Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Reverse (-)

65190654 .. 65193235

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0474500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAAATAAGGATCAATACCAACAATCCCCAGAACCAAAATACGAGTGCCTTCTATTTGATATAGATGACACCCTCTATCCCCTGAGCTCCGGCATTTCAGTACAAATCACCAAGAATATTCAAGAATATATGCTTCATAAGCTTGGGATGGAAGAAAGTACAGTTCCTGAATTGTGTCTTTCGTTGTACAAGGATTATGGGACGACAATGGCTGGTCTTAAGGATAAAGGCTATAACTTTGAGTATGATGACTTCCACAGTTTTGTTCATGGGAGGTTGCCCTACGATTTGCTTAAGCCTGACCATGTTCTGAGGGGTCTTTTACTTAGTCTGCCTGTTCGGAAAGTAATCTTTACGAATTCAGATAAGAATCATGCCGCTACAGTGCTCAAAAGGCTTGGAATAGAGGACTGTTTTGAGTCAATCATTTGCTTTGAGACTCTGAATCCCACCAACAGTGCTGATGATTCTGCTGGTGCAGAAGAAACTGAATTTGTGCAACAACCAAATACCAATGCTGTAATTCCAAGGAGCCCAGTTGTCTGCAAACCATTTGAAAATGCCTTTGAAGAAGCTTTTAAGATAGCAAACATCAACCCTCAAAGAACGTTATTCTTTGACGATAGCATTCGTAATTTGCAAACTGCAAAACAAGTGGGTCTGCAAACAGTATGGGTTGGCGCCTCCCACCGAACCAAAGATGTGGATCATGCACTGGAGAGCATCCACAATATGAGGGAGGCATTGCCAGAACTCTGGGCTGAGCAGTCTGAGAATGTTAGATATTCGAGAGAGGTTGCAATTGAGACACCAGTAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

275

Amino Acids

31.29

Weight (kDa)

4.85

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	16 - 221	2.4e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	683
AciI	CCGC	1 cut(s)	381
AclI	AACGTT	1 cut(s)	611
AclWI	GGATC	2 cut(s)	21, 717
AcsI	RAATTY	2 cut(s)	361, 494
AcyI	GRCGYC	1 cut(s)	684
AfaI	GTAC	3 cut(s)	105, 163, 191
AflII	CTTAAG	2 cut(s)	221, 296
AgsI	TTSAA	3 cut(s)	125, 560, 572
AluBI	AGCT	4 cut(s)	90, 145, 578, 824
AluI	AGCT	4 cut(s)	90, 145, 578, 824
Alw21I	GWGCWC	2 cut(s)	92, 393
Alw26I	GTCTC	2 cut(s)	434, 803
AlwI	GGATC	2 cut(s)	21, 717
AlwNI	CAGNNNCTG	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	361, 494
AspLEI	GCGC	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	92, 539
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
Bbv12I	GWGCWC	2 cut(s)	92, 393
BccI	CCATC	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	434, 803
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	687
BfrI	CTTAAG	2 cut(s)	221, 296
BisI	GCNGC	1 cut(s)	381
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	536, 685
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	1 cut(s)	735
BmuI	ACTGGG	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	765
BsaBI	GATNNNNATC	2 cut(s)	372, 708
BsaHI	GRCGYC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	530
Bse1I	ACTGG	3 cut(s)	539, 723, 815
Bse3DI	GCAATG	1 cut(s)	746
Bse8I	GATNNNNATC	2 cut(s)	372, 708
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	156, 726
BseJI	GATNNNNATC	2 cut(s)	372, 708
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	4 cut(s)	77, 305, 756, 765
BseNI	ACTGG	3 cut(s)	539, 723, 815
BsgI	GTGCAG	1 cut(s)	501
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	2 cut(s)	92, 393
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	434, 803
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	630
Bsp1286I	GDGCHC	3 cut(s)	92, 393, 539
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	13, 709
Bsp1720I	GCTNAGC	1 cut(s)	765
BspACI	CCGC	1 cut(s)	381
BspCNI	CTCAG	4 cut(s)	78, 306, 757, 766
BspLI	GGNNCC	2 cut(s)	536, 685
BspPI	GGATC	2 cut(s)	21, 717
BspT107I	GGYRCC	1 cut(s)	683
BspTI	CTTAAG	2 cut(s)	221, 296
BsrDI	GCAATG	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	539, 723, 815
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	2 cut(s)	13, 709
BssNI	GRCGYC	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	530
Bst4CI	ACNGT	6 cut(s)	166, 263, 388, 416, 461, 673
BstACI	GRCGYC	1 cut(s)	684
BstAFI	CTTAAG	2 cut(s)	221, 296
BstAUI	TGTACA	1 cut(s)	189
BstDEI	CTNAG	6 cut(s)	86, 314, 329, 765, 774, 825
BstF5I	GGATG	2 cut(s)	156, 726
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	2 cut(s)	16, 712
BstMAI	GTCTC	2 cut(s)	434, 803
BstMBI	GATC	2 cut(s)	13, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 397
BstSFI	CTRYAG	1 cut(s)	384
BstXI	CCANNNNNNTGG	2 cut(s)	706, 759
BtsCI	GGATG	2 cut(s)	156, 726
BtsIMutI	CAGTG	3 cut(s)	393, 466, 716
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	104, 162, 190
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CviAII	CATG	4 cut(s)	272, 308, 377, 713
CviQI	GTAC	3 cut(s)	104, 162, 190
DdeI	CTNAG	6 cut(s)	86, 314, 329, 765, 774, 825
DinI	GGCGCC	1 cut(s)	685
DpnI	GATC	2 cut(s)	15, 711
DpnII	GATC	2 cut(s)	13, 709
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	530
Eco24I	GRGCYC	2 cut(s)	92, 539
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	2 cut(s)	92, 539
EgeI	GGCGCC	1 cut(s)	685
EheI	GGCGCC	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	4 cut(s)	275, 311, 380, 716
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	271, 307, 376, 712
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	163, 713
FriOI	GRGCYC	2 cut(s)	92, 539
Fsp4HI	GCNGC	1 cut(s)	381
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	740
HaeII	RGCGCY	1 cut(s)	687
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	684
Hin1II	CATG	4 cut(s)	275, 311, 380, 716
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	3 cut(s)	143, 576, 822
HinfI	GANTC	5 cut(s)	373, 422, 442, 448, 470
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	5 cut(s)	315, 345, 367, 447, 775
Hpy188III	TCNNGA	3 cut(s)	125, 170, 792
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	6 cut(s)	166, 263, 388, 416, 461, 673
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	8 cut(s)	482, 502, 549, 643, 650, 667, 716, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 397
HpyF3I	CTNAG	6 cut(s)	86, 314, 329, 765, 774, 825
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	1 cut(s)	684
Hsp92II	CATG	4 cut(s)	275, 311, 380, 716
HspAI	GCGC	1 cut(s)	684
KasI	GGCGCC	1 cut(s)	683
Kzo9I	GATC	2 cut(s)	13, 709
LmnI	GCTCC	2 cut(s)	95, 534
LweI	GCATC	1 cut(s)	735
MaeII	ACGT	1 cut(s)	611
MalI	GATC	2 cut(s)	15, 711
MboI	GATC	2 cut(s)	13, 709
MboII	GAAGA	3 cut(s)	167, 497, 584
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	3 cut(s)	92, 393, 539
MluCI	AATT	6 cut(s)	173, 361, 494, 525, 637, 804
Mly113I	GGCGCC	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	431, 436
MnlI	CCTC	9 cut(s)	86, 270, 309, 403, 612, 697, 732, 736, 790
MseI	TTAA	3 cut(s)	222, 297, 582
MspCI	CTTAAG	2 cut(s)	221, 296
MspI	CCGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	142, 397
NarI	GGCGCC	1 cut(s)	684
NdeII	GATC	2 cut(s)	13, 709
NlaIII	CATG	4 cut(s)	275, 311, 380, 716
NlaIV	GGNNCC	2 cut(s)	536, 685
PctI	GAATGC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	373, 448, 470
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	430, 436
PluTI	GGCGCC	1 cut(s)	687
PpsI	GAGTC	2 cut(s)	430, 436
Psp124BI	GAGCTC	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	536, 685
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	105, 163, 191
RsaNI	GTAC	3 cut(s)	104, 162, 190
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	222, 297, 582
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	2 cut(s)	13, 709
SchI	GAGTC	2 cut(s)	431, 436
SduI	GDGCHC	3 cut(s)	92, 393, 539
SetI	ASST	7 cut(s)	92, 147, 281, 580, 614, 801, 826
SfaNI	GCATC	1 cut(s)	735
SfcI	CTRYAG	1 cut(s)	384
SfoI	GGCGCC	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	221, 296
SmoI	CTYRAG	2 cut(s)	221, 296
Sse9I	AATT	6 cut(s)	173, 361, 494, 525, 637, 804
SsiI	CCGC	1 cut(s)	381
SspDI	GGCGCC	1 cut(s)	683
SspI	AATATT	1 cut(s)	121
SstI	GAGCTC	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	6 cut(s)	166, 263, 388, 416, 461, 673
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	791
TasI	AATT	6 cut(s)	173, 361, 494, 525, 637, 804
TatI	WGTACW	3 cut(s)	103, 161, 189
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	373, 448, 470
Tru1I	TTAA	3 cut(s)	222, 297, 582
Tru9I	TTAA	3 cut(s)	222, 297, 582
TscAI	CASTG	3 cut(s)	393, 466, 723
TspDTI	ATGAA	2 cut(s)	128, 260
TspRI	CASTG	3 cut(s)	393, 466, 723
Vha464I	CTTAAG	2 cut(s)	221, 296
XapI	RAATTY	2 cut(s)	361, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.