Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001339

Physical Location & Seq

Genomic Coordinates Forward (+)

10434998 .. 10435624

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0132300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGACATGGACGACTTGGAGTCAATAGGCCATAATAGGAACAGCTCGCGCTGTTGCTTTTGCATCCCTTCGTCGTCGCGGTGGTGGGACCGGGTTCGGAACGACGACGGGTGGTGGTCCAGAGGCAAGAGGGCCATTTACAAGGTCAGGGAGTGGTCCGAGATCGTCGCCGGTCCCAAGTGGAAGACTTTCATCCGGCGCTTCAATCGGAGCAAGAGCGGCGGCGGCGGCGGAGGTAGGCACGGCAAGTTTCAGTACGATCCGTTGAGTTACGCTTTGAACTTCGACGAGGGCCCGGTGGCGGAGGAGGAGGACGAGTCGGGAGGGTTTCGCGATTTCTCGGCCCGGTTCGCTCCGGTGAAGAGCTCGGACCCGGTTCAGTTGGGGAAGGACGTTGCGGTTCATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

8.49

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001339)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_4g25750 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g16110 FvH4_5g34680 FvH4_5g34680 FvH4_5g34680
malus_domestica	MD14G1049100.v1.1
pyrus_communis	pycom14g04040
rosa_chinensis	RchiOBHm_Chr4g0433191 RchiOBHm_Chr7g0235331
rosa_laevigata	RLG00000006775
rosa_multiflora	Rmu_co8059592.1_g000001 Rmu_sc0000957.1_g000011 Rmu_sc0000962.1_g000009 Rmu_sc0002882.1_g000047 Rmu_sc0004637.1_g000016 Rmu_sc0004657.1_g000071 Rmu_sc0031691.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028630 Rroxscaffold_2G00103020 Rroxscaffold_2G00103050 Rroxscaffold_3G00226110 Rroxscaffold_5G00346070 Rroxscaffold_5G00346080
rosa_rugosa	Rorug05G0474500 Rorug05G0474600 Rorug05G0474600 Rorug05G0474600 Rorug07G0132300 Rorug07G0289900
rosa_samantha	Rh3DG202500 Rh4AG320400 Rh4AG320600 Rh4AG320800 Rh4DG324000 Rh4DG324400 Rh4DG324500 Rh4DG324800 Rh7AG265300 Rh7AG444900 Rh7CG282100 Rh7CG465400 Rh7CG465500 Rh7DG433700
rosa_wichuraiana	Rw0G008720 Rw4G027820 Rw7G022720 Rw7G036950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	3 cut(s)	49, 79, 333
AciI	CCGC	8 cut(s)	79, 219, 222, 225, 228, 231, 302, 398
AclWI	GGATC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	205, 280
AhdI	GACNNNNNGTC	1 cut(s)	19
AluBI	AGCT	2 cut(s)	45, 366
AluI	AGCT	2 cut(s)	45, 366
Alw21I	GWGCWC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	4 cut(s)	28, 132, 292, 342
ApaI	GGGCCC	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	51, 201
AspS9I	GGNCC	9 cut(s)	88, 117, 132, 156, 173, 292, 293, 343, 370
AsuC2I	CCSGG	4 cut(s)	92, 296, 346, 374
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	5 cut(s)	88, 117, 156, 173, 370
BaeGI	GKGCMC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	296, 368
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	259
BcnI	CCSGG	4 cut(s)	92, 296, 346, 374
BfoI	RGCGCY	1 cut(s)	202
BisI	GCNGC	4 cut(s)	220, 223, 226, 229
BlsI	GCNGC	4 cut(s)	221, 224, 227, 230
Bme1390I	CCNGG	4 cut(s)	92, 296, 346, 374
Bme18I	GGWCC	5 cut(s)	88, 117, 156, 173, 370
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	9 cut(s)	88, 117, 132, 156, 173, 292, 293, 343, 370
BmiI	GGNNCC	4 cut(s)	89, 175, 294, 372
BmrFI	CCNGG	4 cut(s)	92, 296, 346, 374
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	191
BpuMI	CCSGG	4 cut(s)	92, 296, 346, 374
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	170
BseGI	GGATG	2 cut(s)	63, 192
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseRI	GAGGAG	2 cut(s)	320, 323
BseSI	GKGCMC	1 cut(s)	296
Bsh1236I	CGCG	3 cut(s)	49, 79, 333
BshFI	GGCC	4 cut(s)	30, 134, 294, 344
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	7 cut(s)	91, 171, 196, 296, 346, 356, 374
BslFI	GGGAC	2 cut(s)	101, 159
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	101, 159
BsnI	GGCC	4 cut(s)	30, 134, 294, 344
Bsp120I	GGGCCC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	296, 368
Bsp143I	GATC	2 cut(s)	162, 259
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	8 cut(s)	79, 219, 222, 225, 228, 231, 302, 398
BspANI	GGCC	4 cut(s)	30, 134, 294, 344
BspFNI	CGCG	3 cut(s)	49, 79, 333
BspLI	GGNNCC	4 cut(s)	89, 175, 294, 372
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	2 cut(s)	162, 259
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	63, 192
BstFNI	CGCG	3 cut(s)	49, 79, 333
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	51, 201
BstKTI	GATC	2 cut(s)	165, 262
BstMBI	GATC	2 cut(s)	162, 259
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 225, 228, 350, 404
BstSCI	CCNGG	4 cut(s)	90, 294, 344, 372
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	3 cut(s)	49, 79, 333
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	4 cut(s)	30, 134, 294, 344
BtsCI	GGATG	2 cut(s)	63, 192
BtuMI	TCGCGA	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	2 cut(s)	51, 201
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	9 cut(s)	88, 117, 132, 156, 173, 292, 293, 343, 370
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	7, 404
CviJI	RGCY	6 cut(s)	30, 45, 134, 294, 344, 366
CviKI_1	RGCY	6 cut(s)	30, 45, 134, 294, 344, 366
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	2 cut(s)	164, 261
DpnII	GATC	2 cut(s)	162, 259
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	356
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	356
EciI	GGCGGA	2 cut(s)	246, 317
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	2 cut(s)	296, 368
Eco47I	GGWCC	5 cut(s)	88, 117, 156, 173, 370
Eco53kI	GAGCTC	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	292
EcoT38I	GRGCYC	2 cut(s)	296, 368
FaeI	CATG	2 cut(s)	10, 407
FaiI	YATR	3 cut(s)	8, 33, 405
FaqI	GGGAC	2 cut(s)	101, 159
FatI	CATG	2 cut(s)	6, 403
Fnu4HI	GCNGC	4 cut(s)	220, 223, 226, 229
FokI	GGATG	2 cut(s)	50, 179
FriOI	GRGCYC	2 cut(s)	296, 368
Fsp4HI	GCNGC	4 cut(s)	220, 223, 226, 229
GlaI	GCGC	2 cut(s)	50, 200
GluI	GCNGC	4 cut(s)	220, 223, 226, 229
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	30, 134, 294, 344
HapII	CCGG	7 cut(s)	91, 171, 196, 296, 346, 356, 374
HhaI	GCGC	2 cut(s)	51, 201
Hin1II	CATG	2 cut(s)	10, 407
Hin6I	GCGC	2 cut(s)	49, 199
HinP1I	GCGC	2 cut(s)	49, 199
HinfI	GANTC	2 cut(s)	20, 317
HpaII	CCGG	7 cut(s)	91, 171, 196, 296, 346, 356, 374
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	99, 160, 210, 370
Hpy188III	TCNNGA	3 cut(s)	120, 321, 332
Hpy99I	CGWCG	6 cut(s)	76, 79, 107, 110, 170, 290
HpyAV	CCTTC	2 cut(s)	78, 382
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 225, 228, 350, 404
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	10, 407
HspAI	GCGC	2 cut(s)	49, 199
Kzo9I	GATC	2 cut(s)	162, 259
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	210, 358
LpnPI	CCDG	9 cut(s)	104, 133, 133, 184, 209, 309, 359, 369, 387
LweI	GCATC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	2 cut(s)	164, 261
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	2 cut(s)	162, 259
MboII	GAAGA	2 cut(s)	196, 373
MhlI	GDGCHC	2 cut(s)	296, 368
MlyI	GAGTC	2 cut(s)	29, 326
MnlI	CCTC	8 cut(s)	116, 123, 227, 283, 298, 301, 304, 317
MroXI	GAANNNNTTC	1 cut(s)	188
MspI	CCGG	7 cut(s)	91, 171, 196, 296, 346, 356, 374
MspR9I	CCNGG	4 cut(s)	92, 296, 346, 374
MvnI	CGCG	3 cut(s)	49, 79, 333
MwoI	GCNNNNNNNGC	5 cut(s)	219, 225, 228, 350, 404
NciI	CCSGG	4 cut(s)	92, 296, 346, 374
NdeII	GATC	2 cut(s)	162, 259
NlaIII	CATG	2 cut(s)	10, 407
NlaIV	GGNNCC	4 cut(s)	89, 175, 294, 372
NmeAIII	GCCGAG	1 cut(s)	320
NruI	TCGCGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	221, 224, 227, 230
PleI	GAGTC	2 cut(s)	28, 325
PpsI	GAGTC	2 cut(s)	28, 325
Psp124BI	GAGCTC	1 cut(s)	368
PspN4I	GGNNCC	4 cut(s)	89, 175, 294, 372
PspOMI	GGGCCC	1 cut(s)	292
PspPI	GGNCC	9 cut(s)	88, 117, 132, 156, 173, 292, 293, 343, 370
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	356
SatI	GCNGC	4 cut(s)	220, 223, 226, 229
Sau3AI	GATC	2 cut(s)	162, 259
Sau96I	GGNCC	9 cut(s)	88, 117, 132, 156, 173, 292, 293, 343, 370
SchI	GAGTC	2 cut(s)	29, 326
ScrFI	CCNGG	4 cut(s)	92, 296, 346, 374
SduI	GDGCHC	2 cut(s)	296, 368
SetI	ASST	5 cut(s)	47, 147, 238, 368, 396
SfaNI	GCATC	1 cut(s)	72
SinI	GGWCC	5 cut(s)	88, 117, 156, 173, 370
SsiI	CCGC	8 cut(s)	79, 219, 222, 225, 228, 231, 302, 398
SstI	GAGCTC	1 cut(s)	368
StyD4I	CCNGG	4 cut(s)	90, 294, 344, 372
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	285
TauI	GCSGC	4 cut(s)	222, 225, 228, 231
TspDTI	ATGAA	2 cut(s)	181, 392
TspGWI	ACGGA	1 cut(s)	252
VpaK11BI	GGWCC	5 cut(s)	88, 117, 156, 173, 370
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.