Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Reverse (-)

3486619 .. 3488117

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGTTTTCCAAAATCCAATTACTAGTAGTATGTCATACTTTGGGGTTACATCTAGAAATGTACGGCACTTGTCTCTGCTTTGTCAAGATATTAAACCATCTACACTCGAACAGTATCACAGGTACAAGAAGTTGAGGACATTTATATTGCTTCCTCGTGATCCAACCAGTCTTAGTGAAGTTCCTCATGATTTTTTTTCAAAGTTGCCATGCTTAAGGGTGTTGAATTTGAGTCGTAGTCAAATCACTGAGTTGCCCGAGTCCATTGGAAAATTGATGCACCTTCGATACCTCAATCTTAATGATACCCTTATCAGAAGATTGCCAAAGTCGTTACCAGATATATGTCGGTTAGAGATACTCAAGCTCAAGAATTGTTCTAAACTCCATGAATTGCCTAAGAACTTAAAGAAATTGAGTAAGTTGCGACATCTTGACTTTGATAGACCCAATCAAATCAGTTCCTGGCCAAAAAATCTTGGGAAATTAACTCTTCTGGAAACCCTGCCCGAATTTAGAGTGGGAAAAGACAGAGGATGTAAAATTGAGGAGCTTAAGAACATGACGTGCCTTCGTGGATCACTTTCCATAAAAAATCTTGAGAATGTGGCAGATGTTGCAGAGGCTGAGGGTGTTATTCTACACAACAAGCAATATCTTGAAAGTTTGGGATTACACTGGAACAATGGAACCAGAGATGCAACAGTTGAAGAAGCAGTTCTTGAGGGCCTTAAACCTCATGATAGGTTGAAAAGGTTACAAGTAGCAGGTTATTTGGGTTCAAACTTTCCAGATTGGATAGGCCAATTATCGTTCTGCAAGCTTGAAAGTATTCGTTTGGAGAAGTGCCAATTGTGTACAGTACTTCCTTCTCTTGGTCAGCTTCCAGTTCTTAAAGAACTTGTCATTGAAAAGATGGGTGCTTTAACAGACGTGGATCGTCAGTTTTGTGGGTTGGCAGGTTCTTTTCCATCCTTGGAGACACTAACATTTTGTGACATGCCGAAGTTGAGAATTTGGTCAGGAATCAATGAAACTGACATGCCTCGCCTTACAGAGCTTTGCATTGATTCTTGCCAAAATTTGGTCACCCTACCTTCACTTCACCACCTAACTTCACTTGAAACTTTAGACATCAACGGGTGCCCTCAGCTTCTATCAATTCCAGGCGAAGGACTACCACGCTCACTCAAACATTTGAGCATTTCGGACAGTGACATATTAAAGGAGCGGTGCAAGGGAATAGATGGTGCCGGTTGGAACAAGATCAGATGGATCCCTGAGATAGTGATTGATGGTGATGAAATTCCAATGGACGGGCGTGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

444

Amino Acids

50.2

Weight (kDa)

8.42

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	57 - 104	9.3e-08	Leucine rich repeat
LRR_14	PF23598	66 - 380	3.6e-34	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	182 - 306	3.1e-39	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	758, 950
AccB1I	GGYRCC	2 cut(s)	1143, 1250
AccB7I	CCANNNNNTGG	1 cut(s)	1084
AccBSI	CCGCTC	1 cut(s)	1231
AciI	CCGC	1 cut(s)	1231
AclWI	GGATC	5 cut(s)	155, 586, 945, 1270, 1283
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	5 cut(s)	226, 512, 1014, 1081, 1305
AfaI	GTAC	4 cut(s)	63, 125, 859, 864
AfiI	CCNNNNNNNGG	4 cut(s)	875, 1084, 1172, 1316
AflII	CTTAAG	2 cut(s)	214, 554
AgsI	TTSAA	9 cut(s)	201, 226, 662, 710, 751, 783, 827, 911, 1124
AhlI	ACTAGT	1 cut(s)	23
AjiI	CACGTC	2 cut(s)	567, 934
AjnI	CCWGG	2 cut(s)	464, 1165
AluBI	AGCT	6 cut(s)	367, 553, 823, 883, 1060, 1153
AluI	AGCT	6 cut(s)	367, 553, 823, 883, 1060, 1153
Alw26I	GTCTC	2 cut(s)	78, 974
AlwI	GGATC	5 cut(s)	155, 586, 945, 1270, 1283
AlwNI	CAGNNNCTG	2 cut(s)	465, 626
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	467, 727, 802
ApoI	RAATTY	5 cut(s)	226, 512, 1014, 1081, 1305
Asp700I	GAANNNNTTC	2 cut(s)	717, 831
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	3 cut(s)	1081, 1097, 1310
AvaI	CYCGRG	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	1148
BalI	TGGCCA	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	1275
BanI	GGYRCC	2 cut(s)	1143, 1250
BauI	CACGAG	1 cut(s)	156
BbvCI	CCTCAGC	2 cut(s)	627, 1149
BccI	CCATC	6 cut(s)	106, 910, 979, 1241, 1266, 1289
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	466, 1167
BcoDI	GTCTC	2 cut(s)	78, 974
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 54
BfrI	CTTAAG	2 cut(s)	214, 554
BfuAI	ACCTGC	2 cut(s)	758, 950
BmcAI	AGTACT	1 cut(s)	864
Bme1390I	CCNGG	2 cut(s)	466, 1167
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	2 cut(s)	567, 934
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	4 cut(s)	691, 1145, 1252, 1277
BmrFI	CCNGG	2 cut(s)	466, 1167
BmsI	GCATC	2 cut(s)	267, 688
Bpu10I	CCTNAGC	2 cut(s)	627, 1149
BpuEI	CTTGAG	4 cut(s)	347, 353, 620, 743
BsaJI	CCNNGG	1 cut(s)	975
Bsc4I	CCNNNNNNNGG	4 cut(s)	875, 1084, 1172, 1316
Bse118I	RCCGGY	1 cut(s)	1253
Bse1I	ACTGG	3 cut(s)	168, 683, 887
BseBI	CCWGG	2 cut(s)	466, 1167
BseDI	CCNNGG	1 cut(s)	975
BseGI	GGATG	2 cut(s)	542, 971
BseLI	CCNNNNNNNGG	4 cut(s)	875, 1084, 1172, 1316
BseMII	CTCAG	4 cut(s)	240, 618, 1163, 1272
BseNI	ACTGG	3 cut(s)	168, 683, 887
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	1148
BshFI	GGCC	3 cut(s)	469, 729, 804
BshNI	GGYRCC	2 cut(s)	1143, 1250
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	1254
BslI	CCNNNNNNNGG	4 cut(s)	875, 1084, 1172, 1316
BsmAI	GTCTC	2 cut(s)	78, 974
BsnI	GGCC	3 cut(s)	469, 729, 804
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	1148
Bsp1407I	TGTACA	1 cut(s)	857
Bsp143I	GATC	5 cut(s)	160, 578, 937, 1266, 1275
BspACI	CCGC	1 cut(s)	1231
BspANI	GGCC	3 cut(s)	469, 729, 804
BspCNI	CTCAG	4 cut(s)	241, 619, 1162, 1273
BspHI	TCATGA	2 cut(s)	187, 739
BspLI	GGNNCC	4 cut(s)	691, 1145, 1252, 1277
BspMI	ACCTGC	2 cut(s)	758, 950
BspPI	GGATC	5 cut(s)	155, 586, 945, 1270, 1283
BspT107I	GGYRCC	2 cut(s)	1143, 1250
BspTI	CTTAAG	2 cut(s)	214, 554
BsrBI	CCGCTC	1 cut(s)	1231
BsrFI	RCCGGY	1 cut(s)	1253
BsrGI	TGTACA	1 cut(s)	857
BsrI	ACTGG	3 cut(s)	168, 683, 887
BssAI	RCCGGY	1 cut(s)	1253
BssECI	CCNNGG	1 cut(s)	975
BssMI	GATC	5 cut(s)	160, 578, 937, 1266, 1275
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	975
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	466, 1167
Bst4CI	ACNGT	4 cut(s)	114, 706, 862, 1214
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	2 cut(s)	214, 554
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	857
BstC8I	GCNNGC	1 cut(s)	821
BstDEI	CTNAG	6 cut(s)	173, 249, 399, 627, 1149, 1281
BstEII	GGTNACC	1 cut(s)	1087
BstF5I	GGATG	2 cut(s)	542, 971
BstKTI	GATC	5 cut(s)	163, 581, 940, 1269, 1278
BstMAI	GTCTC	2 cut(s)	78, 974
BstMBI	GATC	5 cut(s)	160, 578, 937, 1266, 1275
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	2 cut(s)	466, 1167
BstNSI	RCATGY	2 cut(s)	1003, 1045
BstPI	GGTNACC	1 cut(s)	1087
BstSCI	CCNGG	2 cut(s)	464, 1165
BstSLI	GKGCMC	1 cut(s)	1148
BstX2I	RGATCY	1 cut(s)	1275
BstYI	RGATCY	1 cut(s)	1275
BsuRI	GGCC	3 cut(s)	469, 729, 804
BtrI	CACGTC	2 cut(s)	567, 934
BtsCI	GGATG	2 cut(s)	542, 971
BtsIMutI	CAGTG	3 cut(s)	246, 676, 1219
BveI	ACCTGC	2 cut(s)	758, 950
Cac8I	GCNNGC	1 cut(s)	821
CaiI	CAGNNNCTG	2 cut(s)	465, 626
CciI	TCATGA	2 cut(s)	187, 739
Cfr10I	RCCGGY	1 cut(s)	1253
Cfr13I	GGNCC	1 cut(s)	727
Csp6I	GTAC	4 cut(s)	62, 124, 858, 863
CviAII	CATG	7 cut(s)	188, 210, 389, 562, 740, 1000, 1042
CviQI	GTAC	4 cut(s)	62, 124, 858, 863
DdeI	CTNAG	6 cut(s)	173, 249, 399, 627, 1149, 1281
DpnI	GATC	5 cut(s)	162, 580, 939, 1268, 1277
DpnII	GATC	5 cut(s)	160, 578, 937, 1266, 1275
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	1087
EcoO109I	RGGNCCY	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	1087
EcoRII	CCWGG	2 cut(s)	464, 1165
EcoT14I	CCWWGG	1 cut(s)	975
ErhI	CCWWGG	1 cut(s)	975
FaeI	CATG	7 cut(s)	191, 213, 392, 565, 743, 1003, 1045
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FatI	CATG	7 cut(s)	187, 209, 388, 561, 739, 999, 1041
FokI	GGATG	2 cut(s)	549, 958
FspBI	CTAG	2 cut(s)	24, 54
HaeIII	GGCC	3 cut(s)	469, 729, 804
HapII	CCGG	1 cut(s)	1254
Hin1II	CATG	7 cut(s)	191, 213, 392, 565, 743, 1003, 1045
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	4 cut(s)	232, 260, 1026, 1070
HpaII	CCGG	1 cut(s)	1254
HphI	GGTGA	3 cut(s)	1081, 1097, 1310
Hpy166II	GTNNAC	1 cut(s)	858
Hpy188I	TCNGA	3 cut(s)	317, 1210, 1271
Hpy8I	GTNNAC	1 cut(s)	858
HpyAV	CCTTC	5 cut(s)	293, 581, 879, 1107, 1166
HpyCH4III	ACNGT	4 cut(s)	114, 706, 862, 1214
HpyCH4IV	ACGT	2 cut(s)	566, 933
HpyCH4V	TGCA	6 cut(s)	280, 620, 701, 819, 1065, 1236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	6 cut(s)	173, 249, 399, 627, 1149, 1281
HpySE526I	ACGT	2 cut(s)	566, 933
Hsp92II	CATG	7 cut(s)	191, 213, 392, 565, 743, 1003, 1045
Kzo9I	GATC	5 cut(s)	160, 578, 937, 1266, 1275
LmnI	GCTCC	2 cut(s)	550, 1228
LweI	GCATC	2 cut(s)	267, 688
MaeI	CTAG	2 cut(s)	24, 54
MaeII	ACGT	2 cut(s)	566, 933
MaeIII	GTNAC	6 cut(s)	46, 333, 756, 995, 1087, 1214
MalI	GATC	5 cut(s)	162, 580, 939, 1268, 1277
MbiI	CCGCTC	1 cut(s)	1231
MboI	GATC	5 cut(s)	160, 578, 937, 1266, 1275
MboII	GAAGA	3 cut(s)	330, 485, 722
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	1 cut(s)	1275
MhlI	GDGCHC	1 cut(s)	1148
MlsI	TGGCCA	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	241, 269
MmeI	TCCRAC	2 cut(s)	188, 1238
Mox20I	TGGCCA	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	717, 831
MscI	TGGCCA	1 cut(s)	469
Msp20I	TGGCCA	1 cut(s)	469
MspCI	CTTAAG	2 cut(s)	214, 554
MspI	CCGG	1 cut(s)	1254
MspR9I	CCNGG	2 cut(s)	466, 1167
MunI	CAATTG	1 cut(s)	851
MvaI	CCWGG	2 cut(s)	466, 1167
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeII	GATC	5 cut(s)	160, 578, 937, 1266, 1275
NlaIII	CATG	7 cut(s)	191, 213, 392, 565, 743, 1003, 1045
NlaIV	GGNNCC	4 cut(s)	691, 1145, 1252, 1277
NmuCI	GTSAC	3 cut(s)	995, 1087, 1214
NspI	RCATGY	2 cut(s)	1003, 1045
PagI	TCATGA	2 cut(s)	187, 739
PdmI	GAANNNNTTC	2 cut(s)	717, 831
PfeI	GAWTC	2 cut(s)	1026, 1070
PflMI	CCANNNNNTGG	1 cut(s)	1084
PleI	GAGTC	2 cut(s)	240, 268
PpsI	GAGTC	2 cut(s)	240, 268
Psp6I	CCWGG	2 cut(s)	464, 1165
PspEI	GGTNACC	1 cut(s)	1087
PspGI	CCWGG	2 cut(s)	464, 1165
PspN4I	GGNNCC	4 cut(s)	691, 1145, 1252, 1277
PspPI	GGNCC	1 cut(s)	727
PstNI	CAGNNNCTG	2 cut(s)	465, 626
PsuI	RGATCY	1 cut(s)	1275
RsaI	GTAC	4 cut(s)	63, 125, 859, 864
RsaNI	GTAC	4 cut(s)	62, 124, 858, 863
Sau3AI	GATC	5 cut(s)	160, 578, 937, 1266, 1275
Sau96I	GGNCC	1 cut(s)	727
ScaI	AGTACT	1 cut(s)	864
SchI	GAGTC	2 cut(s)	241, 269
ScrFI	CCNGG	2 cut(s)	466, 1167
SduI	GDGCHC	1 cut(s)	1148
SfaNI	GCATC	2 cut(s)	267, 688
SmlI	CTYRAG	6 cut(s)	214, 362, 368, 554, 599, 722
SmoI	CTYRAG	6 cut(s)	214, 362, 368, 554, 599, 722
SpeI	ACTAGT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	1231
SspMI	CTAG	2 cut(s)	24, 54
StyD4I	CCNGG	2 cut(s)	464, 1165
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	4 cut(s)	114, 706, 862, 1214
TaiI	ACGT	2 cut(s)	569, 936
TaqI	TCGA	2 cut(s)	108, 286
TatI	WGTACW	2 cut(s)	857, 862
TfiI	GAWTC	2 cut(s)	1026, 1070
TscAI	CASTG	3 cut(s)	253, 683, 1219
TseFI	GTSAC	3 cut(s)	995, 1087, 1214
Tsp45I	GTSAC	3 cut(s)	995, 1087, 1214
TspDTI	ATGAA	3 cut(s)	405, 1047, 1317
TspRI	CASTG	3 cut(s)	253, 683, 1219
Van91I	CCANNNNNTGG	1 cut(s)	1084
Vha464I	CTTAAG	2 cut(s)	214, 554
XapI	RAATTY	5 cut(s)	226, 512, 1014, 1081, 1305
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	2 cut(s)	1003, 1045
XmnI	GAANNNNTTC	2 cut(s)	717, 831
XspI	CTAG	2 cut(s)	24, 54
ZrmI	AGTACT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.