Rmu_sc0031691.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031691.1
OG0001339
Physical Location & Seq
Reverse (-)
1 .. 1980
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031691.1_g000001.1.cds

Sequence Viewer

Length: 1970 bp
atgatgactactcgaagtgaaatttctgcctcagttgttgcctctacattatatcgtttggatcctctgtgtgacaatgcttgttgggaaataatcaaacaaagagggaatcttaatgggcagactaatttggaggcgaatggcctagcaatttcgaagaagtgcaaagggtttccatgggtagcaaaagtgattggaagctgtttgaattcgggagagatggagtgggatgctctgttaaggtgtgagctttgggaactgcaggaacataaaacacaaatctatccagtcctcaaattgttgagctatgataatatgccttcttatttgaaaagatgtttcagttattgttctatctttcctcgtgatcatgtagttgagaaggatgatttggtccaactatgggcagcagaaggctttattcagtcccaaggaacaagaaaaattgaagatgttggaagacagtattttgaggacttgtgttcgagggctttcttttcgcaagttccaaatattggtggtgatctgcaaagatataaaatgcatgagctcattcatgatttggcaagatttgtttcaaccaacttatgcttttgtatggatgacaatgtgccatgcttggtgcacatatctcctaatgctcggcatgcgtctttgctctatggaaatactcaactatctacattggaggctttctacgagtataagaagttgaggacatttacattgcttcctaagtccccatctattccgaggccagtcatgttgcttcccaatttttcgtccaatcttggcgaagtccctcatgaattttttgaaaggttgggaagcttgagggtgttgaatttgagtcatagtgccatctctaaattgcctgaatctattggaaatttgatacatcttcgttacctcaatcttagtcatacccgtattgaactattgccaaagcctataacaacaatatatgggttagaaacattgaagctcaagagttgtcctaagcttcttcatttgcctgagaacttaaaggacttgattaagctaagacatcttgactttgacagacaccgtcaactaagttccatgccaaaagatgttgggaagttaactagtctcgaaacccttcatgcatttaaagtgggaaaagagaaaggatatcagattgaggagctcaagaacatgaggtgtcttcgtggatccatttctattacgaatcttgagaatgtggcagattctatgcaggctgaggctgctatgttacacaacaagcaatacttagacaggttggagctggaatggaatgcaatcagaggtcaaatgcaaccagttcaacaagaagttcttacagggcttaaaccacatgctgggttgaaggagttacgagtagctggttactgtggttcggtatttcccggatggatagccaactcagcatttagcaagcttgagagtattgaattagaaaattgcgcattttgtgaactccttccttctcttggccaacttccggctctcaagaaacttcttattcaaaatatggctactttgaaaggtgtggattatctgttttgtggttcctcagctgcttttctatccttagagacgctaacacttcgtgacatgccggagttgagtaactggtcaggactacgtgacaatgacatgcctttcctcagagacctcagcattgattcttgtccaaagttggccaccctaccttcatttcattacctaacttcacttcaatgtttagacatcaatcgttgccctcagcttcaatctttgccagagggaggactgccatcctcactcaaaactttggtcattatggagagtggcatcttgaaggatcggtgcaaggtgggagaaggtgcagattggaataagatcagatggatccctgccatattgattgaaaatatggtgattccagcacaaagaccggataaccaggtacttgacattggatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

656

Amino Acids

74.18

Weight (kDa)

7.21

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1471
AccB7I CCANNNNNTGG 2 cut(s) 515, 1364
AclWI GGATC 7 cut(s) 56, 69, 1191, 1204, 1857, 1891, 1904
AcoI YGGCCR 2 cut(s) 1498, 1707
AcsI RAATTY 5 cut(s) 21, 208, 809, 844, 889
AdeI CACNNNGTG 1 cut(s) 1616
AfaI GTAC 1 cut(s) 1956
AfiI CCNNNNNNNGG 6 cut(s) 403, 515, 1364, 1496, 1507, 1793
AhlI ACTAGT 1 cut(s) 1109
AjnI CCWGG 1 cut(s) 1950
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
Alw21I GWGCWC 3 cut(s) 552, 627, 1173
Alw26I GTCTC 3 cut(s) 1118, 1595, 1671
Alw44I GTGCAC 1 cut(s) 623
AlwI GGATC 7 cut(s) 56, 69, 1191, 1204, 1857, 1891, 1904
AoxI GGCC 4 cut(s) 142, 755, 1498, 1707
ApaLI GTGCAC 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 407, 1250, 1583
ApoI RAATTY 5 cut(s) 21, 208, 809, 844, 889
ArsI GACNNNNNNTTYG 2 cut(s) 1806, 1838
Asp700I GAANNNNTTC 2 cut(s) 1122, 1485
AspLEI GCGC 1 cut(s) 1472
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 1 cut(s) 1413
AsuHPI GGTGA 2 cut(s) 533, 1936
AsuII TTCGAA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 627
BalI TGGCCA 2 cut(s) 1500, 1709
BamHI GGATCC 3 cut(s) 61, 1196, 1896
BanII GRGCYC 2 cut(s) 552, 1173
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 466, 1181
Bbv12I GWGCWC 3 cut(s) 552, 627, 1173
BbvCI CCTCAGC 4 cut(s) 1245, 1579, 1682, 1770
BbvI GCAGC 3 cut(s) 419, 1237, 1570
BccI CCATC 6 cut(s) 214, 751, 869, 1410, 1810, 1887
BciT130I CCWGG 1 cut(s) 1952
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 1413
BcoDI GTCTC 3 cut(s) 1118, 1595, 1671
BcuI ACTAGT 1 cut(s) 1109
BfaI CTAG 2 cut(s) 146, 1110
BfmI CTRYAG 1 cut(s) 260
BisI GCNGC 3 cut(s) 408, 1251, 1584
BlsI GCNGC 3 cut(s) 409, 1252, 1585
Bme1390I CCNGG 2 cut(s) 1413, 1952
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 4 cut(s) 63, 1198, 1576, 1898
BmrFI CCNGG 2 cut(s) 1413, 1952
BmsI GCATC 2 cut(s) 220, 1848
BpiI GAAGAC 2 cut(s) 466, 1181
Bpu10I CCTNAGC 5 cut(s) 999, 1245, 1579, 1682, 1770
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 6 cut(s) 853, 971, 1157, 1238, 1466, 1499
BpuMI CCSGG 1 cut(s) 1413
BsaAI YACGTR 1 cut(s) 1652
BsaI GGTCTC 1 cut(s) 1671
BsaJI CCNNGG 3 cut(s) 176, 430, 752
BsaWI WCCGGW 1 cut(s) 1942
Bsc4I CCNNNNNNNGG 6 cut(s) 403, 515, 1364, 1496, 1507, 1793
Bse1I ACTGG 4 cut(s) 287, 758, 1325, 1643
Bse3DI GCAATG 1 cut(s) 725
BseBI CCWGG 1 cut(s) 1952
BseDI CCNNGG 3 cut(s) 176, 430, 752
BseGI GGATG 5 cut(s) 235, 391, 607, 1421, 1802
BseLI CCNNNNNNNGG 6 cut(s) 403, 515, 1364, 1496, 1507, 1793
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 8 cut(s) 45, 1008, 1236, 1443, 1593, 1687, 1696, 1784
BseNI ACTGG 4 cut(s) 287, 758, 1325, 1643
BseRI GAGGAG 1 cut(s) 1181
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 3 cut(s) 419, 1237, 1570
BseYI CCCAGC 1 cut(s) 1364
BsgI GTGCAG 1 cut(s) 1893
BshFI GGCC 4 cut(s) 144, 757, 1500, 1709
BsiHKAI GWGCWC 3 cut(s) 552, 627, 1173
BsiSI CCGG 4 cut(s) 1413, 1508, 1625, 1943
BslFI GGGAC 3 cut(s) 412, 724, 785
BslI CCNNNNNNNGG 6 cut(s) 403, 515, 1364, 1496, 1507, 1793
BsmAI GTCTC 3 cut(s) 1118, 1595, 1671
BsmBI CGTCTC 1 cut(s) 1595
BsmFI GGGAC 3 cut(s) 412, 724, 785
BsmI GAATGC 1 cut(s) 1306
BsnI GGCC 4 cut(s) 144, 757, 1500, 1709
Bso31I GGTCTC 1 cut(s) 1671
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 552, 627, 1173
Bsp143I GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
Bsp19I CCATGG 1 cut(s) 176
BspANI GGCC 4 cut(s) 144, 757, 1500, 1709
BspCNI CTCAG 8 cut(s) 44, 1009, 1237, 1442, 1592, 1686, 1695, 1783
BspHI TCATGA 2 cut(s) 556, 805
BspLI GGNNCC 4 cut(s) 63, 1198, 1576, 1898
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 7 cut(s) 56, 69, 1191, 1204, 1857, 1891, 1904
BspT104I TTCGAA 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 1671
BsrDI GCAATG 1 cut(s) 725
BsrI ACTGG 4 cut(s) 287, 758, 1325, 1643
BssECI CCNNGG 3 cut(s) 176, 430, 752
BssMI GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 176, 430
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 1952
Bst4CI ACNGT 3 cut(s) 465, 1070, 1397
BstBAI YACGTR 1 cut(s) 1652
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 648, 1242, 1442
BstDSI CCRYGG 1 cut(s) 176
BstF5I GGATG 5 cut(s) 235, 391, 607, 1421, 1802
BstHHI GCGC 1 cut(s) 1472
BstKTI GATC 7 cut(s) 64, 370, 526, 1199, 1852, 1890, 1899
BstMAI GTCTC 3 cut(s) 1118, 1595, 1671
BstMBI GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
BstMWI GCNNNNNNNGC 3 cut(s) 647, 1250, 1430
BstNI CCWGG 1 cut(s) 1952
BstNSI RCATGY 4 cut(s) 650, 1364, 1624, 1666
BstSCI CCNGG 2 cut(s) 1411, 1950
BstSFI CTRYAG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 3 cut(s) 419, 1237, 1570
BstV2I GAAGAC 2 cut(s) 466, 1181
BstX2I RGATCY 3 cut(s) 61, 1196, 1896
BstYI RGATCY 3 cut(s) 61, 1196, 1896
BsuRI GGCC 4 cut(s) 144, 757, 1500, 1709
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 5 cut(s) 235, 391, 607, 1421, 1802
Cac8I GCNNGC 3 cut(s) 648, 1242, 1442
CciI TCATGA 2 cut(s) 556, 805
CfoI GCGC 1 cut(s) 1472
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 2 cut(s) 639, 1612
CsiI ACCWGGT 1 cut(s) 1950
Csp6I GTAC 1 cut(s) 1955
CviQI GTAC 1 cut(s) 1955
DpnI GATC 7 cut(s) 63, 369, 525, 1198, 1851, 1889, 1898
DpnII GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
DraI TTTAAA 1 cut(s) 1135
DraIII CACNNNGTG 1 cut(s) 1616
EaeI YGGCCR 2 cut(s) 1498, 1707
Ecl136II GAGCTC 2 cut(s) 550, 1171
Eco130I CCWWGG 2 cut(s) 176, 430
Eco24I GRGCYC 2 cut(s) 552, 1173
Eco31I GGTCTC 1 cut(s) 1671
Eco32I GATATC 1 cut(s) 1157
Eco47I GGWCC 1 cut(s) 394
Eco53kI GAGCTC 2 cut(s) 550, 1171
EcoICRI GAGCTC 2 cut(s) 550, 1171
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 1950
EcoRV GATATC 1 cut(s) 1157
EcoT14I CCWWGG 2 cut(s) 176, 430
EcoT22I ATGCAT 2 cut(s) 546, 1132
EcoT38I GRGCYC 2 cut(s) 552, 1173
ErhI CCWWGG 2 cut(s) 176, 430
Esp3I CGTCTC 1 cut(s) 1595
FalI AAGNNNNNCTT 4 cut(s) 1259, 1291, 1326, 1358
FaqI GGGAC 3 cut(s) 412, 724, 785
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 408, 1251, 1584
FokI GGATG 5 cut(s) 242, 398, 614, 1428, 1789
FriOI GRGCYC 2 cut(s) 552, 1173
Fsp4HI GCNGC 3 cut(s) 408, 1251, 1584
FspBI CTAG 2 cut(s) 146, 1110
FspI TGCGCA 1 cut(s) 1471
GlaI GCGC 1 cut(s) 1471
GluI GCNGC 3 cut(s) 408, 1251, 1584
GsaI CCCAGC 1 cut(s) 1368
HaeIII GGCC 4 cut(s) 144, 757, 1500, 1709
HapII CCGG 4 cut(s) 1413, 1508, 1625, 1943
HgaI GACGC 2 cut(s) 639, 1612
HhaI GCGC 1 cut(s) 1472
Hin6I GCGC 1 cut(s) 1470
HinP1I GCGC 1 cut(s) 1470
HincII GTYRAC 2 cut(s) 1073, 1107
HindII GTYRAC 2 cut(s) 1073, 1107
HindIII AAGCTT 3 cut(s) 829, 1001, 1442
HinfI GANTC 7 cut(s) 109, 850, 878, 1213, 1232, 1691, 1927
HpaI GTTAAC 1 cut(s) 1107
HpaII CCGG 4 cut(s) 1413, 1508, 1625, 1943
HphI GGTGA 2 cut(s) 533, 1936
Hpy166II GTNNAC 4 cut(s) 625, 1073, 1107, 1481
Hpy188I TCNGA 5 cut(s) 753, 1161, 1310, 1676, 1892
Hpy8I GTNNAC 4 cut(s) 625, 1073, 1107, 1481
HpyCH4III ACNGT 3 cut(s) 465, 1070, 1397
HpyCH4IV ACGT 1 cut(s) 1651
HpyF10VI GCNNNNNNNGC 3 cut(s) 647, 1250, 1430
HpySE526I ACGT 1 cut(s) 1651
HspAI GCGC 1 cut(s) 1470
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 1107
Kzo9I GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
LmnI GCTCC 2 cut(s) 1168, 1288
Lsp1109I GCAGC 3 cut(s) 419, 1237, 1570
LweI GCATC 2 cut(s) 220, 1848
MabI ACCWGGT 1 cut(s) 1950
MaeI CTAG 2 cut(s) 146, 1110
MaeII ACGT 1 cut(s) 1651
MaeIII GTNAC 8 cut(s) 71, 905, 1257, 1377, 1391, 1616, 1634, 1652
MalI GATC 7 cut(s) 63, 369, 525, 1198, 1851, 1889, 1898
MboI GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
MboII GAAGA 6 cut(s) 169, 461, 471, 893, 998, 1181
MflI RGATCY 3 cut(s) 61, 1196, 1896
MhlI GDGCHC 3 cut(s) 552, 627, 1173
MlsI TGGCCA 2 cut(s) 1500, 1709
MluNI TGGCCA 2 cut(s) 1500, 1709
MlyI GAGTC 1 cut(s) 859
MmeI TCCRAC 3 cut(s) 421, 436, 1266
Mox20I TGGCCA 2 cut(s) 1500, 1709
Mph1103I ATGCAT 2 cut(s) 546, 1132
MroXI GAANNNNTTC 2 cut(s) 1122, 1485
MscI TGGCCA 2 cut(s) 1500, 1709
MseI TTAA 7 cut(s) 114, 239, 1025, 1038, 1106, 1134, 1353
MslI CAYNNNNRTG 1 cut(s) 1744
Msp20I TGGCCA 2 cut(s) 1500, 1709
MspA1I CMGCKG 1 cut(s) 1583
MspI CCGG 4 cut(s) 1413, 1508, 1625, 1943
MspR9I CCNGG 2 cut(s) 1413, 1952
Mva1269I GAATGC 1 cut(s) 1306
MvaI CCWGG 1 cut(s) 1952
MwoI GCNNNNNNNGC 3 cut(s) 647, 1250, 1430
NciI CCSGG 1 cut(s) 1413
NcoI CCATGG 1 cut(s) 176
NdeII GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
NlaIV GGNNCC 4 cut(s) 63, 1198, 1576, 1898
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 3 cut(s) 71, 1616, 1652
NsbI TGCGCA 1 cut(s) 1471
NsiI ATGCAT 2 cut(s) 546, 1132
NspI RCATGY 4 cut(s) 650, 1364, 1624, 1666
NspV TTCGAA 1 cut(s) 155
PaeI GCATGC 1 cut(s) 650
PagI TCATGA 2 cut(s) 556, 805
PctI GAATGC 1 cut(s) 1306
PdmI GAANNNNTTC 2 cut(s) 1122, 1485
PfeI GAWTC 6 cut(s) 109, 878, 1213, 1232, 1691, 1927
PflFI GACNNNGTC 1 cut(s) 1068
PflMI CCANNNNNTGG 2 cut(s) 515, 1364
PfoI TCCNGGA 1 cut(s) 1411
PkrI GCNGC 3 cut(s) 409, 1252, 1585
PleI GAGTC 1 cut(s) 858
PpsI GAGTC 1 cut(s) 858
Ppu21I YACGTR 1 cut(s) 1652
Psp124BI GAGCTC 2 cut(s) 552, 1173
Psp6I CCWGG 1 cut(s) 1950
PspFI CCCAGC 1 cut(s) 1364
PspGI CCWGG 1 cut(s) 1950
PspN4I GGNNCC 4 cut(s) 63, 1198, 1576, 1898
PspPI GGNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 3 cut(s) 61, 1196, 1896
PsyI GACNNNGTC 1 cut(s) 1068
PvuII CAGCTG 1 cut(s) 1583
RsaI GTAC 1 cut(s) 1956
RsaNI GTAC 1 cut(s) 1955
RseI CAYNNNNRTG 1 cut(s) 1744
SacI GAGCTC 2 cut(s) 552, 1173
SaqAI TTAA 7 cut(s) 114, 239, 1025, 1038, 1106, 1134, 1353
SatI GCNGC 3 cut(s) 408, 1251, 1584
Sau3AI GATC 7 cut(s) 61, 367, 523, 1196, 1849, 1887, 1896
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 859
ScrFI CCNGG 2 cut(s) 1413, 1952
SduI GDGCHC 3 cut(s) 552, 627, 1173
SexAI ACCWGGT 1 cut(s) 1950
SfaNI GCATC 2 cut(s) 220, 1848
SfcI CTRYAG 1 cut(s) 260
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 1744
SmlI CTYRAG 6 cut(s) 832, 986, 1172, 1217, 1445, 1514
SmoI CTYRAG 6 cut(s) 832, 986, 1172, 1217, 1445, 1514
SpeI ACTAGT 1 cut(s) 1109
SphI GCATGC 1 cut(s) 650
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 146, 1110
SstI GAGCTC 2 cut(s) 552, 1173
StyD4I CCNGG 2 cut(s) 1411, 1950
StyI CCWWGG 2 cut(s) 176, 430
TaaI ACNGT 3 cut(s) 465, 1070, 1397
TaiI ACGT 1 cut(s) 1654
TaqI TCGA 4 cut(s) 13, 155, 485, 1116
TfiI GAWTC 6 cut(s) 109, 878, 1213, 1232, 1691, 1927
Tru1I TTAA 7 cut(s) 114, 239, 1025, 1038, 1106, 1134, 1353
Tru9I TTAA 7 cut(s) 114, 239, 1025, 1038, 1106, 1134, 1353
TseFI GTSAC 3 cut(s) 71, 1616, 1652
TseI GCWGC 3 cut(s) 407, 1250, 1583
Tsp45I GTSAC 3 cut(s) 71, 1616, 1652
TspDTI ATGAA 6 cut(s) 545, 822, 998, 1115, 1710, 1715
Tth111I GACNNNGTC 1 cut(s) 1068
Van91I CCANNNNNTGG 2 cut(s) 515, 1364
VneI GTGCAC 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 5 cut(s) 21, 208, 809, 844, 889
XceI RCATGY 4 cut(s) 650, 1364, 1624, 1666
XmnI GAANNNNTTC 2 cut(s) 1122, 1485
XspI CTAG 2 cut(s) 146, 1110
Zsp2I ATGCAT 2 cut(s) 546, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.