Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001027

Physical Location & Seq

Genomic Coordinates Forward (+)

7591518 .. 7592709

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATTTCCCTACCATGGAAAACCATTGTACTCACTATACTTCTCCTCCACATAACTTCTTCCTCCTTTGAAGCAGAAGCTTTTCCTTCTCTGCTCGATAGAATTACAGGGTTGCCGGGTCAGCCCCCAGTCGGGTTCCAGCAGTATTCGGGTTATGTGACCGTTGATGAGAAAAAACAGAAAGCTCTGTTTTACTACTTAGCTGAAGCAGAAATAGATCCAGCTTCCAAGCCTCTTGTCCTCTGGCTCAATGGAGGTCCTGGTTGTTCTTCCCTTGGAGTCGGGGCATTTTCTGAGAACGGACCGTTCAGGCCCAAAGGAGAAGTCTTGGTTCGAAATGAACATAGCTGGAATACAGAAGCAAACATGCTGTACCTGGAGACACCAATTGGAGTGGGGTTCTCTTACTCAACGGATACTTCTTCCTATGAGGGTGTAACCGATCGCATCACAGACATCCAGGGACAATCTTCTCTTCTTGCAAAAGTGGTTAGAAAAGTTTCCCCAATACAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0055044 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

173

Amino Acids

18.81

Weight (kDa)

5.38

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	39 - 146	9.4e-46	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28110 AT1G28110 AT2G33530
fragaria_vesca	FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_4g22840 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210 FvH4_5g09210
malus_domestica	MD06G1132500.v1.1 MD08G1237600.v1.1 MD08G1237700.v1.1 MD08G1237800.v1.1 MD08G1238200.v1.1 MD08G1238400.v1.1 MD13G1129200.v1.1 MD14G1148900.v1.1 MD16G1129200.v1.1
prunus_persica	Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.1G217200_v2.0.a1 Prupe.5G143500_v2.0.a1 Prupe.7G030500_v2.0.a1 Prupe.7G030500_v2.0.a1
pyrus_communis	pycom06g12410 pycom08g20620 pycom08g20640 pycom08g20650 pycom08g20670 pycom13g11220 pycom14g12370 pycom16g10950
rosa_chinensis	RchiOBHm_Chr4g0429071 RchiOBHm_Chr7g0188951
rosa_laevigata	RLG00000004647 RLG00000007099
rosa_multiflora	Rmu_co8506825.1_g000001 Rmu_sc0001753.1_g000029 Rmu_sc0008629.1_g000021 Rmu_ssc0000113.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265910 Rroxscaffold_5G00370710
rosa_rugosa	Rorug04G0232700 Rorug04G0232800 Rorug04G0232900 Rorug04G0232900 Rorug06G0495100
rosa_samantha	Rh4AG288500 Rh4BG294700 Rh4CG310200 Rh4DG291600 Rh7BG101900 Rh7CG103200
rosa_wichuraiana	Rw4G025010 Rw7G008600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	30, 374
AfiI	CCNNNNNNNGG	3 cut(s)	15, 131, 132
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	3 cut(s)	259, 375, 459
AluBI	AGCT	5 cut(s)	80, 185, 203, 224, 348
AluI	AGCT	5 cut(s)	80, 185, 203, 224, 348
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
Asp700I	GAANNNNTTC	2 cut(s)	81, 499
AspS9I	GGNCC	3 cut(s)	257, 302, 312
AsuC2I	CCSGG	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	257, 302
BciT130I	CCWGG	3 cut(s)	261, 377, 461
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	409
Bme1390I	CCNGG	4 cut(s)	117, 261, 377, 461
Bme18I	GGWCC	2 cut(s)	257, 302
BmgT120I	GGNCC	3 cut(s)	257, 302, 312
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	4 cut(s)	117, 261, 377, 461
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	14, 274, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 131, 132
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	3 cut(s)	261, 377, 461
BseDI	CCNNGG	3 cut(s)	14, 274, 460
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	15, 131, 132
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	3 cut(s)	15, 131, 132
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	217, 442
Bsp19I	CCATGG	1 cut(s)	14
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	14, 274, 460
BssMI	GATC	2 cut(s)	217, 442
BssT1I	CCWWGG	2 cut(s)	14, 274
Bst2UI	CCWGG	3 cut(s)	261, 377, 461
Bst4CI	ACNGT	2 cut(s)	163, 306
Bst6I	CTCTTC	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	199, 294
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	2 cut(s)	220, 445
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	217, 442
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	3 cut(s)	261, 377, 461
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	4 cut(s)	115, 259, 375, 459
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	456
Cfr13I	GGNCC	3 cut(s)	257, 302, 312
CpoI	CGGWCCG	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	29, 373
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CspI	CGGWCCG	1 cut(s)	302
CviAII	CATG	2 cut(s)	15, 367
CviJI	RGCY	9 cut(s)	80, 124, 185, 203, 224, 232, 247, 313, 348
CviKI_1	RGCY	9 cut(s)	80, 124, 185, 203, 224, 232, 247, 313, 348
CviQI	GTAC	2 cut(s)	29, 373
DdeI	CTNAG	2 cut(s)	199, 294
DpnI	GATC	2 cut(s)	219, 444
DpnII	GATC	2 cut(s)	217, 442
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	2 cut(s)	14, 274
Eco47I	GGWCC	2 cut(s)	257, 302
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	259, 375, 459
EcoT14I	CCWWGG	2 cut(s)	14, 274
ErhI	CCWWGG	2 cut(s)	14, 274
FaeI	CATG	2 cut(s)	18, 370
FaiI	YATR	7 cut(s)	16, 38, 53, 156, 345, 368, 429
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	2 cut(s)	14, 366
FokI	GGATG	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	2 cut(s)	18, 370
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	163, 306
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	199, 294
Hsp92II	CATG	2 cut(s)	18, 370
Kzo9I	GATC	2 cut(s)	217, 442
LweI	GCATC	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	157, 436
MalI	GATC	2 cut(s)	219, 444
MboI	GATC	2 cut(s)	217, 442
MboII	GAAGA	5 cut(s)	51, 261, 414, 462, 467
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	102, 387
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	56, 73, 243, 248, 251, 424
MroXI	GAANNNNTTC	2 cut(s)	81, 499
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	4 cut(s)	117, 261, 377, 461
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	3 cut(s)	261, 377, 461
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	217, 442
NlaIII	CATG	2 cut(s)	18, 370
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	81, 499
Ple19I	CGATCG	1 cut(s)	445
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	259, 375, 459
PspGI	CCWGG	3 cut(s)	259, 375, 459
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	257, 302, 312
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	217
PvuI	CGATCG	1 cut(s)	445
RsaI	GTAC	2 cut(s)	30, 374
RsaNI	GTAC	2 cut(s)	29, 373
Rsr2I	CGGWCCG	1 cut(s)	302
RsrII	CGGWCCG	1 cut(s)	302
Sau3AI	GATC	2 cut(s)	217, 442
Sau96I	GGNCC	3 cut(s)	257, 302, 312
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	4 cut(s)	117, 261, 377, 461
SetI	ASST	7 cut(s)	82, 187, 205, 226, 259, 350, 378
SfaNI	GCATC	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	2 cut(s)	257, 302
Sse9I	AATT	2 cut(s)	102, 387
StyD4I	CCNGG	4 cut(s)	115, 259, 375, 459
StyI	CCWWGG	2 cut(s)	14, 274
TaaI	ACNGT	2 cut(s)	163, 306
TaqI	TCGA	2 cut(s)	96, 334
TasI	AATT	2 cut(s)	102, 387
TatI	WGTACW	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	315, 428
VpaK11BI	GGWCC	2 cut(s)	257, 302
XceI	RCATGY	1 cut(s)	370
XmnI	GAANNNNTTC	2 cut(s)	81, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.