Rroxscaffold_5G00346080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001339
Physical Location & Seq
Forward (+)
16743079 .. 16749445
6367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346080.1

Sequence Viewer

Length: 210 bp
ATGGCTACGGCTATGAACTGCTCCAGGCAGCTCTTGCTTCGGTGGTTGGAAGCAAAGCCTTGGTGGTGGTCTGGGATCGACGATGATCTCGAGCGGTTGGACAGAGTTTTGGTTGAAAATTCAGTCTCGATCGACGACGTTGAAAACAAGCACTCTATGTCCAAAGCCTCGCAATCCGTTAATCGAAGATTGCAAGGGTGTTATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.04

Weight (kDa)

5.67

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 94
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 118
AgsI TTSAA 2 cut(s) 116, 143
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 3 cut(s) 75, 85, 129
BspACI CCGC 1 cut(s) 94
BspPI GGATC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 3 cut(s) 75, 85, 129
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 78, 88, 132
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 3 cut(s) 75, 85, 129
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 40
CviJI RGCY 5 cut(s) 5, 11, 31, 58, 167
CviKI_1 RGCY 5 cut(s) 5, 11, 31, 58, 167
DpnI GATC 3 cut(s) 77, 87, 131
DpnII GATC 3 cut(s) 75, 85, 129
Eco130I CCWWGG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaiI YATR 2 cut(s) 14, 158
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 89, 127, 207
Hpy99I CGWCG 3 cut(s) 83, 137, 140
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 138
Kzo9I GATC 3 cut(s) 75, 85, 129
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 10, 37, 57
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 1 cut(s) 138
MalI GATC 3 cut(s) 77, 87, 131
MbiI CCGCTC 1 cut(s) 94
MboI GATC 3 cut(s) 75, 85, 129
MboII GAAGA 1 cut(s) 198
MluCI AATT 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 27, 78
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 3 cut(s) 75, 85, 129
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PkrI GCNGC 1 cut(s) 30
Ple19I CGATCG 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PvuI CGATCG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 75, 85, 129
ScrFI CCNGG 1 cut(s) 25
SetI ASST 2 cut(s) 33, 141
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 141
TaqI TCGA 5 cut(s) 78, 90, 128, 132, 184
TasI AATT 1 cut(s) 118
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 166
XapI RAATTY 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.