Rh7CG465500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001339
Physical Location & Seq
Reverse (-)
62196502 .. 62197800
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG465500.1

Sequence Viewer

Length: 1299 bp
ATGGCGACGAGTATAGCGTCTCTAGTACTTTCGACCGGCATCACTTCGGCGGTTCTTCAGGTTCTTCTCGACAGAATTGCCAATTTCACTCAAACAAAGATAACCCAGTTTACCCAGCTGCACGTCGAGTTCTTGAAGTTGGGAGCAACAATGTCCAAGGCTAAAGCTCTTGTGGATGATGTAGAGAACAAAAAATGCTTTCCAGAGGCTTGCCGAATTTTGCTCGAAGATGTCAAAAGCGTTGTTTTAGATGCCGATGATTTGCTGGATGAGATTGACATGGACCTCGAAAAGAGGAATTCTACTGACTTCAATAAGAATCAGGTTAGTCAAATGTTCCTATCATCTCGTAGATTCAATATTCCTTCTGAGCTGAGCAAGGTCCATAAAGAACTGGGTGGTTTAGTAGAGAAACTGGAGAGCTACTGTATGATCAATTCGGGTCAACCTCAAATGGCTGCTCCTGTTATTCCCAGTACTTCTTTAGTAGATGAATCGTCTATAATTGCAAGAGGTTCAGACAAGGAAAAGATCATTCAGATGGTCTTGTCTGAGCAAGGAGAGCGTGGAGGAAATGTTTCTGTGATTCCAATAGTGGGAATGGGCGGAATTGGGAAAACAGCACTTGCTCAACTTGTTTACAATGATCCAGATGTGGTTAAAAATTTTGATTTTAAAATCTGGGTATCTGTTTCTTTGAGCTATGATGTTGTCAAGATTACAAAATCCATTTTTAACTCCCTTACTGAGCAAGTGTCTGGGTTGTCTGTACTCAAGGGAGCTTTTGAGTTATCTGATCTAAGCAAATATTTTGAGTTGAGTCTTAATGAGATTCATATTCAGTTACGAGAGAAGTTAAGGGGGAAGAAGTTTTTGCTTGTACTTGACGATATGTGGAATGAGAATCCTAGAGATTGGGATGTATTGAAATTGCCTTTTCAAGTTGCAGCACAAGGAAGCAAGATTGTGATTACTACCCGAAGCGAAATTGCTTCGTCTATTCTTTCTGGTGCTCCTGCTTATCATTTGGATACTTTGTCTCATAATGATTGCTGGACAATCATTAAACAGACGGCAGGACTAGGTGATGCAAATGAAAATGAGTGGATTGGGTTAAGGATAGCTAAGAAGTGCAAAGGGCTTCCTTTGGCGGCGAAAGTGATTGGAAGTGTCTTACGTTATAAATCTGGAGTGAGGAAGTGGGATGCTTTGTTAAAATGTGAGCTTTGGGAATCTCCAGAACATGGAAACCATATCTATCCAGCACTTAAGTTGAGCTATGATTGTCTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

432

Amino Acids

47.89

Weight (kDa)

6.05

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 18 - 106 2.3e-10 Rx N-terminal domain
NB-ARC PF00931 175 - 360 1.1e-31 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1182
AccB7I CCANNNNNTGG 1 cut(s) 1244
AciI CCGC 3 cut(s) 50, 606, 1151
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 3 cut(s) 216, 298, 664
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 4 cut(s) 27, 478, 771, 882
AfiI CCNNNNNNNGG 2 cut(s) 596, 1244
AflII CTTAAG 1 cut(s) 1268
AgsI TTSAA 5 cut(s) 136, 313, 358, 928, 941
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 9 cut(s) 118, 167, 373, 423, 702, 782, 1124, 1225, 1278
AluI AGCT 9 cut(s) 118, 167, 373, 423, 702, 782, 1124, 1225, 1278
Alw21I GWGCWC 1 cut(s) 1015
Alw26I GTCTC 2 cut(s) 24, 1044
AlwI GGATC 1 cut(s) 641
ApeKI GCWGC 3 cut(s) 118, 458, 947
ApoI RAATTY 3 cut(s) 216, 298, 664
Asp700I GAANNNNTTC 1 cut(s) 577
AspS9I GGNCC 2 cut(s) 283, 382
AsuHPI GGTGA 1 cut(s) 1097
AvaII GGWCC 2 cut(s) 283, 382
BbsI GAAGAC 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 1015
BbvI GCAGC 3 cut(s) 105, 445, 959
BccI CCATC 1 cut(s) 535
BceAI ACGGC 1 cut(s) 1089
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciVI GTATCC 1 cut(s) 1024
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 24, 1044
BfaI CTAG 3 cut(s) 23, 909, 1082
BfrI CTTAAG 1 cut(s) 1268
BfuI GTATCC 1 cut(s) 1024
BisI GCNGC 4 cut(s) 119, 459, 948, 1152
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 4 cut(s) 120, 460, 949, 1153
BmcAI AGTACT 2 cut(s) 27, 478
Bme18I GGWCC 2 cut(s) 283, 382
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 283, 382
BmrI ACTGGG 3 cut(s) 100, 404, 468
BmsI GCATC 4 cut(s) 48, 241, 1078, 1195
BmuI ACTGGG 3 cut(s) 100, 404, 468
BpiI GAAGAC 1 cut(s) 1280
BpmI CTGGAG 3 cut(s) 437, 1209, 1221
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 1244
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 4 cut(s) 106, 399, 420, 474
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 4 cut(s) 181, 274, 925, 1210
BseLI CCNNNNNNNGG 2 cut(s) 596, 1244
BseMII CTCAG 4 cut(s) 360, 365, 543, 738
BseNI ACTGG 4 cut(s) 106, 399, 420, 474
BseXI GCAGC 3 cut(s) 105, 445, 959
BseYI CCCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 1015
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 596, 1244
BsmAI GTCTC 2 cut(s) 24, 1044
BsmBI CGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 1015
Bsp143I GATC 4 cut(s) 432, 531, 646, 796
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 3 cut(s) 50, 606, 1151
BspCNI CTCAG 4 cut(s) 361, 366, 544, 739
BspPI GGATC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 1268
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 4 cut(s) 106, 399, 420, 474
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 4 cut(s) 432, 531, 646, 796
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 428
BstAFI CTTAAG 1 cut(s) 1268
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 6 cut(s) 369, 374, 552, 747, 800, 1125
BstF5I GGATG 4 cut(s) 181, 274, 925, 1210
BstKTI GATC 4 cut(s) 435, 534, 649, 799
BstMAI GTCTC 2 cut(s) 24, 1044
BstMBI GATC 4 cut(s) 432, 531, 646, 796
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstV1I GCAGC 3 cut(s) 105, 445, 959
BstV2I GAAGAC 1 cut(s) 1280
BsuI GTATCC 1 cut(s) 1024
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 4 cut(s) 181, 274, 925, 1210
Cac8I GCNNGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 283, 382
CseI GACGC 1 cut(s) 6
Csp6I GTAC 4 cut(s) 26, 477, 770, 881
CviAII CATG 2 cut(s) 280, 1244
CviQI GTAC 4 cut(s) 26, 477, 770, 881
DdeI CTNAG 6 cut(s) 369, 374, 552, 747, 800, 1125
DpnI GATC 4 cut(s) 434, 533, 648, 798
DpnII GATC 4 cut(s) 432, 531, 646, 796
DraI TTTAAA 1 cut(s) 676
EciI GGCGGA 1 cut(s) 621
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 283, 382
Eco57I CTGAAG 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 2 cut(s) 283, 1247
FatI CATG 2 cut(s) 279, 1243
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 119, 459, 948, 1152
FokI GGATG 4 cut(s) 188, 281, 932, 1217
Fsp4HI GCNGC 4 cut(s) 119, 459, 948, 1152
FspBI CTAG 3 cut(s) 23, 909, 1082
GluI GCNGC 4 cut(s) 119, 459, 948, 1152
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 3 cut(s) 437, 1209, 1221
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 283, 1247
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HinfI GANTC 8 cut(s) 319, 354, 494, 586, 820, 832, 904, 1232
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 1097
Hpy166II GTNNAC 3 cut(s) 111, 446, 640
Hpy188I TCNGA 5 cut(s) 370, 520, 540, 553, 796
Hpy188III TCNNGA 7 cut(s) 68, 133, 203, 650, 715, 1188, 1238
Hpy8I GTNNAC 3 cut(s) 111, 446, 640
Hpy99I CGWCG 2 cut(s) 10, 128
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 2 cut(s) 123, 1177
HpyCH4V TGCA 5 cut(s) 121, 509, 947, 1091, 1134
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 6 cut(s) 369, 374, 552, 747, 800, 1125
HpySE526I ACGT 2 cut(s) 123, 1177
Hsp92II CATG 2 cut(s) 283, 1247
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 4 cut(s) 432, 531, 646, 796
LmnI GCTCC 4 cut(s) 143, 466, 779, 1018
Lsp1109I GCAGC 3 cut(s) 105, 445, 959
LweI GCATC 4 cut(s) 48, 241, 1078, 1195
MaeI CTAG 3 cut(s) 23, 909, 1082
MaeII ACGT 2 cut(s) 123, 1177
MaeIII GTNAC 1 cut(s) 843
MalI GATC 4 cut(s) 434, 533, 648, 798
MboI GATC 4 cut(s) 432, 531, 646, 796
MboII GAAGA 5 cut(s) 47, 56, 239, 877, 1280
MhlI GDGCHC 1 cut(s) 1015
MlyI GAGTC 1 cut(s) 829
MnlI CCTC 7 cut(s) 199, 288, 296, 459, 506, 563, 1188
MroXI GAANNNNTTC 1 cut(s) 577
MseI TTAA 9 cut(s) 660, 675, 735, 825, 857, 1065, 1115, 1214, 1269
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 118
MspCI CTTAAG 1 cut(s) 1268
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeII GATC 4 cut(s) 432, 531, 646, 796
NlaIII CATG 2 cut(s) 283, 1247
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 7 cut(s) 319, 354, 494, 586, 832, 904, 1232
PflMI CCANNNNNTGG 1 cut(s) 1244
PkrI GCNGC 4 cut(s) 120, 460, 949, 1153
PleI GAGTC 1 cut(s) 828
PpsI GAGTC 1 cut(s) 828
PsiI TTATAA 1 cut(s) 1182
PspFI CCCAGC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 283, 382
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 4 cut(s) 27, 478, 771, 882
RsaNI GTAC 4 cut(s) 26, 477, 770, 881
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 9 cut(s) 660, 675, 735, 825, 857, 1065, 1115, 1214, 1269
SatI GCNGC 4 cut(s) 119, 459, 948, 1152
Sau3AI GATC 4 cut(s) 432, 531, 646, 796
Sau96I GGNCC 2 cut(s) 283, 382
ScaI AGTACT 2 cut(s) 27, 478
SchI GAGTC 1 cut(s) 829
SduI GDGCHC 1 cut(s) 1015
SfaNI GCATC 4 cut(s) 48, 241, 1078, 1195
SinI GGWCC 2 cut(s) 283, 382
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 773, 1268
SmoI CTYRAG 2 cut(s) 773, 1268
SsiI CCGC 3 cut(s) 50, 606, 1151
SspI AATATT 2 cut(s) 361, 809
SspMI CTAG 3 cut(s) 23, 909, 1082
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 2 cut(s) 126, 1180
TaqI TCGA 5 cut(s) 32, 69, 126, 225, 288
TatI WGTACW 4 cut(s) 25, 476, 769, 880
TauI GCSGC 1 cut(s) 1154
TfiI GAWTC 7 cut(s) 319, 354, 494, 586, 832, 904, 1232
Tru1I TTAA 9 cut(s) 660, 675, 735, 825, 857, 1065, 1115, 1214, 1269
Tru9I TTAA 9 cut(s) 660, 675, 735, 825, 857, 1065, 1115, 1214, 1269
TseI GCWGC 3 cut(s) 118, 458, 947
TspDTI ATGAA 3 cut(s) 507, 824, 1110
Van91I CCANNNNNTGG 1 cut(s) 1244
Vha464I CTTAAG 1 cut(s) 1268
VpaK11BI GGWCC 2 cut(s) 283, 382
XapI RAATTY 3 cut(s) 216, 298, 664
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 3 cut(s) 23, 909, 1082
ZrmI AGTACT 2 cut(s) 27, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.