Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000957.1

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Forward (+)

63140 .. 68254

Gene Structure 5115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000957.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atggcagagatagcatccctggtactctcgaccggcattacgtcggcaattcttcaggttgttgttgacagagtcgcaaaatttgttgaacaaaagagagacatgttcactggggtcgacgacaatctcagaaagttgaagagaacgctgatgaagattcaagctcgtgttgatgatatagaaaagaaacattgcatcacggaggcagcagaagatttactggaagatctgctgactagttttttggatgctgaagatttgctggacaagatcggtttgggactggaaaggatgacttgtttggatgtggaggtcaacagttggagtcaggtacatcacttgatccccttctattctggcataccgtctgagattaaaaagatgcaagtgaaattggatgagttagtaacagaactagaaagctaccctaccacggaagtcatccggttgagaaagcctatggaaaaggctattgctccttgtacttctttggttgatgaatcttgtgtatttggaagggaaacagataagaacaagatgaaaaaaatggtcttgtctctgcaagtagaggggggaaatgtttctgtaatttcaatagtagggatggccgggattgggaaaacaacacttacccaactcatctacaatgatgcagatgtgcataagaaatttgatttgaaaatgtgggtgtctgtttctttagagtgtggtctgtacatgattacaaaatctattcttgagtctgctactagaggaaagggttctcagttgtcaagtttggatagtgttcagattgaattacagaagacattgaaggggaagaggtttttacttgtactagatggcatttgtaatgataatcttagtgattgggatcaattcaagttgtcttttggggctgcaaagaagggcagcaagattatgatgactactcgaagtgaaatttctgcctcagttgttgcctctacattatatcgtttggatcctctgtgtgacaatgcttgttgggaaataatcaaacaaagagggaatcttaatgggcagactaatttggaggcgaatggcctagcaatttcgaagaagtgcaaagggtttccatgggtagcaaaagtgattggaagctgtttgaattcgggagagatggagtgggatgctctgttaagttcgcacgctgatgatgtccgtcagaatttgtttgaatcggagtcaagtttaggcgaaagactagctttttctgcctttcagaggtctcctcagtgttgtggcactggtagtgatgtttcagatattcctatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

432

Amino Acids

47.81

Weight (kDa)

5.51

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AclWI	GGATC	4 cut(s)	337, 882, 977, 990
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	5 cut(s)	80, 668, 942, 1129, 1189
AcuI	CTGAAG	2 cut(s)	38, 273
AfaI	GTAC	5 cut(s)	24, 333, 484, 716, 837
AfiI	CCNNNNNNNGG	3 cut(s)	433, 615, 1245
AflIII	ACRYGT	1 cut(s)	102
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	164, 423, 1122, 1229
AluI	AGCT	4 cut(s)	164, 423, 1122, 1229
Alw26I	GTCTC	3 cut(s)	93, 561, 1254
AlwI	GGATC	4 cut(s)	337, 882, 977, 990
AoxI	GGCC	2 cut(s)	606, 1063
ApeKI	GCWGC	3 cut(s)	206, 899, 912
ApoI	RAATTY	5 cut(s)	80, 668, 942, 1129, 1189
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
Asp700I	GAANNNNTTC	2 cut(s)	580, 760
AsuC2I	CCSGG	1 cut(s)	610
AsuII	TTCGAA	1 cut(s)	1076
BamHI	GGATCC	1 cut(s)	982
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	3 cut(s)	218, 886, 924
BccI	CCATC	3 cut(s)	598, 836, 1135
BciT130I	CCWGG	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	93, 561, 1254
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	6 cut(s)	237, 416, 750, 839, 1067, 1226
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	3 cut(s)	207, 900, 913
BlsI	GCNGC	3 cut(s)	208, 901, 914
Bme1390I	CCNGG	2 cut(s)	20, 610
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	2 cut(s)	20, 610
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	6 cut(s)	23, 204, 238, 372, 640, 1141
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	1237, 1269
Bpu14I	TTCGAA	1 cut(s)	1076
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	873
BsaI	GGTCTC	1 cut(s)	1254
BsaJI	CCNNGG	3 cut(s)	18, 432, 1097
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 615, 1245
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	4 cut(s)	115, 225, 288, 1273
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	18, 432, 1097
BseGI	GGATG	8 cut(s)	14, 253, 297, 310, 403, 441, 609, 1156
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	3 cut(s)	433, 615, 1245
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	5 cut(s)	142, 360, 779, 966, 1268
BseNI	ACTGG	4 cut(s)	115, 225, 288, 1273
BseRI	GAGGAG	1 cut(s)	1242
BseXI	GCAGC	3 cut(s)	218, 886, 924
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	608, 1065
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	3 cut(s)	33, 445, 609
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	433, 615, 1245
BsmAI	GTCTC	3 cut(s)	93, 561, 1254
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	608, 1065
Bso31I	GGTCTC	1 cut(s)	1254
Bsp119I	TTCGAA	1 cut(s)	1076
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	5 cut(s)	226, 270, 342, 874, 982
Bsp19I	CCATGG	1 cut(s)	1097
BspANI	GGCC	2 cut(s)	608, 1065
BspCNI	CTCAG	5 cut(s)	141, 361, 778, 965, 1267
BspLI	GGNNCC	1 cut(s)	984
BspPI	GGATC	4 cut(s)	337, 882, 977, 990
BspT104I	TTCGAA	1 cut(s)	1076
BspTNI	GGTCTC	1 cut(s)	1254
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	4 cut(s)	115, 225, 288, 1273
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	18, 432, 1097
BssMI	GATC	5 cut(s)	226, 270, 342, 874, 982
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	1097
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	320, 366
Bst6I	CTCTTC	2 cut(s)	134, 815
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	1076
BstC8I	GCNNGC	1 cut(s)	1170
BstDEI	CTNAG	6 cut(s)	128, 369, 765, 863, 952, 1254
BstDSI	CCRYGG	2 cut(s)	432, 1097
BstENI	CCTNNNNNAGG	1 cut(s)	1243
BstF5I	GGATG	8 cut(s)	14, 253, 297, 310, 403, 441, 609, 1156
BstKTI	GATC	5 cut(s)	229, 273, 345, 877, 985
BstMAI	GTCTC	3 cut(s)	93, 561, 1254
BstMBI	GATC	5 cut(s)	226, 270, 342, 874, 982
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 1235
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	18, 608
BstV1I	GCAGC	3 cut(s)	218, 886, 924
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	2 cut(s)	226, 982
BstYI	RGATCY	2 cut(s)	226, 982
BsuRI	GGCC	2 cut(s)	608, 1065
BtgI	CCRYGG	2 cut(s)	432, 1097
BtsCI	GGATG	8 cut(s)	14, 253, 297, 310, 403, 441, 609, 1156
BtsIMutI	CAGTG	3 cut(s)	108, 1262, 1266
Cac8I	GCNNGC	1 cut(s)	1170
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	5 cut(s)	23, 332, 483, 715, 836
CviAII	CATG	3 cut(s)	103, 718, 1098
CviJI	RGCY	9 cut(s)	164, 423, 457, 470, 608, 899, 1065, 1122, 1229
CviKI_1	RGCY	9 cut(s)	164, 423, 457, 470, 608, 899, 1065, 1122, 1229
CviQI	GTAC	5 cut(s)	23, 332, 483, 715, 836
DdeI	CTNAG	6 cut(s)	128, 369, 765, 863, 952, 1254
DpnI	GATC	5 cut(s)	228, 272, 344, 876, 984
DpnII	GATC	5 cut(s)	226, 270, 342, 874, 982
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	2 cut(s)	134, 815
EarI	CTCTTC	2 cut(s)	134, 815
Eco130I	CCWWGG	1 cut(s)	1097
Eco31I	GGTCTC	1 cut(s)	1254
Eco57I	CTGAAG	2 cut(s)	38, 273
EcoNI	CCTNNNNNAGG	1 cut(s)	1243
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	1097
ErhI	CCWWGG	1 cut(s)	1097
FaeI	CATG	3 cut(s)	106, 721, 1101
FalI	AAGNNNNNCTT	4 cut(s)	280, 312, 1213, 1245
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	3 cut(s)	102, 717, 1097
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	207, 900, 913
FokI	GGATG	7 cut(s)	260, 304, 317, 410, 428, 616, 1163
Fsp4HI	GCNGC	3 cut(s)	207, 900, 913
FspBI	CTAG	6 cut(s)	237, 416, 750, 839, 1067, 1226
GluI	GCNGC	3 cut(s)	207, 900, 913
HaeIII	GGCC	2 cut(s)	608, 1065
HapII	CCGG	3 cut(s)	33, 445, 609
Hin1II	CATG	3 cut(s)	106, 721, 1101
HincII	GTYRAC	3 cut(s)	67, 118, 316
HindII	GTYRAC	3 cut(s)	67, 118, 316
HinfI	GANTC	8 cut(s)	72, 157, 325, 500, 740, 1030, 1199, 1205
HpaII	CCGG	3 cut(s)	33, 445, 609
Hpy166II	GTNNAC	4 cut(s)	67, 108, 118, 316
Hpy188I	TCNGA	7 cut(s)	131, 370, 792, 1188, 1204, 1245, 1285
Hpy188III	TCNNGA	3 cut(s)	28, 737, 1134
Hpy8I	GTNNAC	4 cut(s)	67, 108, 118, 316
Hpy99I	CGWCG	2 cut(s)	46, 122
HpyAV	CCTTC	4 cut(s)	358, 510, 808, 901
HpyCH4III	ACNGT	2 cut(s)	320, 366
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	7 cut(s)	195, 385, 562, 653, 661, 902, 1086
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 1235
HpyF3I	CTNAG	6 cut(s)	128, 369, 765, 863, 952, 1254
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	106, 721, 1101
Kzo9I	GATC	5 cut(s)	226, 270, 342, 874, 982
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	3 cut(s)	218, 886, 924
LweI	GCATC	6 cut(s)	23, 204, 238, 372, 640, 1141
MaeI	CTAG	6 cut(s)	237, 416, 750, 839, 1067, 1226
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	406, 992
MalI	GATC	5 cut(s)	228, 272, 344, 876, 984
MboI	GATC	5 cut(s)	226, 270, 342, 874, 982
MboII	GAAGA	9 cut(s)	44, 151, 166, 224, 236, 266, 817, 832, 1090
MflI	RGATCY	2 cut(s)	226, 982
MlyI	GAGTC	4 cut(s)	81, 334, 749, 1214
MmeI	TCCRAC	1 cut(s)	302
MroXI	GAANNNNTTC	2 cut(s)	580, 760
MseI	TTAA	3 cut(s)	375, 1035, 1160
MslI	CAYNNNNRTG	1 cut(s)	1173
MspI	CCGG	3 cut(s)	33, 445, 609
MspR9I	CCNGG	2 cut(s)	20, 610
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	11, 1235
NciI	CCSGG	1 cut(s)	610
NcoI	CCATGG	1 cut(s)	1097
NdeII	GATC	5 cut(s)	226, 270, 342, 874, 982
NlaIII	CATG	3 cut(s)	106, 721, 1101
NlaIV	GGNNCC	1 cut(s)	984
NmuCI	GTSAC	1 cut(s)	992
NspI	RCATGY	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	1076
PciI	ACATGT	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	580, 760
PfeI	GAWTC	4 cut(s)	157, 500, 1030, 1199
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	208, 901, 914
PleI	GAGTC	4 cut(s)	80, 333, 748, 1213
PpsI	GAGTC	4 cut(s)	80, 333, 748, 1213
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	984
PsuI	RGATCY	2 cut(s)	226, 982
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	5 cut(s)	24, 333, 484, 716, 837
RsaNI	GTAC	5 cut(s)	23, 332, 483, 715, 836
RseI	CAYNNNNRTG	1 cut(s)	1173
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	375, 1035, 1160
SatI	GCNGC	3 cut(s)	207, 900, 913
Sau3AI	GATC	5 cut(s)	226, 270, 342, 874, 982
SchI	GAGTC	4 cut(s)	81, 334, 749, 1214
ScrFI	CCNGG	2 cut(s)	20, 610
SfaNI	GCATC	6 cut(s)	23, 204, 238, 372, 640, 1141
SfuI	TTCGAA	1 cut(s)	1076
SmiMI	CAYNNNNRTG	1 cut(s)	1173
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	236
SspMI	CTAG	6 cut(s)	237, 416, 750, 839, 1067, 1226
StyD4I	CCNGG	2 cut(s)	18, 608
StyI	CCWWGG	1 cut(s)	1097
TaaI	ACNGT	2 cut(s)	320, 366
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	4 cut(s)	29, 117, 934, 1076
TatI	WGTACW	3 cut(s)	482, 714, 835
TfiI	GAWTC	4 cut(s)	157, 500, 1030, 1199
Tru1I	TTAA	3 cut(s)	375, 1035, 1160
Tru9I	TTAA	3 cut(s)	375, 1035, 1160
TscAI	CASTG	3 cut(s)	115, 1262, 1273
TseFI	GTSAC	1 cut(s)	992
TseI	GCWGC	3 cut(s)	206, 899, 912
Tsp45I	GTSAC	1 cut(s)	992
TspDTI	ATGAA	3 cut(s)	167, 513, 554
TspGWI	ACGGA	3 cut(s)	215, 449, 1172
TspRI	CASTG	3 cut(s)	115, 1262, 1273
Tth111I	GACNNNGTC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	1243
XapI	RAATTY	5 cut(s)	80, 668, 942, 1129, 1189
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	2 cut(s)	580, 760
XspI	CTAG	6 cut(s)	237, 416, 750, 839, 1067, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.