Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Reverse (-)

54942696 .. 54943740

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG324800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCAGATATAGCATCCCTGGTACTCTCGACCGGCATTACGTCGGCAATTCTTCACGTTGTTGTTGACAGAGTCGCAAAATTTGTTGAACTACAGAAAGACATGTTCACTGGGGTTGACGACAATCTCAGAAAGCTGAAGAGGACATTGATGAAGATTCAAGCTCGTGTTGATGATATAGAACAGAAACTGTGCATCACGGAGGCAGCAGAAGATTTGCTCGAAGATCTCAAGACTAAGTTTTTGGATGCTGAAGATTTGCTGGACAAGATTGGTTTAGGACTGGAGACGATGATTTGTGTGGGTGTGGAGGTCAACAGTTGGAGTCTGGGGAGCAGGATTGTGATGACTACTCGAAGTGAAATTTCTGCCTCAATTGATGACTTTACATCTTATCGTTTGGATCCTCTGTGTGACAAAGCTTGCTGGAAAATAATCAAAGGGCAACAAAAAAGAGGGAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

5.26

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	18 - 91	7.6e-10	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	398, 411
AcsI	RAATTY	2 cut(s)	80, 363
AcuI	CTGAAG	2 cut(s)	158, 273
AfaI	GTAC	1 cut(s)	24
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	89, 161
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	3 cut(s)	136, 164, 422
AluI	AGCT	3 cut(s)	136, 164, 422
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	398, 411
AlwNI	CAGNNNCTG	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	2 cut(s)	80, 363
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
BamHI	GGATCC	1 cut(s)	403
BauI	CACGAG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	92
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	23, 204, 238
BmuI	ACTGGG	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	115, 288
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	14, 253
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	115, 288
BseXI	GCAGC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	281
BsmBI	CGTCTC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	226, 403
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	2 cut(s)	398, 411
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	115, 288
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	226, 403
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	192, 320
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	128, 237
BstF5I	GGATG	2 cut(s)	14, 253
BstKTI	GATC	2 cut(s)	229, 406
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	226, 403
BstMCI	CGRYCG	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	226, 403
BstYI	RGATCY	2 cut(s)	226, 403
BtsCI	GGATG	2 cut(s)	14, 253
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	3 cut(s)	136, 164, 422
CviKI_1	RGCY	3 cut(s)	136, 164, 422
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	128, 237
DpnI	GATC	2 cut(s)	228, 405
DpnII	GATC	2 cut(s)	226, 403
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	158, 273
EcoRII	CCWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	11, 104, 179
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	305
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	3 cut(s)	67, 118, 316
HindII	GTYRAC	3 cut(s)	67, 118, 316
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	3 cut(s)	72, 157, 325
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	4 cut(s)	67, 108, 118, 316
Hpy188I	TCNGA	2 cut(s)	7, 131
Hpy188III	TCNNGA	2 cut(s)	28, 232
Hpy8I	GTNNAC	4 cut(s)	67, 108, 118, 316
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	192, 320
HpyCH4IV	ACGT	2 cut(s)	41, 57
HpyCH4V	TGCA	1 cut(s)	195
HpyF3I	CTNAG	2 cut(s)	128, 237
HpySE526I	ACGT	2 cut(s)	41, 57
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	226, 403
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	9 cut(s)	5, 32, 46, 96, 248, 269, 314, 322, 412
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	3 cut(s)	23, 204, 238
MaeII	ACGT	2 cut(s)	41, 57
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	228, 405
MboI	GATC	2 cut(s)	226, 403
MboII	GAAGA	6 cut(s)	44, 151, 166, 224, 236, 266
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	226, 403
MluCI	AATT	4 cut(s)	48, 80, 363, 375
MlyI	GAGTC	2 cut(s)	81, 334
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	6 cut(s)	135, 196, 304, 382, 417, 449
MseI	TTAA	1 cut(s)	466
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	2 cut(s)	226, 403
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	80, 333
PpsI	GAGTC	2 cut(s)	80, 333
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	226, 403
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	466
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	226, 403
SchI	GAGTC	2 cut(s)	81, 334
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	6 cut(s)	44, 60, 138, 166, 315, 424
SfaNI	GCATC	3 cut(s)	23, 204, 238
SfcI	CTRYAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	48, 80, 363, 375
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	192, 320
TaiI	ACGT	2 cut(s)	44, 60
TaqI	TCGA	3 cut(s)	29, 222, 355
TasI	AATT	4 cut(s)	48, 80, 363, 375
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	71
XapI	RAATTY	2 cut(s)	80, 363
XceI	RCATGY	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.