Rroxscaffold_1G00028630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001339
Physical Location & Seq
Reverse (-)
36539205 .. 36545391
6187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028630.1

Sequence Viewer

Length: 252 bp
ATGACTCTACCTCATGCCCAAAAACAAAACACAATGACTCGCCTCAAAGAATGCTCTAGATTTGCGTATCCGGATCCGGCATCCCTTCGGCAGCTGCAAATTGTGCTCTTCCGAAATTTTTTAACTATGTCGGAAGGTGGTGGTATGGGATCGACGATGATCTCGAGCGGTTGGACGAGTTTTGTTGAAAATTCGGTCTCGATCAACGACATTGAAAACAAGCACTCTATGTCCAAAGCCCGCAATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.37

Weight (kDa)

9.85

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 2 cut(s) 168, 241
AclWI GGATC 3 cut(s) 68, 81, 157
AcsI RAATTY 2 cut(s) 115, 190
AgsI TTSAA 2 cut(s) 188, 215
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 3 cut(s) 68, 81, 157
Ama87I CYCGRG 1 cut(s) 163
Aor13HI TCCGGA 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 91, 94
ApoI RAATTY 2 cut(s) 115, 190
AvaI CYCGRG 1 cut(s) 163
BamHI GGATCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 81, 103
BciVI GTATCC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 57
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 2 cut(s) 92, 95
BlsI GCNGC 2 cut(s) 93, 96
BmeT110I CYCGRG 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 70
BseAI TCCGGA 1 cut(s) 70
BseGI GGATG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 81, 103
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 2 cut(s) 71, 77
BsmAI GTCTC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 108
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 4 cut(s) 73, 149, 159, 201
BspACI CCGC 2 cut(s) 168, 241
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 3 cut(s) 68, 81, 157
BspQI GCTCTTC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 168
BssMI GATC 4 cut(s) 73, 149, 159, 201
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 80
BstKTI GATC 4 cut(s) 76, 152, 162, 204
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 73, 149, 159, 201
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 81, 103
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuI GTATCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 241
CviAII CATG 1 cut(s) 14
CviJI RGCY 2 cut(s) 94, 239
CviKI_1 RGCY 2 cut(s) 94, 239
DpnI GATC 4 cut(s) 75, 151, 161, 203
DpnII GATC 4 cut(s) 73, 149, 159, 201
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 163
FaeI CATG 1 cut(s) 17
FaiI YATR 4 cut(s) 15, 128, 146, 230
FatI CATG 1 cut(s) 13
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 92, 95
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 92, 95
FspBI CTAG 1 cut(s) 57
GluI GCNGC 2 cut(s) 92, 95
HapII CCGG 2 cut(s) 71, 77
Hin1II CATG 1 cut(s) 17
HinfI GANTC 2 cut(s) 4, 37
HpaII CCGG 2 cut(s) 71, 77
Hpy188I TCNGA 2 cut(s) 113, 133
Hpy188III TCNNGA 4 cut(s) 57, 71, 163, 199
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 95, 128
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
Hsp92II CATG 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 73, 149, 159, 201
LguI GCTCTTC 1 cut(s) 113
LpnPI CCDG 2 cut(s) 84, 90
Lsp1109I GCAGC 2 cut(s) 81, 103
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 57
MalI GATC 4 cut(s) 75, 151, 161, 203
MbiI CCGCTC 1 cut(s) 168
MboI GATC 4 cut(s) 73, 149, 159, 201
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 3 cut(s) 99, 115, 190
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 111, 152
MnlI CCTC 2 cut(s) 21, 53
MroI TCCGGA 1 cut(s) 70
MseI TTAA 2 cut(s) 122, 250
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 2 cut(s) 71, 77
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 4 cut(s) 73, 149, 159, 201
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 75
PaeR7I CTCGAG 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PctI GAATGC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 93, 96
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 122, 250
SatI GCNGC 2 cut(s) 92, 95
Sau3AI GATC 4 cut(s) 73, 149, 159, 201
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 13, 96, 139
SfaNI GCATC 1 cut(s) 89
Sfr274I CTCGAG 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 99, 115, 190
SsiI CCGC 2 cut(s) 168, 241
SspMI CTAG 1 cut(s) 57
TaqI TCGA 3 cut(s) 152, 164, 200
TaqII GACCGA 1 cut(s) 184
TasI AATT 3 cut(s) 99, 115, 190
Tru1I TTAA 2 cut(s) 122, 250
Tru9I TTAA 2 cut(s) 122, 250
TseI GCWGC 2 cut(s) 91, 94
XapI RAATTY 2 cut(s) 115, 190
XbaI TCTAGA 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 163
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.