Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

13230286 .. 13230804

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTCATGTTTGATACAAGTACTACTGCCAATATTGAAGCAGCTCCAGAAAGTTACAACGCTCGCGGGGAGATTTTCGAAGACATGATTGTTGCAACGGGTTTGAATTCATCTGAGCCTTGGAATTTGAATCAGCATCAAGTCCAGGCTTTCCCACCTCCGGCAACAATGTCATTTAATACTACAAATAGTAGTACTAATAATGTTACCATGGACACAAACTATTTGCCACCGTTGATCGAGAACATGGACAACATGGTACCGAACGTTGATCATCATCATCAATCTTGTCACAATATTGATGAGGAGGGAGATCATGATCAGGTGGCCTTGGAGTGCTTAATGCAAAGGCATGAGTTGAATGAATGGGTTGTTTCCCAGCAACAATGCTCTAACTTTCTATTTTGGGACAATCTTGTTGATGATCAAGCGATAGTACTTGTTGGACAAGATCATGGGATTGCACATCCTGCTTCATCAAACGCAGTACAACTGTCTTCTTTTCCTCCATCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

173

Amino Acids

19.24

Weight (kDa)

4.2

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	259
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	66
AclI	AACGTT	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	106, 124
AfaI	GTAC	5 cut(s)	22, 196, 261, 438, 489
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	38, 106, 130, 361
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	2 cut(s)	106, 124
Asp718I	GGTACC	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	259
BbsI	GAAGAC	2 cut(s)	87, 489
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	3 cut(s)	271, 319, 424
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmcAI	AGTACT	3 cut(s)	22, 196, 438
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	87, 489
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	78
BsaBI	GATNNNNATC	2 cut(s)	276, 318
BsaJI	CCNNGG	3 cut(s)	119, 210, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse8I	GATNNNNATC	2 cut(s)	276, 318
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	119, 210, 330
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	2 cut(s)	276, 318
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	78
Bsp143I	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	119, 210, 330
BssMI	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
BssT1I	CCWWGG	3 cut(s)	119, 210, 330
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	234, 495
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	6 cut(s)	240, 274, 316, 322, 427, 454
BstMBI	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	2 cut(s)	87, 489
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	316
Csp6I	GTAC	5 cut(s)	21, 195, 260, 437, 488
CviAII	CATG	8 cut(s)	7, 85, 211, 247, 256, 317, 353, 455
CviJI	RGCY	4 cut(s)	44, 118, 149, 329
CviKI_1	RGCY	4 cut(s)	44, 118, 149, 329
CviQI	GTAC	5 cut(s)	21, 195, 260, 437, 488
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	6 cut(s)	239, 273, 315, 321, 426, 453
DpnII	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
Eco130I	CCWWGG	3 cut(s)	119, 210, 330
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	3 cut(s)	119, 210, 330
ErhI	CCWWGG	3 cut(s)	119, 210, 330
FaeI	CATG	8 cut(s)	10, 88, 214, 250, 259, 320, 356, 458
FaiI	YATR	9 cut(s)	8, 86, 212, 248, 257, 318, 354, 456, 517
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	8 cut(s)	6, 84, 210, 246, 255, 316, 352, 454
FauI	CCCGC	1 cut(s)	59
FbaI	TGATCA	3 cut(s)	271, 319, 424
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
GsaI	CCCAGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	8 cut(s)	10, 88, 214, 250, 259, 320, 356, 458
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	3 cut(s)	47, 241, 317
HpyCH4III	ACNGT	2 cut(s)	234, 495
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	95, 346, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	8 cut(s)	10, 88, 214, 250, 259, 320, 356, 458
KpnI	GGTACC	1 cut(s)	263
Ksp22I	TGATCA	3 cut(s)	271, 319, 424
Kzo9I	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	60, 131, 158, 174, 308, 392, 483
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	53, 205, 290
MalI	GATC	6 cut(s)	239, 273, 315, 321, 426, 453
MboI	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
MboII	GAAGA	2 cut(s)	92, 489
MluCI	AATT	2 cut(s)	106, 124
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	4 cut(s)	168, 298, 301, 516
MseI	TTAA	2 cut(s)	177, 341
MslI	CAYNNNNRTG	1 cut(s)	514
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
NlaIII	CATG	8 cut(s)	10, 88, 214, 250, 259, 320, 356, 458
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	290
NspV	TTCGAA	1 cut(s)	78
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	261
RsaI	GTAC	5 cut(s)	22, 196, 261, 438, 489
RsaNI	GTAC	5 cut(s)	21, 195, 260, 437, 488
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	2 cut(s)	177, 341
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	6 cut(s)	237, 271, 313, 319, 424, 451
ScaI	AGTACT	3 cut(s)	22, 196, 438
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	4 cut(s)	46, 160, 270, 327
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	514
Sse9I	AATT	2 cut(s)	106, 124
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	2 cut(s)	34, 298
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	3 cut(s)	119, 210, 330
TaaI	ACNGT	2 cut(s)	234, 495
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	78, 240
TasI	AATT	2 cut(s)	106, 124
TatI	WGTACW	4 cut(s)	20, 194, 436, 487
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	177, 341
Tru9I	TTAA	2 cut(s)	177, 341
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	99, 378, 465
XapI	RAATTY	2 cut(s)	106, 124
ZrmI	AGTACT	3 cut(s)	22, 196, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.