pycom14g18330

Transcription initiation factor TFIID

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0003127
Physical Location & Seq
Forward (+)
20011071 .. 20013295
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
ATGCTTCTGTTGGCCATTCCTCATGCTATTGCTATGGTCAGAGCTGCAGACAAGAAAAGTCCAAGGGAGGCTGTGGAGTTTGTTTTACAACTTTTGAAGTACAATGACAACAATGGGAACCCTTACTCTGATGTCTTCTGGCTTGCTGCATTAATCAAGTCTGTTGGAGAACTTGAAATCGGGCAACAGAGTATTCTCCTGTTATCGTCTCTTCTGAAGCGCATTGATCACCTCTTGCAATTTGACAGGTTGATGCCTAGCTACAATGGTATCTTGTCAGTCGGCTGTATTAGGGCCCTGACTCAGGTTGCCCTAAAACTGTTGGGATTTGTTCCTCTGGATCGCGTGTTTGAACTTGTAAAACCCTTTTGGGATATCAAAGCTGAATGGCAAGTTCGGGCTGAAGCAAGCAGAGCACTCCTTGATTTTGAATTCCATTGCAAAGGCATTGATGCAGCTTTGCAACTGTTTATCAAATATTTAGATGAAGAGATGTCCTTCAGAGGGCAGGTGAAGCTGGCCGTGCATGCTATGAGGTTATGCCAGATTAGAGGTGGATCTGATCTTGCCGACAACATCAGGAGCGAAACTCTTGTGGCTTTGCTTCGTCTACTTGAAGGTGAAGCGGAAAGCTTCCGAGAGCAGAAAAACATCTTTGCTGCTTTCATCCCAGAAAGTAAATATGTGGAACCACCTTCCGAAGCTCCAAACCTTTCACATGGTGATTTAACTGTTCCTGAAACTTCCAGCAGCTTCCAAGAACGATTTGGGTGCTCCAGAACCTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Peptidase_M1

Protein Analysis

264

Amino Acids

29.66

Weight (kDa)

5.81

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TAF2_C PF25577 2 - 173 6.4e-18 TAF2-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 610
AccII CGCG 1 cut(s) 345
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 348, 565
AcoI YGGCCR 2 cut(s) 12, 519
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 3 cut(s) 236, 423, 484
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 304, 504
AgsI TTSAA 5 cut(s) 97, 176, 353, 431, 617
AluBI AGCT 8 cut(s) 44, 261, 383, 458, 517, 633, 704, 753
AluI AGCT 8 cut(s) 44, 261, 383, 458, 517, 633, 704, 753
Alw21I GWGCWC 2 cut(s) 418, 776
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 2 cut(s) 348, 565
AoxI GGCC 3 cut(s) 12, 294, 519
ApaI GGGCCC 1 cut(s) 298
ApeKI GCWGC 5 cut(s) 44, 146, 455, 659, 750
ApoI RAATTY 1 cut(s) 431
AseI ATTAAT 1 cut(s) 152
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 294, 295
AsuHPI GGTGA 4 cut(s) 221, 523, 632, 734
BaeGI GKGCMC 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BalI TGGCCA 1 cut(s) 14
BanII GRGCYC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 418, 776
BbvI GCAGC 5 cut(s) 31, 133, 467, 646, 762
BceAI ACGGC 1 cut(s) 506
BcgI CGANNNNNNTGC 2 cut(s) 753, 787
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 5 cut(s) 45, 147, 456, 660, 751
BlsI GCNGC 5 cut(s) 46, 148, 457, 661, 752
BmgT120I GGNCC 2 cut(s) 294, 295
BmiI GGNNCC 3 cut(s) 119, 296, 690
BmsI GCATC 2 cut(s) 243, 442
BpiI GAAGAC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 574, 606
BpmI CTGGAG 1 cut(s) 760
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 504
Bse3DI GCAATG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 2 cut(s) 304, 504
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 5 cut(s) 31, 133, 467, 646, 762
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 3 cut(s) 14, 296, 521
BsiHKAI GWGCWC 2 cut(s) 418, 776
BslI CCNNNNNNNGG 2 cut(s) 304, 504
BsmAI GTCTC 1 cut(s) 213
BsmBI CGTCTC 1 cut(s) 213
BsnI GGCC 3 cut(s) 14, 296, 521
Bsp120I GGGCCC 1 cut(s) 294
Bsp1286I GDGCHC 3 cut(s) 298, 418, 776
Bsp143I GATC 4 cut(s) 226, 340, 557, 562
BspACI CCGC 1 cut(s) 626
BspANI GGCC 3 cut(s) 14, 296, 521
BspCNI CTCAG 1 cut(s) 316
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 119, 296, 690
BspMAI CTGCAG 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 2 cut(s) 348, 565
BsrDI GCAATG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 4 cut(s) 226, 340, 557, 562
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 321, 468, 733
Bst6I CTCTTC 2 cut(s) 216, 483
BstC8I GCNNGC 4 cut(s) 144, 409, 519, 528
BstDEI CTNAG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 4 cut(s) 229, 343, 560, 565
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 4 cut(s) 226, 340, 557, 562
BstMWI GCNNNNNNNGC 4 cut(s) 413, 514, 523, 527
BstNSI RCATGY 1 cut(s) 530
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 5 cut(s) 31, 133, 467, 646, 762
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 3 cut(s) 14, 296, 521
BtsCI GGATG 1 cut(s) 666
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 4 cut(s) 144, 409, 519, 528
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 294, 295
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 23, 527, 719
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 1 cut(s) 303
DpnI GATC 4 cut(s) 228, 342, 559, 564
DpnII GATC 4 cut(s) 226, 340, 557, 562
DraIII CACNNNGTG 1 cut(s) 722
EaeI YGGCCR 2 cut(s) 12, 519
Eam1104I CTCTTC 2 cut(s) 216, 483
EarI CTCTTC 2 cut(s) 216, 483
Eco130I CCWWGG 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 376
Eco57I CTGAAG 3 cut(s) 236, 423, 484
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoO109I RGGNCCY 2 cut(s) 294, 295
EcoRI GAATTC 1 cut(s) 431
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 3 cut(s) 26, 530, 722
FaiI YATR 7 cut(s) 24, 35, 528, 533, 541, 684, 720
FatI CATG 3 cut(s) 22, 526, 718
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 5 cut(s) 45, 147, 456, 660, 751
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 5 cut(s) 45, 147, 456, 660, 751
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 221
GluI GCNGC 5 cut(s) 45, 147, 456, 660, 751
GsuI CTGGAG 1 cut(s) 760
HaeIII GGCC 3 cut(s) 14, 296, 521
HhaI GCGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 26, 530, 722
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 1 cut(s) 301
HphI GGTGA 4 cut(s) 221, 523, 632, 734
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 7 cut(s) 41, 130, 216, 503, 562, 638, 700
Hpy188III TCNNGA 4 cut(s) 338, 580, 737, 777
Hpy8I GTNNAC 1 cut(s) 611
HpyAV CCTTC 3 cut(s) 508, 611, 705
HpyCH4III ACNGT 3 cut(s) 321, 468, 733
HpyCH4V TGCA 7 cut(s) 47, 149, 238, 441, 455, 463, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 514, 523, 527
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 3 cut(s) 26, 530, 722
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 226, 340, 557, 562
LmnI GCTCC 3 cut(s) 582, 709, 779
Lsp1109I GCAGC 5 cut(s) 31, 133, 467, 646, 762
LweI GCATC 2 cut(s) 243, 442
MaeI CTAG 1 cut(s) 258
MalI GATC 4 cut(s) 228, 342, 559, 564
MboI GATC 4 cut(s) 226, 340, 557, 562
MboII GAAGA 3 cut(s) 127, 203, 500
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 3 cut(s) 298, 418, 776
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 2 cut(s) 239, 431
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 7 cut(s) 30, 61, 242, 345, 497, 528, 545
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MseI TTAA 2 cut(s) 152, 728
Msp20I TGGCCA 1 cut(s) 14
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 413, 514, 523, 527
NdeII GATC 4 cut(s) 226, 340, 557, 562
NlaIII CATG 3 cut(s) 26, 530, 722
NlaIV GGNNCC 3 cut(s) 119, 296, 690
NspI RCATGY 1 cut(s) 530
PaeI GCATGC 1 cut(s) 530
PaqCI CACCTGC 1 cut(s) 499
PkrI GCNGC 5 cut(s) 46, 148, 457, 661, 752
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 152
PspN4I GGNNCC 3 cut(s) 119, 296, 690
PspOMI GGGCCC 1 cut(s) 294
PspPI GGNCC 2 cut(s) 294, 295
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 152, 728
SatI GCNGC 5 cut(s) 45, 147, 456, 660, 751
Sau3AI GATC 4 cut(s) 226, 340, 557, 562
Sau96I GGNCC 2 cut(s) 294, 295
SchI GAGTC 1 cut(s) 295
SduI GDGCHC 3 cut(s) 298, 418, 776
SfaNI GCATC 2 cut(s) 243, 442
SfcI CTRYAG 1 cut(s) 45
SphI GCATGC 1 cut(s) 530
Sse9I AATT 2 cut(s) 239, 431
SsiI CCGC 1 cut(s) 626
SspI AATATT 1 cut(s) 479
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 3 cut(s) 321, 468, 733
TasI AATT 2 cut(s) 239, 431
TatI WGTACW 1 cut(s) 99
Tru1I TTAA 2 cut(s) 152, 728
Tru9I TTAA 2 cut(s) 152, 728
TseI GCWGC 5 cut(s) 44, 146, 455, 659, 750
TspDTI ATGAA 2 cut(s) 501, 655
VspI ATTAAT 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 1 cut(s) 431
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 2 cut(s) 551, 764
XmiI GTMKAC 1 cut(s) 610
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.