Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001108

Physical Location & Seq

Genomic Coordinates Reverse (-)

12543525 .. 12546397

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAATGAGCAAGGTTCTGGTGGTAGGTGGTACTGGGTACGTAGGACGAAGGATTGTTAAGGCAAGCCTAGCCCTAGGTCACCCAACCTATGTCCTTCAAAGGCCAGAGATTGGTCTTGATATTGAGAAGCTGCAGATGCTCTTGTCCTTCAAGAAGCAAGGGGCTCACCTTGTGGAGGGCTCCTTTTCTGATTTCCAAAGCCTTGTTCGTGCTGTCAAGCTTGTCGATGTTGTCATTTGTACCATGTCCGGGGTGCATTTTAGGAGTCACAACATTTTGTTGCAGCTCAAGCTTGTTCAAGCAATCAAAGAAGCCGGAAATATTAAGCGTTTCTTGCCATCGGAGTTCGGTCTAGACCCAGCACGTATGGGACATGCACTTGAACCGGGAAGAGTCACATTTGACGAGAAAATGGTAGTGAGAAAGGCAATACAAGATGCTAAAATCCCCTTCACTTATGTATGTGGTGCTGCCTTTGGGGGTTATTTTGCGGGTAACCTTTCGCAGATGGGGACTGTCCTTCCTCCAAGGGAGAAAGTGCTTATATATGGAGATGGTAACTCTAAAGTCACTCTTATGGATGAAGATGACATCGCAACATACACGATCAAGACGATAGATCGATCCACGAACATTGAACAAAACATTGTACCTTCGTCCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

223

Amino Acids

24.39

Weight (kDa)

9.02

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 219	8.5e-46	NmrA-like family
Epimerase	PF01370	6 - 113	7.6e-07	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	10 - 156	1.1e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32100 AT4G13660 AT4G13660
fragaria_vesca	FvH4_5g23690 FvH4_5g23700 FvH4_5g23710 FvH4_5g23710 FvH4_5g23710 FvH4_5g23720
malus_domestica	MD13G1195700.v1.1 MD13G1195800.v1.1
prunus_persica	Prupe.5G022800_v2.0.a1 Prupe.5G022800_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G022900_v2.0.a1 Prupe.5G023000_v2.0.a1 Prupe.5G023200_v2.0.a1 Prupe.5G023400_v2.0.a1 Prupe.5G023600_v2.0.a1 Prupe.5G023600_v2.0.a1
pyrus_communis	pycom13g16800
rosa_chinensis	RchiOBHm_Chr7g0212981 RchiOBHm_Chr7g0212991 RchiOBHm_Chr7g0213011 RchiOBHm_Chr7g0213021 RchiOBHm_Chr7g0213031
rosa_laevigata	RLG00000002836 RLG00000002840
rosa_multiflora	Rmu_sc0001121.1_g000022 Rmu_sc0001684.1_g000007 Rmu_sc0017711.1_g000001 Rmu_sc0029477.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246290 Rroxscaffold_3G00246340 Rroxscaffold_3G00246360
rosa_rugosa	Rorug07G0138500 Rorug07G0138700 Rorug07G0138800 Rorug07G0138900 Rorug07G0139000
rosa_samantha	Rh7AG269900 Rh7AG270200 Rh7BG265300 Rh7BG265500 Rh7BG265600 Rh7BG265700 Rh7BG265800 Rh7BG265900 Rh7CG289100 Rh7CG289500 Rh7DG278000 Rh7DG278400 Rh7DG278500
rosa_wichuraiana	Rw7G023450 Rw7G023470 Rw7G023480 Rw7G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	4 cut(s)	34, 41, 244, 654
AfiI	CCNNNNNNNGG	3 cut(s)	113, 178, 252
AgsI	TTSAA	5 cut(s)	101, 154, 302, 386, 641
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	4 cut(s)	133, 223, 289, 295
AluI	AGCT	4 cut(s)	133, 223, 289, 295
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	3 cut(s)	133, 286, 473
AspA2I	CCTAGG	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	253, 390
AsuHPI	GGTGA	2 cut(s)	74, 161
AvrII	CCTAGG	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	169, 185
BbvI	GCAGC	3 cut(s)	120, 298, 460
BccI	CCATC	3 cut(s)	349, 505, 551
BcnI	CCSGG	2 cut(s)	253, 390
BfaI	CTAG	3 cut(s)	71, 77, 356
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	134, 287, 474
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	135, 288, 475
Bme1390I	CCNGG	2 cut(s)	253, 390
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	253, 390
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	129, 430
BmuI	ACTGGG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	253, 390
Bsa29I	ATCGAT	1 cut(s)	625
BsaAI	YACGTR	2 cut(s)	43, 368
BsaJI	CCNNGG	3 cut(s)	76, 252, 530
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 178, 252
Bse1I	ACTGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	625
BseDI	CCNNGG	3 cut(s)	76, 252, 530
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	3 cut(s)	113, 178, 252
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	120, 298, 460
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	252, 318, 389
BslFI	GGGAC	2 cut(s)	387, 529
BslI	CCNNNNNNNGG	3 cut(s)	113, 178, 252
BsmFI	GGGAC	2 cut(s)	387, 529
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	169, 185
Bsp143I	GATC	3 cut(s)	609, 622, 626
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	76, 252, 530
BssMI	GATC	3 cut(s)	609, 622, 626
BssT1I	CCWWGG	2 cut(s)	76, 530
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	388
BstBAI	YACGTR	2 cut(s)	43, 368
BstC8I	GCNNGC	1 cut(s)	67
BstEII	GGTNACC	2 cut(s)	80, 497
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	3 cut(s)	612, 625, 629
BstMBI	GATC	3 cut(s)	609, 622, 626
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 139, 292, 337
BstNSI	RCATGY	1 cut(s)	380
BstPI	GGTNACC	2 cut(s)	80, 497
BstSCI	CCNGG	2 cut(s)	251, 388
BstSFI	CTRYAG	1 cut(s)	134
BstSNI	TACGTA	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	120, 298, 460
Bsu15I	ATCGAT	1 cut(s)	625
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	625
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	625
Csp6I	GTAC	4 cut(s)	33, 40, 243, 653
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	2 cut(s)	247, 377
CviQI	GTAC	4 cut(s)	33, 40, 243, 653
DpnI	GATC	3 cut(s)	611, 624, 628
DpnII	GATC	3 cut(s)	609, 622, 626
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco105I	TACGTA	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	76, 530
Eco24I	GRGCYC	2 cut(s)	169, 185
Eco91I	GGTNACC	2 cut(s)	80, 497
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO65I	GGTNACC	2 cut(s)	80, 497
EcoT14I	CCWWGG	2 cut(s)	76, 530
EcoT38I	GRGCYC	2 cut(s)	169, 185
ErhI	CCWWGG	2 cut(s)	76, 530
FaeI	CATG	2 cut(s)	250, 380
FalI	AAGNNNNNCTT	4 cut(s)	320, 352, 561, 593
FaqI	GGGAC	2 cut(s)	387, 529
FatI	CATG	2 cut(s)	246, 376
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	134, 287, 474
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	169, 185
Fsp4HI	GCNGC	3 cut(s)	134, 287, 474
FspBI	CTAG	3 cut(s)	71, 77, 356
GluI	GCNGC	3 cut(s)	134, 287, 474
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	3 cut(s)	252, 318, 389
Hin1II	CATG	2 cut(s)	250, 380
HindIII	AAGCTT	2 cut(s)	221, 293
HinfI	GANTC	2 cut(s)	268, 396
HpaII	CCGG	3 cut(s)	252, 318, 389
HphI	GGTGA	2 cut(s)	74, 161
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	193, 346
Hpy188III	TCNNGA	4 cut(s)	119, 154, 356, 613
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	6 cut(s)	45, 107, 160, 463, 533, 666
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	2 cut(s)	42, 367
HpyCH4V	TGCA	4 cut(s)	136, 259, 286, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 139, 292, 337
HpySE526I	ACGT	2 cut(s)	42, 367
Hsp92II	CATG	2 cut(s)	250, 380
Kzo9I	GATC	3 cut(s)	609, 622, 626
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	5, 21, 120, 265, 331, 375, 402
Lsp1109I	GCAGC	3 cut(s)	120, 298, 460
LweI	GCATC	2 cut(s)	129, 430
MaeI	CTAG	3 cut(s)	71, 77, 356
MaeII	ACGT	2 cut(s)	42, 367
MaeIII	GTNAC	6 cut(s)	80, 269, 397, 497, 560, 571
MalI	GATC	3 cut(s)	611, 624, 628
MboI	GATC	3 cut(s)	609, 622, 626
MboII	GAAGA	2 cut(s)	405, 599
MhlI	GDGCHC	2 cut(s)	169, 185
MlyI	GAGTC	2 cut(s)	277, 405
MnlI	CCTC	2 cut(s)	172, 537
MseI	TTAA	2 cut(s)	60, 327
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	3 cut(s)	252, 318, 389
MspR9I	CCNGG	2 cut(s)	253, 390
MwoI	GCNNNNNNNGC	4 cut(s)	71, 139, 292, 337
NciI	CCSGG	2 cut(s)	253, 390
NdeII	GATC	3 cut(s)	609, 622, 626
NlaIII	CATG	2 cut(s)	250, 380
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	4 cut(s)	80, 269, 397, 571
NspI	RCATGY	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	135, 288, 475
PleI	GAGTC	2 cut(s)	276, 404
PpsI	GAGTC	2 cut(s)	276, 404
Ppu21I	YACGTR	2 cut(s)	43, 368
PspEI	GGTNACC	2 cut(s)	80, 497
PspFI	CCCAGC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	138
RsaI	GTAC	4 cut(s)	34, 41, 244, 654
RsaNI	GTAC	4 cut(s)	33, 40, 243, 653
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	60, 327
SatI	GCNGC	3 cut(s)	134, 287, 474
Sau3AI	GATC	3 cut(s)	609, 622, 626
SchI	GAGTC	2 cut(s)	277, 405
ScrFI	CCNGG	2 cut(s)	253, 390
SduI	GDGCHC	2 cut(s)	169, 185
SfaNI	GCATC	2 cut(s)	129, 430
SfcI	CTRYAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SnaBI	TACGTA	1 cut(s)	43
SsiI	CCGC	1 cut(s)	494
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	3 cut(s)	71, 77, 356
StyD4I	CCNGG	2 cut(s)	251, 388
StyI	CCWWGG	2 cut(s)	76, 530
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	2 cut(s)	45, 370
TaqI	TCGA	2 cut(s)	228, 625
TaqII	GACCGA	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	60, 327
Tru9I	TTAA	2 cut(s)	60, 327
TseFI	GTSAC	4 cut(s)	80, 269, 397, 571
TseI	GCWGC	3 cut(s)	133, 286, 473
Tsp45I	GTSAC	4 cut(s)	80, 269, 397, 571
TspDTI	ATGAA	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	380
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	3 cut(s)	71, 77, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.