Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Forward (+)

18441313 .. 18444735

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG202500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGGAGTTTCTCAGTATATTTCTCTCGATCGGCCTTACATCCGCATTTCTGCAGGTCTTTGTGGAGAAACTTGCAAACTACTGTATTAAGAAGATAGGCAAGACTCGCAAGTTGCACGACAATCTCCAAAAGCTGGCAAGAACACTGTTGAAAATTCAATCTCTGATAGATGATGTAGAAAACAAGCACTCCATCTCCAATGCTTGCCGGATTTTAATCGAAGAATTCCGGAGTGTTGTCCTTGATGCAGATGATTTGCTCGATGAGATTGTTGCTGAGGAGACAAAGCCCTCCAAATCGATCAAGAGCAAGGTAACTGATATGCTTAAGAGAGTGCAGGAGTTGGCTGCAGAAGTGGAGGTTTATTTCATCGCAGAAATATCAAAGCCGAGACCTCGTCAAGCTTTGGCTATTCCTCATGGTAGTTCTCTGGTCGATGAGTCCTCTGTGGTTGGAAGGAAAGAAGAAAAGGAGAAGCTCATCAACTGGTTGGTAGCTGACAATACAAAACCAAACTCTCACCAAGATGTTTCTGTGAGTTCAATAGTTGGTATGGGTGGCACGGGGAAAACAACACTTGCTCAACTCATCTACAATGATTCAACTGTGGCTGAGAAATTTCCTTTGAGAATGTGGGTATGTGTTTCCCTAGACTATGATTTGGTTAAAATCACTAAATCAATCCTTGAGTCCGCCAACAAGAAAGTTTCGGAGTTGTCAGATCTTGATTCTATTCAGAATCAACTAGAGAAGGTCATCAACACCAAGTTTTTACTTGTATTAGATGACATGTGGAATGAAAACCCGGTTGACTGGGATGCCTTGAAGTTGTTGTTTAGATTTGCAGGGTCTGGGAGCAAGGTTGTGGTAACTACTCGAAGTAAAATTGTTTCATCCATTGTTACAACTACTCCTAGTAATATTCATATTTTGAATGCTATGCCTATTGAAGATTGTGAGGAAATTATCAAGAAAATCTTGAGACCGAGTATTGCTGAACCAGGTAATTTAACGAAGATGGCGGCCAAGTGCAAAGGTCTTCCTTTGGCGGCCAAAGTCATTGGAAATGCTCTGCGTTTCAAGTCACAAGAGGAGTGGGATGCCCTGCTAAAATTTGATTTTTGGAACTTGGCCGAAGATAAGAACTATATCTATCCAGTACTTAAGCTTAGCTATGATCATTTGCCACCTTATTTGAAAAGATGTTTCGCTTATTGTTCAATTTTCCCTCTTGGTCATCGATTTCAAGTGGATGATTTAATCCAATTGTGGGCAGCAGAAGGCTTCATCCAAGCCCAAGGGACAAGAAGAATTGAAGACATCGGAAGGGACTACTTCCACGAATTGTTTGCGAGCTCCTTTTTTGAAATTTCAGAAAATGGTAGTGGTGAACGAGTGTATAAAATGCATGACTTTATTCACTACTTGGCGAGATTGGTTTCTACAAACTTATGCTTTCGTTCGGAGGAGAATATATTGTGGCCCATATCTAGAACTGTTCGGCATTGGTCTTTGCCTCATCAAAATGTTCGAAAAGAGACGTGGGAAGAATTCCAAAGGTATGACAAACTGAGGACATTTATCTTGCTTTCTGAAACCCCATCTAATCTTGTCGAAGTCCCTGTAAATTTTTTTGAAAAGATGCGTTGCCTAAGGGTTCTGAATTTGAGCAATAGTGGCATATCTAGCTTGTCTGATGGTTTTGCAAAATTGATACACCTTTGTTACCTCAATCTCAGTGGTAACGCTTTCAAAAAGTTGCCAGAGTCTATAGCAAATATACATGGGTTAGAAACACTTAAGCTGAATGATTGTCCTCAACTTCTTGAATTGCCGGAGAACTTAATGAAGTTGATTAAGCTGCGACATTTTTCGTTTGAGAGATGTCCCAGAATCACTTCCATGCCAAAAGATGTGGGGAGATTAACTAGTCTACAAACAGTAGATGTCTTTATAGTGGGAAGAACCACAGGATATCGAATTGAGGAGCTTAAGAACATGAAGTTTCTTGGTGCTGTTGGCATTAAACAACTTGAGAATGTGAAAAATCGCCAGTCTGCTATGGATGCTGAGTTGGAGAACAAGCAATATCTAAACAAGTTAGAGTTGTTGTGGACAAGGGGAAATCGGGGTGCAAACATTGAAAGAGAAGTTCTTGATGGTCTTAAACCTCATGATGGTTTGAAAAAGTTGAAAGTAACAGGTTATTGTGGTATAGAATTCCCAGATTGGATAGGTTCAGCACCATCAGTTTGCAAGCTCGTTAGTCTTTGCATTCATTCTTGTTCAAAACTGGAAACTCTACCTTCATTTGATTGCCTAACTTTGCTTAAAGTGCTAGAGATTGGCAATTGCCCTGAACTTCAATCATTGCCGGCAGGAGAACTACCTAGGTCACTTGAAAGTTTGACAATTTGGGGTAGTCAGGCTCTAGAGGACCGGTGCGAAAGCAGTAGTGGTGCAGATTGGAACCGGATCAAATGGATCCCCACCATAGTGATTGATCATCAGATAATTCAGAGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

842

Amino Acids

95.58

Weight (kDa)

7.23

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	16 - 103	5e-14	Rx N-terminal domain
NB-ARC	PF00931	154 - 326	8.6e-30	NB-ARC domain
WHD_DRP	PF23559	408 - 477	5.4e-22	Disease resistance protein Winged helix domain
LRR_8	PF13855	536 - 582	5.9e-06	Leucine rich repeat
LRR_14	PF23598	544 - 777	1e-25	Leucine-rich repeat region
LRR_8	PF13855	551 - 605	8.3e-08	Leucine rich repeat
LRR_R13L1-DRL21	PF25019	661 - 785	8e-32	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	1933
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	4 cut(s)	42, 693, 1022, 1049
AclWI	GGATC	3 cut(s)	2479, 2483, 2492
AcoI	YGGCCR	3 cut(s)	1023, 1050, 1131
AcsI	RAATTY	9 cut(s)	153, 224, 617, 1112, 1368, 1550, 1627, 1663, 2219
AfaI	GTAC	1 cut(s)	1161
AfiI	CCNNNNNNNGG	3 cut(s)	133, 1270, 2177
AflII	CTTAAG	4 cut(s)	326, 1163, 1799, 1991
AflIII	ACRYGT	1 cut(s)	789
AgeI	ACCGGT	1 cut(s)	2439
AhlI	ACTAGT	1 cut(s)	1928
AjiI	CACGTC	1 cut(s)	1542
AjnI	CCWGG	1 cut(s)	1000
AleI	CACNNNNGTG	1 cut(s)	2495
Alw21I	GWGCWC	1 cut(s)	1358
Alw26I	GTCTC	4 cut(s)	275, 385, 976, 1532
AlwI	GGATC	3 cut(s)	2479, 2483, 2492
AlwNI	CAGNNNCTG	1 cut(s)	851
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	5 cut(s)	31, 1023, 1050, 1131, 1481
ApeKI	GCWGC	3 cut(s)	347, 1274, 1861
ApoI	RAATTY	9 cut(s)	153, 224, 617, 1112, 1368, 1550, 1627, 1663, 2219
AsiGI	ACCGGT	1 cut(s)	2439
Asp700I	GAANNNNTTC	1 cut(s)	1897
AspA2I	CCTAGG	1 cut(s)	2390
AspS9I	GGNCC	2 cut(s)	1482, 2437
AsuC2I	CCSGG	1 cut(s)	806
AsuHPI	GGTGA	2 cut(s)	512, 1400
AsuII	TTCGAA	1 cut(s)	1531
AvaII	GGWCC	1 cut(s)	2437
AvrII	CCTAGG	1 cut(s)	2390
AxyI	CCTNAGG	1 cut(s)	1652
BamHI	GGATCC	1 cut(s)	2484
BanII	GRGCYC	1 cut(s)	1358
BbsI	GAAGAC	2 cut(s)	1031, 1323
Bbv12I	GWGCWC	1 cut(s)	1358
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	334, 1286, 1848
BccI	CCATC	7 cut(s)	200, 1012, 1609, 1691, 2153, 2171, 2254
BcgI	CGANNNNNNTGC	2 cut(s)	1331, 1365
BciT130I	CCWGG	1 cut(s)	1002
BclI	TGATCA	2 cut(s)	1177, 2503
BcnI	CCSGG	1 cut(s)	806
BcoDI	GTCTC	4 cut(s)	275, 385, 976, 1532
BcuI	ACTAGT	1 cut(s)	1928
BfaI	CTAG	9 cut(s)	650, 746, 915, 1491, 1686, 1929, 2339, 2391, 2432
BfmI	CTRYAG	3 cut(s)	50, 348, 1770
BfrI	CTTAAG	4 cut(s)	326, 1163, 1799, 1991
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	5 cut(s)	348, 1023, 1050, 1275, 1862
BlnI	CCTAGG	1 cut(s)	2390
BlpI	GCTNAGC	1 cut(s)	1169
BlsI	GCNGC	5 cut(s)	349, 1024, 1051, 1276, 1863
BmcAI	AGTACT	1 cut(s)	1161
Bme1390I	CCNGG	2 cut(s)	806, 1002
Bme18I	GGWCC	1 cut(s)	2437
BmgBI	CACGTC	1 cut(s)	1542
BmgT120I	GGNCC	2 cut(s)	1482, 2437
BmiI	GGNNCC	2 cut(s)	2471, 2486
BmrFI	CCNGG	2 cut(s)	806, 1002
BmrI	ACTGGG	1 cut(s)	823
BmsI	GCATC	5 cut(s)	235, 808, 1090, 1632, 2056
BmuI	ACTGGG	1 cut(s)	823
BpiI	GAAGAC	2 cut(s)	1031, 1323
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	1169
Bpu14I	TTCGAA	1 cut(s)	1531
BpuEI	CTTGAG	3 cut(s)	707, 1000, 2054
BpuMI	CCSGG	1 cut(s)	806
Bsa29I	ATCGAT	2 cut(s)	299, 1240
BsaBI	GATNNNNATC	1 cut(s)	215
BsaI	GGTCTC	2 cut(s)	385, 976
BsaJI	CCNNGG	2 cut(s)	1297, 2390
BsaWI	WCCGGW	3 cut(s)	228, 2439, 2472
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 179, 203, 209, 895, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 1270, 2177
Bse118I	RCCGGY	2 cut(s)	2374, 2439
Bse1I	ACTGG	5 cut(s)	491, 818, 1157, 2053, 2298
Bse21I	CCTNAGG	1 cut(s)	1652
Bse3DI	GCAATG	1 cut(s)	2369
Bse8I	GATNNNNATC	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	1002
BseCI	ATCGAT	2 cut(s)	299, 1240
BseDI	CCNNGG	2 cut(s)	1297, 2390
BseGI	GGATG	7 cut(s)	38, 823, 893, 1105, 1258, 1287, 2071
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	3 cut(s)	133, 1270, 2177
BseMI	GCAATG	1 cut(s)	2369
BseMII	CTCAG	6 cut(s)	25, 267, 603, 1562, 1750, 2061
BseNI	ACTGG	5 cut(s)	491, 818, 1157, 2053, 2298
BseRI	GAGGAG	4 cut(s)	293, 1106, 1481, 2000
BseXI	GCAGC	3 cut(s)	334, 1286, 1848
BsgI	GTGCAG	2 cut(s)	356, 2481
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	5 cut(s)	33, 1025, 1052, 1133, 1483
BshTI	ACCGGT	1 cut(s)	2439
BshVI	ATCGAT	2 cut(s)	299, 1240
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	1358
BsiSI	CCGG	7 cut(s)	208, 229, 806, 1835, 2375, 2440, 2473
BslFI	GGGAC	4 cut(s)	1315, 1343, 1604, 1872
BslI	CCNNNNNNNGG	3 cut(s)	133, 1270, 2177
BsmAI	GTCTC	4 cut(s)	275, 385, 976, 1532
BsmBI	CGTCTC	1 cut(s)	1532
BsmFI	GGGAC	4 cut(s)	1315, 1343, 1604, 1872
BsmI	GAATGC	2 cut(s)	940, 2274
BsnI	GGCC	5 cut(s)	33, 1025, 1052, 1133, 1483
Bso31I	GGTCTC	2 cut(s)	385, 976
Bsp119I	TTCGAA	1 cut(s)	1531
Bsp1286I	GDGCHC	1 cut(s)	1358
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
Bsp1720I	GCTNAGC	1 cut(s)	1169
BspACI	CCGC	4 cut(s)	42, 693, 1022, 1049
BspANI	GGCC	5 cut(s)	33, 1025, 1052, 1133, 1483
BspCNI	CTCAG	6 cut(s)	24, 268, 604, 1563, 1749, 2062
BspDI	ATCGAT	2 cut(s)	299, 1240
BspEI	TCCGGA	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	2173
BspLI	GGNNCC	2 cut(s)	2471, 2486
BspMAI	CTGCAG	2 cut(s)	54, 352
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	2479, 2483, 2492
BspT104I	TTCGAA	1 cut(s)	1531
BspTI	CTTAAG	4 cut(s)	326, 1163, 1799, 1991
BspTNI	GGTCTC	2 cut(s)	385, 976
BsrDI	GCAATG	1 cut(s)	2369
BsrFI	RCCGGY	2 cut(s)	2374, 2439
BsrI	ACTGG	5 cut(s)	491, 818, 1157, 2053, 2298
BssAI	RCCGGY	2 cut(s)	2374, 2439
BssECI	CCNNGG	2 cut(s)	1297, 2390
BssMI	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
BssT1I	CCWWGG	2 cut(s)	1297, 2390
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	5 cut(s)	83, 147, 607, 1498, 1942
BstAFI	CTTAAG	4 cut(s)	326, 1163, 1799, 1991
BstBI	TTCGAA	1 cut(s)	1531
BstC8I	GCNNGC	5 cut(s)	135, 205, 1354, 2258, 2376
BstDEI	CTNAG	8 cut(s)	11, 276, 612, 1169, 1571, 1652, 1736, 2070
BstF5I	GGATG	7 cut(s)	38, 823, 893, 1105, 1258, 1287, 2071
BstKTI	GATC	7 cut(s)	30, 303, 724, 1180, 2478, 2487, 2506
BstMAI	GTCTC	4 cut(s)	275, 385, 976, 1532
BstMBI	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 1677, 1686, 2066, 2335
BstNI	CCWGG	1 cut(s)	1002
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	2 cut(s)	804, 1000
BstSFI	CTRYAG	3 cut(s)	50, 348, 1770
BstV1I	GCAGC	3 cut(s)	334, 1286, 1848
BstV2I	GAAGAC	2 cut(s)	1031, 1323
BstX2I	RGATCY	2 cut(s)	721, 2484
BstYI	RGATCY	2 cut(s)	721, 2484
Bsu15I	ATCGAT	2 cut(s)	299, 1240
Bsu36I	CCTNAGG	1 cut(s)	1652
BsuRI	GGCC	5 cut(s)	33, 1025, 1052, 1133, 1483
BsuTUI	ATCGAT	2 cut(s)	299, 1240
BtgZI	GCGATG	1 cut(s)	355
BtrI	CACGTC	1 cut(s)	1542
BtsCI	GGATG	7 cut(s)	38, 823, 893, 1105, 1258, 1287, 2071
BtsIMutI	CAGTG	2 cut(s)	143, 1744
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	135, 205, 1354, 2258, 2376
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	1 cut(s)	2173
Cfr10I	RCCGGY	2 cut(s)	2374, 2439
Cfr13I	GGNCC	2 cut(s)	1482, 2437
ClaI	ATCGAT	2 cut(s)	299, 1240
CsiI	ACCWGGT	1 cut(s)	1000
Csp6I	GTAC	1 cut(s)	1160
CspAI	ACCGGT	1 cut(s)	2439
CspCI	CAANNNNNGTGG	8 cut(s)	1076, 1111, 1176, 1211, 1720, 1755, 1896, 1931
CviAII	CATG	7 cut(s)	419, 790, 1409, 1784, 1903, 1999, 2174
CviQI	GTAC	1 cut(s)	1160
DdeI	CTNAG	8 cut(s)	11, 276, 612, 1169, 1571, 1652, 1736, 2070
DpnI	GATC	7 cut(s)	29, 302, 723, 1179, 2477, 2486, 2505
DpnII	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
EaeI	YGGCCR	3 cut(s)	1023, 1050, 1131
EciI	GGCGGA	1 cut(s)	682
Ecl136II	GAGCTC	1 cut(s)	1356
Eco130I	CCWWGG	2 cut(s)	1297, 2390
Eco24I	GRGCYC	1 cut(s)	1358
Eco31I	GGTCTC	2 cut(s)	385, 976
Eco32I	GATATC	1 cut(s)	1976
Eco47I	GGWCC	1 cut(s)	2437
Eco53kI	GAGCTC	1 cut(s)	1356
Eco81I	CCTNAGG	1 cut(s)	1652
EcoICRI	GAGCTC	1 cut(s)	1356
EcoRI	GAATTC	3 cut(s)	224, 1550, 2219
EcoRII	CCWGG	1 cut(s)	1000
EcoRV	GATATC	1 cut(s)	1976
EcoT14I	CCWWGG	2 cut(s)	1297, 2390
EcoT22I	ATGCAT	1 cut(s)	1410
EcoT38I	GRGCYC	1 cut(s)	1358
ErhI	CCWWGG	2 cut(s)	1297, 2390
Esp3I	CGTCTC	1 cut(s)	1532
FaeI	CATG	7 cut(s)	422, 793, 1412, 1787, 1906, 2002, 2177
FalI	AAGNNNNNCTT	2 cut(s)	962, 994
FaqI	GGGAC	4 cut(s)	1315, 1343, 1604, 1872
FatI	CATG	7 cut(s)	418, 789, 1408, 1783, 1902, 1998, 2173
FbaI	TGATCA	2 cut(s)	1177, 2503
FblI	GTMKAC	1 cut(s)	1933
Fnu4HI	GCNGC	5 cut(s)	348, 1023, 1050, 1275, 1862
FokI	GGATG	7 cut(s)	25, 830, 880, 1112, 1265, 1274, 2078
FriOI	GRGCYC	1 cut(s)	1358
Fsp4HI	GCNGC	5 cut(s)	348, 1023, 1050, 1275, 1862
FspBI	CTAG	9 cut(s)	650, 746, 915, 1491, 1686, 1929, 2339, 2391, 2432
GluI	GCNGC	5 cut(s)	348, 1023, 1050, 1275, 1862
HaeIII	GGCC	5 cut(s)	33, 1025, 1052, 1133, 1483
HapII	CCGG	7 cut(s)	208, 229, 806, 1835, 2375, 2440, 2473
Hin1II	CATG	7 cut(s)	422, 793, 1412, 1787, 1906, 2002, 2177
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	2 cut(s)	402, 1166
HinfI	GANTC	9 cut(s)	103, 440, 599, 689, 728, 739, 1766, 1893, 2521
HpaII	CCGG	7 cut(s)	208, 229, 806, 1835, 2375, 2440, 2473
HphI	GGTGA	2 cut(s)	512, 1400
Hpy166II	GTNNAC	4 cut(s)	811, 1391, 1934, 2115
Hpy8I	GTNNAC	4 cut(s)	811, 1391, 1934, 2115
HpyAV	CCTTC	5 cut(s)	450, 745, 1274, 1320, 2316
HpyCH4III	ACNGT	5 cut(s)	83, 147, 607, 1498, 1942
HpyCH4IV	ACGT	1 cut(s)	1541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 1677, 1686, 2066, 2335
HpyF3I	CTNAG	8 cut(s)	11, 276, 612, 1169, 1571, 1652, 1736, 2070
HpySE526I	ACGT	1 cut(s)	1541
Hsp92II	CATG	7 cut(s)	422, 793, 1412, 1787, 1906, 2002, 2177
Kpn2I	TCCGGA	1 cut(s)	228
KroI	GCCGGC	1 cut(s)	2374
KroNI	GCCGGC	1 cut(s)	2376
Ksp22I	TGATCA	2 cut(s)	1177, 2503
Kzo9I	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
LmnI	GCTCC	3 cut(s)	855, 1361, 1987
Lsp1109I	GCAGC	3 cut(s)	334, 1286, 1848
LweI	GCATC	5 cut(s)	235, 808, 1090, 1632, 2056
MabI	ACCWGGT	1 cut(s)	1000
MaeI	CTAG	9 cut(s)	650, 746, 915, 1491, 1686, 1929, 2339, 2391, 2432
MaeII	ACGT	1 cut(s)	1541
MaeIII	GTNAC	8 cut(s)	313, 868, 901, 1083, 1724, 1742, 2197, 2394
MalI	GATC	7 cut(s)	29, 302, 723, 1179, 2477, 2486, 2505
MboI	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
MfeI	CAATTG	2 cut(s)	1265, 2350
MflI	RGATCY	2 cut(s)	721, 2484
MhlI	GDGCHC	1 cut(s)	1358
MlyI	GAGTC	4 cut(s)	97, 449, 698, 1775
MmeI	TCCRAC	2 cut(s)	433, 2055
Mph1103I	ATGCAT	1 cut(s)	1410
MroI	TCCGGA	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	2374
MroXI	GAANNNNTTC	1 cut(s)	1897
MslI	CAYNNNNRTG	4 cut(s)	525, 1524, 1901, 2495
MspCI	CTTAAG	4 cut(s)	326, 1163, 1799, 1991
MspI	CCGG	7 cut(s)	208, 229, 806, 1835, 2375, 2440, 2473
MspR9I	CCNGG	2 cut(s)	806, 1002
MunI	CAATTG	2 cut(s)	1265, 2350
Mva1269I	GAATGC	2 cut(s)	940, 2274
MvaI	CCWGG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	5 cut(s)	105, 1677, 1686, 2066, 2335
NaeI	GCCGGC	1 cut(s)	2376
NciI	CCSGG	1 cut(s)	806
NdeII	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
NgoMIV	GCCGGC	1 cut(s)	2374
NlaIII	CATG	7 cut(s)	422, 793, 1412, 1787, 1906, 2002, 2177
NlaIV	GGNNCC	2 cut(s)	2471, 2486
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	1083, 2394
NsiI	ATGCAT	1 cut(s)	1410
NspI	RCATGY	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	1531
OliI	CACNNNNGTG	1 cut(s)	2495
PagI	TCATGA	1 cut(s)	2173
PciI	ACATGT	1 cut(s)	789
PctI	GAATGC	2 cut(s)	940, 2274
PdiI	GCCGGC	1 cut(s)	2376
PdmI	GAANNNNTTC	1 cut(s)	1897
PfeI	GAWTC	4 cut(s)	599, 728, 739, 1893
PflFI	GACNNNGTC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	2439
PkrI	GCNGC	5 cut(s)	349, 1024, 1051, 1276, 1863
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	4 cut(s)	97, 448, 697, 1774
PpsI	GAGTC	4 cut(s)	97, 448, 697, 1774
PscI	ACATGT	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	1358
Psp6I	CCWGG	1 cut(s)	1000
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	2 cut(s)	2471, 2486
PspPI	GGNCC	2 cut(s)	1482, 2437
PstI	CTGCAG	2 cut(s)	54, 352
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	721, 2484
PsyI	GACNNNGTC	1 cut(s)	396
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	1161
RsaNI	GTAC	1 cut(s)	1160
RseI	CAYNNNNRTG	4 cut(s)	525, 1524, 1901, 2495
SacI	GAGCTC	1 cut(s)	1358
SatI	GCNGC	5 cut(s)	348, 1023, 1050, 1275, 1862
Sau3AI	GATC	7 cut(s)	27, 300, 721, 1177, 2475, 2484, 2503
Sau96I	GGNCC	2 cut(s)	1482, 2437
ScaI	AGTACT	1 cut(s)	1161
SchI	GAGTC	4 cut(s)	97, 449, 698, 1775
ScrFI	CCNGG	2 cut(s)	806, 1002
SduI	GDGCHC	1 cut(s)	1358
SexAI	ACCWGGT	1 cut(s)	1000
SfaNI	GCATC	5 cut(s)	235, 808, 1090, 1632, 2056
SfcI	CTRYAG	3 cut(s)	50, 348, 1770
SfuI	TTCGAA	1 cut(s)	1531
SinI	GGWCC	1 cut(s)	2437
SmiMI	CAYNNNNRTG	4 cut(s)	525, 1524, 1901, 2495
SmlI	CTYRAG	7 cut(s)	326, 686, 979, 1163, 1799, 1991, 2033
SmoI	CTYRAG	7 cut(s)	326, 686, 979, 1163, 1799, 1991, 2033
SpeI	ACTAGT	1 cut(s)	1928
SsiI	CCGC	4 cut(s)	42, 693, 1022, 1049
SspI	AATATT	1 cut(s)	922
SspMI	CTAG	9 cut(s)	650, 746, 915, 1491, 1686, 1929, 2339, 2391, 2432
SstI	GAGCTC	1 cut(s)	1358
StyD4I	CCNGG	2 cut(s)	804, 1000
StyI	CCWWGG	2 cut(s)	1297, 2390
TaaI	ACNGT	5 cut(s)	83, 147, 607, 1498, 1942
TaiI	ACGT	1 cut(s)	1544
TaqII	GACCGA	1 cut(s)	1000
TatI	WGTACW	1 cut(s)	1159
TauI	GCSGC	2 cut(s)	1025, 1052
TfiI	GAWTC	4 cut(s)	599, 728, 739, 1893
TscAI	CASTG	2 cut(s)	150, 1744
TseFI	GTSAC	2 cut(s)	1083, 2394
TseI	GCWGC	3 cut(s)	347, 1274, 1861
Tsp45I	GTSAC	2 cut(s)	1083, 2394
TspDTI	ATGAA	9 cut(s)	358, 813, 882, 914, 1276, 1862, 2015, 2267, 2298
TspRI	CASTG	2 cut(s)	150, 1744
Tth111I	GACNNNGTC	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	133
Vha464I	CTTAAG	4 cut(s)	326, 1163, 1799, 1991
VpaK11BI	GGWCC	1 cut(s)	2437
XapI	RAATTY	9 cut(s)	153, 224, 617, 1112, 1368, 1550, 1627, 1663, 2219
XbaI	TCTAGA	2 cut(s)	1490, 2431
XceI	RCATGY	1 cut(s)	793
XmaJI	CCTAGG	1 cut(s)	2390
XmiI	GTMKAC	1 cut(s)	1933
XmnI	GAANNNNTTC	1 cut(s)	1897
XspI	CTAG	9 cut(s)	650, 746, 915, 1491, 1686, 1929, 2339, 2391, 2432
ZrmI	AGTACT	1 cut(s)	1161
Zsp2I	ATGCAT	1 cut(s)	1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.