Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Reverse (-)

54923466 .. 54923789

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG324500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCAGAGATAGCATCCCTGGTACTCTCCACCGGCATTACGTCGGCAATTCTTCAGGTTGTTGTTGACAGAGTCGCAAAATTTGTTGAACAAAAGAGAGACATGTTCACTGGGGTCGACGACAATCTCAGAAAGTTGAAGAGAACGCTGCTGAAGATTCAAGCTCGTGTTGATGATATAGAAAAGAAACATTGCATCGCGGAGGCAGCAGAAGCTTTGCTCGAACATCTCCTGACTAGTTTTTTGGATGCTGAAGATTTGCTGGACAAGATCGGTTTGGGACTGGAAAGAATGGCTTGTTTGGATGTGGAGGTCAACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

107

Amino Acids

11.88

Weight (kDa)

4.97

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	18 - 97	8.4e-11	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	3 cut(s)	38, 173, 273
AfaI	GTAC	1 cut(s)	24
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	89, 139, 161
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	164, 215
AluI	AGCT	2 cut(s)	164, 215
Alw26I	GTCTC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	148, 206
ApoI	RAATTY	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	135, 218
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	93
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	149, 207
BlsI	GCNGC	2 cut(s)	150, 208
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	23, 204, 238
BmuI	ACTGGG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	115, 288
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	14, 253, 310
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	115, 288
BseXI	GCAGC	2 cut(s)	135, 218
Bsh1236I	CGCG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	115, 288
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	3 cut(s)	14, 253, 310
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 206, 212
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	135, 218
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	14, 253, 310
BtsIMutI	CAGTG	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	3 cut(s)	164, 215, 296
CviKI_1	RGCY	3 cut(s)	164, 215, 296
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	38, 173, 273
EcoRII	CCWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	104, 179
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	149, 207
FokI	GGATG	2 cut(s)	260, 317
Fsp4HI	GCNGC	2 cut(s)	149, 207
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	2 cut(s)	149, 207
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	3 cut(s)	67, 118, 316
HindII	GTYRAC	3 cut(s)	67, 118, 316
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	72, 157
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	4 cut(s)	67, 108, 118, 316
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	4 cut(s)	67, 108, 118, 316
Hpy99I	CGWCG	2 cut(s)	46, 122
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 206, 212
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	5, 32, 41, 46, 96, 245, 248, 269
Lsp1109I	GCAGC	2 cut(s)	135, 218
LweI	GCATC	3 cut(s)	23, 204, 238
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	41
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	4 cut(s)	44, 151, 166, 266
MluCI	AATT	2 cut(s)	48, 80
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	2 cut(s)	196, 304
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	11, 206, 212
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	106
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	150, 208
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	116
SatI	GCNGC	2 cut(s)	149, 207
Sau3AI	GATC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	5 cut(s)	44, 60, 166, 217, 315
SfaNI	GCATC	3 cut(s)	23, 204, 238
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	2 cut(s)	48, 80
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	117, 222
TasI	AATT	2 cut(s)	48, 80
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	148, 206
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.