Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

506111 .. 507022

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAGCGTTCCATGCGTCTATTTCCAACCGCCCTCGTCTTCCTGCTGCTTTTGGTGGCCACCGGGACGATGGTTGCTGAGGGTAGGACCTGCGAGTCTCAGAGTAACCGTTTCAAAGGAACCTGCGTGAGTAAAAGTAACTGTGCTTCTGTTTGCCAAACTGAGGGCTTCCCCGGGGGCAATTGCCGTGGCTTACGCCGTAGATGCTTTTGCACTAGACATTTAAAAGTTAAGTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

81

Amino Acids

8.82

Weight (kDa)

9.69

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	29 - 73	1e-18	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc36I	ACCTGC	2 cut(s)	98, 131
AciI	CCGC	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	3 cut(s)	64, 174, 175
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	171, 183
BcnI	CCSGG	3 cut(s)	64, 174, 175
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	216
BfuAI	ACCTGC	2 cut(s)	98, 131
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	3 cut(s)	64, 174, 175
Bme18I	GGWCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	3 cut(s)	64, 174, 175
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	3 cut(s)	64, 174, 175
BsaJI	CCNNGG	4 cut(s)	172, 173, 174, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseDI	CCNNGG	4 cut(s)	172, 173, 174, 187
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	69, 113, 153
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	63, 174
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	173
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	70, 112, 154
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	2 cut(s)	98, 131
BssECI	CCNNGG	4 cut(s)	172, 173, 174, 187
Bst4CI	ACNGT	2 cut(s)	110, 143
BstDEI	CTNAG	3 cut(s)	78, 99, 162
BstDSI	CCRYGG	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 204
BstSCI	CCNGG	3 cut(s)	62, 172, 173
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	187
BveI	ACCTGC	2 cut(s)	98, 131
Cfr13I	GGNCC	1 cut(s)	87
Cfr9I	CCCGGG	1 cut(s)	173
CseI	GACGC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	3 cut(s)	59, 168, 192
CviKI_1	RGCY	3 cut(s)	59, 168, 192
DdeI	CTNAG	3 cut(s)	78, 99, 162
DraI	TTTAAA	1 cut(s)	225
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	87
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	63, 174
HgaI	GACGC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	63, 174
Hpy188I	TCNGA	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	110, 143
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 204
HpyF3I	CTNAG	3 cut(s)	78, 99, 162
Hsp92II	CATG	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	56, 76, 103, 136, 187
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	104, 137
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	44, 73, 157
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	2 cut(s)	224, 231
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	2 cut(s)	63, 174
MspR9I	CCNGG	3 cut(s)	64, 174, 175
MunI	CAATTG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	13, 204
NciI	CCSGG	3 cut(s)	64, 174, 175
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	87
PspPPI	RGGWCCY	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	224, 231
SatI	GCNGC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	64, 174, 175
SetI	ASST	2 cut(s)	92, 125
SfaNI	GCATC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	87
SmaI	CCCGGG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	62, 172, 173
TaaI	ACNGT	2 cut(s)	110, 143
TasI	AATT	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	224, 231
Tru9I	TTAA	2 cut(s)	224, 231
TseI	GCWGC	1 cut(s)	46
TspMI	CCCGGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.