1 cut(s) 842
RseI CAYNNNNRTG 2 cut(s) 745, 822
SaqAI TTAA 3 cut(s) 273, 354, 447
SatI GCNGC 6 cut(s) 72, 126, 255, 258, 578, 848
Sau3AI GATC 2 cut(s) 621, 703
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 5 cut(s) 41, 154, 173, 182, 407
ScrFI CCNGG 1 cut(s) 606
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 2 cut(s) 577, 797
SfcI CTRYAG 1 cut(s) 113
Sfr274I CTCGAG 1 cut(s) 795
SinI GGWCC 1 cut(s) 513
SlaI CTCGAG 1 cut(s) 795
SmiMI CAYNNNNRTG 2 cut(s) 745, 822
SmlI CTYRAG 1 cut(s) 795
SmoI CTYRAG 1 cut(s) 795
Sse9I AATT 2 cut(s) 418, 443
SseBI AGGCCT 1 cut(s) 479
SsiI CCGC 3 cut(s) 74, 126, 578
SspMI CTAG 2 cut(s) 612, 821
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 604
TaaI ACNGT 4 cut(s) 368, 520, 668, 883
TaiI ACGT 1 cut(s) 816
TaqI TCGA 2 cut(s) 595, 796
TaqII GACCGA 1 cut(s) 185
TasI AATT 2 cut(s) 418, 443
TauI GCSGC 2 cut(s) 128, 580
TfiI GAWTC 4 cut(s) 324, 592, 647, 672
Tru1I TTAA 3 cut(s) 273, 354, 447
Tru9I TTAA 3 cut(s) 273, 354, 447
TscAI CASTG 4 cut(s) 33, 113, 175, 523
TseFI GTSAC 3 cut(s) 239, 520, 562
TseI GCWGC 4 cut(s) 71, 254, 257, 847
Tsp45I GTSAC 3 cut(s) 239, 520, 562
TspDTI ATGAA 3 cut(s) 456, 726, 806
TspRI CASTG 4 cut(s) 33, 113, 175, 523
Tth111I GACNNNGTC 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 513
XapI RAATTY 1 cut(s) 443
XbaI TCTAGA 1 cut(s) 820
XceI RCATGY 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 795
XspI CTAG 2 cut(s) 612, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.