pycom12g03340

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001922
Physical Location & Seq
Reverse (-)
3107633 .. 3108857
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
ATGGACAATGTGGGATCAAGTGCCGCGGCCGTTGAGGGCGCGCAAAAATTTCTCAACATTGCATACAGTGCTTTCAACTCAAAGTTATCGTCGTGCCGGAGATGCCGGCTATTAGTCCAACTGATTAAATTTAATCATTTCCCTAATCAACTATTAATTTATGGCAACGTTTGTTTAATCCAACTTTGTTTTCTCAGAATCCGAAACTCCTCGGAAAATAAATTAACCCTAGAAACTATCGAATTATTTATTTTTATTCTTTTTTTTATTTCTCTTGGAAACCAAAAAAACTCCGAAAAATCGAAGAAAAAAAATCTCCCATTTGAAATGGCTGCTGCTTCATCCGCATCGCAAGACAAGACTGTCACGGGTTATCCAACTCCGCCCGGCCAATACGCCGCCGGATACCCGGCCACCACAGCCTATCCCTATGTGGCTGCACCGCCGCACCTCAATCCCAATACTTACCAGCCCACGGGCCCGCCACCTCCCTACTACAATCCCCAGTCCAATGGGCCCTTCAGGCGCAAACCCACCATCCTCTGCCGCATCATGATCGCCGCCGTTGCCGTCTTCACCATCATGTCCATCATCTTCTTCATCTCCTGGCTCGCCCTCCGCCCTCAACTCCCCAAGTTCCGGGTCGAATCGGCCACCGTCTCCCCGCTCAACGCGACAGGCTCCGAGCTCACCGCCACTTGGGACTTCACCCTCCTCGCCGCCAACCCCAACCACAAGCTCACCATCTTCTACGACAGACTCGAGGCCTCGCTTATATACAACGATGAAGTTCTGCTCACCGCGGCGGCGCTGCCTCCCTTCGTATTAGCCAAGAGGAACCAGACGCACGTCAATATCAAGCTCGCGACGGTGGGGGTTTACGTCGACGACGAGGTGGCGAGGGAAATCGCCGACGGGAAGGATCGGGGGTCGGTGAGGTTCGGAGTGGGTGTGGAGGCGTTGGTCCGGTTTAAGTCAGGGGTGTTTCAAACGAGACGTCGGTTGTTGCGGGTCTTCTGCGATGGGGTCGAATTCACCGGGTTTGCCCGGAATAATGGGACCGGGACTTTGACGGGTCAGGCAAGTCCGTGCAAGGTTGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

369

Amino Acids

40.63

Weight (kDa)

9.51

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 238 - 331 4.2e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 885
AccII CGCG 5 cut(s) 26, 41, 674, 803, 866
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 22, 930
AcoI YGGCCR 4 cut(s) 27, 388, 411, 651
AcsI RAATTY 3 cut(s) 47, 128, 1031
AcuI CTGAAG 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 997
AfiI CCNNNNNNNGG 3 cut(s) 475, 639, 699
AgsI TTSAA 3 cut(s) 76, 326, 989
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 1 cut(s) 605
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 503, 535
AluBI AGCT 3 cut(s) 688, 739, 862
AluI AGCT 3 cut(s) 688, 739, 862
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 664, 988
AlwI GGATC 2 cut(s) 22, 930
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 7 cut(s) 27, 388, 411, 478, 515, 651, 765
ApaI GGGCCC 2 cut(s) 482, 519
ApeKI GCWGC 4 cut(s) 332, 335, 437, 811
ApoI RAATTY 3 cut(s) 47, 128, 1031
ArsI GACNNNNNNTTYG 6 cut(s) 74, 106, 982, 1014, 1051, 1083
AseI ATTAAT 1 cut(s) 155
AspLEI GCGC 4 cut(s) 41, 43, 528, 811
AspS9I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
AsuC2I CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
AsuHPI GGTGA 7 cut(s) 568, 682, 700, 733, 790, 946, 1027
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 964, 1059
BaeGI GKGCMC 2 cut(s) 482, 519
BanII GRGCYC 3 cut(s) 482, 519, 690
BbsI GAAGAC 2 cut(s) 565, 1006
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 4 cut(s) 319, 322, 424, 798
BccI CCATC 5 cut(s) 545, 587, 596, 752, 1016
BceAI ACGGC 3 cut(s) 14, 548, 554
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 607
BciVI GTATCC 1 cut(s) 398
BcnI CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
BcoDI GTCTC 2 cut(s) 664, 988
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 812
BfuI GTATCC 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 523
Bme1390I CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
Bme18I GGWCC 2 cut(s) 964, 1059
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
BmiI GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
BmrFI CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 3 cut(s) 92, 356, 558
BmuI ACTGGG 1 cut(s) 499
BoxI GACNNNNGTC 1 cut(s) 848
BpiI GAAGAC 2 cut(s) 565, 1006
BpuMI CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
BsaHI GRCGYC 1 cut(s) 997
BsaJI CCNNGG 4 cut(s) 24, 210, 474, 801
BsaWI WCCGGW 1 cut(s) 966
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bsc4I CCNNNNNNNGG 3 cut(s) 475, 639, 699
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 4 cut(s) 24, 210, 474, 801
BseGI GGATG 2 cut(s) 341, 537
BseLI CCNNNNNNNGG 3 cut(s) 475, 639, 699
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 505
BsePI GCGCGC 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 199, 704
BseSI GKGCMC 2 cut(s) 482, 519
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 4 cut(s) 319, 322, 424, 798
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 5 cut(s) 26, 41, 674, 803, 866
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 1 cut(s) 761
BslFI GGGAC 3 cut(s) 716, 1072, 1078
BslI CCNNNNNNNGG 3 cut(s) 475, 639, 699
BsmAI GTCTC 2 cut(s) 664, 988
BsmBI CGTCTC 2 cut(s) 664, 988
BsmFI GGGAC 3 cut(s) 716, 1072, 1078
BsnI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BsoBI CYCGRG 1 cut(s) 761
Bsp120I GGGCCC 2 cut(s) 478, 515
Bsp1286I GDGCHC 3 cut(s) 482, 519, 690
Bsp143I GATC 3 cut(s) 14, 555, 922
Bsp68I TCGCGA 1 cut(s) 866
BspANI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 5 cut(s) 26, 41, 674, 803, 866
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
BspPI GGATC 2 cut(s) 22, 930
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 4 cut(s) 24, 210, 474, 801
BssHII GCGCGC 1 cut(s) 39
BssMI GATC 3 cut(s) 14, 555, 922
BssNI GRCGYC 1 cut(s) 997
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 4 cut(s) 68, 364, 658, 871
BstACI GRCGYC 1 cut(s) 997
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 5 cut(s) 41, 107, 482, 612, 864
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 3 cut(s) 24, 474, 801
BstF5I GGATG 2 cut(s) 341, 537
BstFNI CGCG 5 cut(s) 26, 41, 674, 803, 866
BstH2I RGCGCY 1 cut(s) 812
BstHHI GCGC 4 cut(s) 41, 43, 528, 811
BstKTI GATC 3 cut(s) 17, 558, 925
BstMAI GTCTC 2 cut(s) 664, 988
BstMBI GATC 3 cut(s) 14, 555, 922
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 6 cut(s) 68, 102, 344, 419, 523, 566
BstNI CCWGG 1 cut(s) 607
BstPAI GACNNNNGTC 1 cut(s) 848
BstSCI CCNGG 7 cut(s) 385, 408, 605, 639, 1037, 1046, 1061
BstSLI GKGCMC 2 cut(s) 482, 519
BstUI CGCG 5 cut(s) 26, 41, 674, 803, 866
BstV1I GCAGC 4 cut(s) 319, 322, 424, 798
BstV2I GAAGAC 2 cut(s) 565, 1006
BstXI CCANNNNNNTGG 1 cut(s) 512
BstZI CGGCCG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 398
BsuRI GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
BtgI CCRYGG 3 cut(s) 24, 474, 801
BtgZI GCGATG 2 cut(s) 333, 1035
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 2 cut(s) 341, 537
BtsIMutI CAGTG 1 cut(s) 73
BtuMI TCGCGA 1 cut(s) 866
Cac8I GCNNGC 5 cut(s) 41, 107, 482, 612, 864
CciI TCATGA 1 cut(s) 552
CfoI GCGC 4 cut(s) 41, 43, 528, 811
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
Cfr42I CCGCGG 2 cut(s) 27, 804
CseI GACGC 1 cut(s) 853
CviAII CATG 2 cut(s) 553, 583
DdeI CTNAG 1 cut(s) 194
DpnI GATC 3 cut(s) 16, 557, 924
DpnII GATC 3 cut(s) 14, 555, 922
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 4 cut(s) 27, 388, 411, 651
EagI CGGCCG 1 cut(s) 27
EciI GGCGGA 2 cut(s) 372, 608
Ecl136II GAGCTC 1 cut(s) 688
EclXI CGGCCG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 767
Eco24I GRGCYC 3 cut(s) 482, 519, 690
Eco47I GGWCC 2 cut(s) 964, 1059
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 761
EcoICRI GAGCTC 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 516
EcoRI GAATTC 1 cut(s) 1031
EcoRII CCWGG 1 cut(s) 605
EcoT38I GRGCYC 3 cut(s) 482, 519, 690
Esp3I CGTCTC 2 cut(s) 664, 988
FaeI CATG 2 cut(s) 556, 586
FaiI YATR 7 cut(s) 64, 162, 432, 554, 584, 776, 778
FaqI GGGAC 3 cut(s) 716, 1072, 1078
FatI CATG 2 cut(s) 552, 582
FauI CCCGC 3 cut(s) 489, 672, 1002
FblI GTMKAC 1 cut(s) 885
FokI GGATG 2 cut(s) 328, 524
FriOI GRGCYC 3 cut(s) 482, 519, 690
FspBI CTAG 1 cut(s) 230
GlaI GCGC 4 cut(s) 40, 42, 527, 810
HaeII RGCGCY 1 cut(s) 812
HaeIII GGCC 7 cut(s) 29, 390, 413, 480, 517, 653, 767
HgaI GACGC 1 cut(s) 853
HhaI GCGC 4 cut(s) 41, 43, 528, 811
Hin1I GRCGYC 1 cut(s) 997
Hin1II CATG 2 cut(s) 556, 586
Hin6I GCGC 4 cut(s) 39, 41, 526, 809
HinP1I GCGC 4 cut(s) 39, 41, 526, 809
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 3 cut(s) 198, 647, 759
HphI GGTGA 7 cut(s) 568, 682, 700, 733, 790, 946, 1027
Hpy166II GTNNAC 2 cut(s) 880, 886
Hpy188I TCNGA 6 cut(s) 197, 203, 214, 295, 685, 944
Hpy188III TCNNGA 2 cut(s) 553, 865
Hpy8I GTNNAC 2 cut(s) 880, 886
Hpy99I CGWCG 7 cut(s) 94, 871, 887, 890, 893, 917, 1002
HpyAV CCTTC 3 cut(s) 529, 829, 913
HpyCH4III ACNGT 4 cut(s) 68, 364, 658, 871
HpyCH4IV ACGT 4 cut(s) 168, 849, 882, 997
HpyCH4V TGCA 3 cut(s) 62, 440, 1092
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 102, 344, 419, 523, 566
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 4 cut(s) 168, 849, 882, 997
Hsp92I GRCGYC 1 cut(s) 997
Hsp92II CATG 2 cut(s) 556, 586
HspAI GCGC 4 cut(s) 39, 41, 526, 809
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
KspI CCGCGG 2 cut(s) 27, 804
Kzo9I GATC 3 cut(s) 14, 555, 922
LmnI GCTCC 1 cut(s) 686
Lsp1109I GCAGC 4 cut(s) 319, 322, 424, 798
LweI GCATC 3 cut(s) 92, 356, 558
MaeI CTAG 1 cut(s) 230
MaeII ACGT 4 cut(s) 168, 849, 882, 997
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 16, 557, 924
MbiI CCGCTC 1 cut(s) 667
MboI GATC 3 cut(s) 14, 555, 922
MboII GAAGA 6 cut(s) 316, 565, 586, 589, 739, 1006
MhlI GDGCHC 3 cut(s) 482, 519, 690
MluCI AATT 6 cut(s) 47, 128, 156, 221, 242, 1031
MlyI GAGTC 1 cut(s) 753
MmeI TCCRAC 3 cut(s) 142, 205, 401
MroNI GCCGGC 1 cut(s) 105
MseI TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 2 cut(s) 26, 803
MspR9I CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
MvaI CCWGG 1 cut(s) 607
MvnI CGCG 5 cut(s) 26, 41, 674, 803, 866
MwoI GCNNNNNNNGC 6 cut(s) 68, 102, 344, 419, 523, 566
NaeI GCCGGC 1 cut(s) 107
NciI CCSGG 6 cut(s) 387, 410, 641, 1039, 1048, 1063
NdeII GATC 3 cut(s) 14, 555, 922
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 2 cut(s) 556, 586
NlaIV GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
NmuCI GTSAC 1 cut(s) 364
NruI TCGCGA 1 cut(s) 866
PaeR7I CTCGAG 1 cut(s) 761
PagI TCATGA 1 cut(s) 552
PauI GCGCGC 1 cut(s) 39
PceI AGGCCT 1 cut(s) 767
PcsI WCGNNNNNNNCGW 2 cut(s) 759, 888
PdiI GCCGGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 198, 647
PleI GAGTC 1 cut(s) 753
PpsI GAGTC 1 cut(s) 753
PshAI GACNNNNGTC 1 cut(s) 848
PshBI ATTAAT 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 690
Psp1406I AACGTT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 5 cut(s) 480, 517, 682, 839, 1060
PspOMI GGGCCC 2 cut(s) 478, 515
PspPI GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
PspXI VCTCGAGB 1 cut(s) 761
PteI GCGCGC 1 cut(s) 39
RruI TCGCGA 1 cut(s) 866
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 690
SacII CCGCGG 2 cut(s) 27, 804
SalI GTCGAC 1 cut(s) 884
SaqAI TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
Sau3AI GATC 3 cut(s) 14, 555, 922
Sau96I GGNCC 6 cut(s) 478, 479, 515, 516, 964, 1059
SchI GAGTC 1 cut(s) 753
ScrFI CCNGG 7 cut(s) 387, 410, 607, 641, 1039, 1048, 1063
SduI GDGCHC 3 cut(s) 482, 519, 690
SfaNI GCATC 3 cut(s) 92, 356, 558
Sfr274I CTCGAG 1 cut(s) 761
Sfr303I CCGCGG 2 cut(s) 27, 804
SgrBI CCGCGG 2 cut(s) 27, 804
SgrDI CGTCGACG 1 cut(s) 884
SinI GGWCC 2 cut(s) 964, 1059
SlaI CTCGAG 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 6 cut(s) 47, 128, 156, 221, 242, 1031
SseBI AGGCCT 1 cut(s) 767
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 690
StuI AGGCCT 1 cut(s) 767
StyD4I CCNGG 7 cut(s) 385, 408, 605, 639, 1037, 1046, 1061
TaaI ACNGT 4 cut(s) 68, 364, 658, 871
TaiI ACGT 4 cut(s) 171, 852, 885, 1000
TaqI TCGA 6 cut(s) 240, 302, 645, 762, 885, 1029
TasI AATT 6 cut(s) 47, 128, 156, 221, 242, 1031
TauI GCSGC 9 cut(s) 26, 29, 401, 448, 549, 563, 722, 806, 809
TfiI GAWTC 2 cut(s) 198, 647
Tru1I TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
Tru9I TTAA 6 cut(s) 126, 132, 155, 176, 224, 972
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 4 cut(s) 332, 335, 437, 811
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 3 cut(s) 330, 589, 801
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 964, 1059
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 3 cut(s) 47, 128, 1031
XhoI CTCGAG 1 cut(s) 761
XmiI GTMKAC 1 cut(s) 885
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.