Rmu_co8059592.1_g000001

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8059592.1
Physical Location & Seq
Reverse (-)
2 .. 463
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8059592.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atgttcactggggtcgacgacaatctcagaaagttgaagagaacgctgatgaagattcaagctcgtgttgatgatatagaaaagaaacattgcatcacggaggcagcagaagatttactggaagatctgctgactagttttttggatgctgaagatttgctggacaagatcggtttgggactggaaaggatgacttgtttggatgtggaggtcaacagttggagtcaggtacatcacttgatccccttctattctggcataccgtctgagattaaaaagatgcaagtgaaattggatgagttagtaacagaactagaaagctaccctaccacggaagtcatccggttgagaaagcctatggaaaaggctattgctccttgtacttctttggttgatgaatcttgtgtatttggaagggaaacagataagaacaagatgaaaaaaatggtcttgtctctgcaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.64

Weight (kDa)

5.16

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AclWI GGATC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 231, 382
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 37, 59
AhlI ACTAGT 1 cut(s) 134
AluBI AGCT 2 cut(s) 62, 321
AluI AGCT 2 cut(s) 62, 321
AlwI GGATC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 104
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
BauI CACGAG 1 cut(s) 63
BbvI GCAGC 1 cut(s) 116
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 314
BglII AGATCT 1 cut(s) 124
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 3 cut(s) 102, 136, 270
BmuI ACTGGG 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 3 cut(s) 13, 123, 186
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 5 cut(s) 151, 195, 208, 301, 339
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 40, 258
BseNI ACTGG 3 cut(s) 13, 123, 186
BseXI GCAGC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 124, 168, 240
BspCNI CTCAG 2 cut(s) 39, 259
BspPI GGATC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 3 cut(s) 13, 123, 186
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 3 cut(s) 124, 168, 240
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 218, 264
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 26, 267
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 5 cut(s) 151, 195, 208, 301, 339
BstKTI GATC 3 cut(s) 127, 171, 243
BstMBI GATC 3 cut(s) 124, 168, 240
BstV1I GCAGC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 5 cut(s) 151, 195, 208, 301, 339
BtsIMutI CAGTG 1 cut(s) 6
Csp6I GTAC 2 cut(s) 230, 381
CviJI RGCY 4 cut(s) 62, 321, 355, 368
CviKI_1 RGCY 4 cut(s) 62, 321, 355, 368
CviQI GTAC 2 cut(s) 230, 381
DdeI CTNAG 2 cut(s) 26, 267
DpnI GATC 3 cut(s) 126, 170, 242
DpnII GATC 3 cut(s) 124, 168, 240
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 171
FaiI YATR 3 cut(s) 77, 260, 359
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FaqI GGGAC 1 cut(s) 192
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 5 cut(s) 158, 202, 215, 308, 326
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 135, 314
GluI GCNGC 1 cut(s) 105
HapII CCGG 1 cut(s) 343
HincII GTYRAC 2 cut(s) 16, 214
HindII GTYRAC 2 cut(s) 16, 214
HinfI GANTC 3 cut(s) 55, 223, 398
HpaII CCGG 1 cut(s) 343
Hpy166II GTNNAC 3 cut(s) 6, 16, 214
Hpy188I TCNGA 2 cut(s) 29, 268
Hpy8I GTNNAC 3 cut(s) 6, 16, 214
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 256, 408
HpyCH4III ACNGT 2 cut(s) 218, 264
HpyCH4V TGCA 3 cut(s) 93, 283, 460
HpyF3I CTNAG 2 cut(s) 26, 267
Kzo9I GATC 3 cut(s) 124, 168, 240
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 6 cut(s) 104, 146, 167, 212, 240, 356
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 3 cut(s) 102, 136, 270
MaeI CTAG 2 cut(s) 135, 314
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 126, 170, 242
MboI GATC 3 cut(s) 124, 168, 240
MboII GAAGA 5 cut(s) 49, 64, 122, 134, 164
MflI RGATCY 1 cut(s) 124
MluCI AATT 1 cut(s) 290
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 2 cut(s) 94, 202
MseI TTAA 1 cut(s) 273
MspI CCGG 1 cut(s) 343
NdeII GATC 3 cut(s) 124, 168, 240
PfeI GAWTC 2 cut(s) 55, 398
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 231, 382
RsaNI GTAC 2 cut(s) 230, 381
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 124, 168, 240
SchI GAGTC 1 cut(s) 232
SetI ASST 4 cut(s) 64, 213, 231, 323
SfaNI GCATC 3 cut(s) 102, 136, 270
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 1 cut(s) 290
SspMI CTAG 2 cut(s) 135, 314
TaaI ACNGT 2 cut(s) 218, 264
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 2 cut(s) 55, 398
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 65, 411, 452
TspGWI ACGGA 2 cut(s) 113, 347
TspRI CASTG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 135, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.