pycom16g23240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002107
Physical Location & Seq
Forward (+)
23914456 .. 23915418
963 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGATGAAATTTTATATGCTTTTGGATTTCGTGGGAATTCTAAGAGAAACCCTCAAACTTTTCTTGAAAAATGTGAAGCTCATGTCCTGCATCATCTTACTCATAATTTCCTTTAGCTCTATCCTCTTGGTGAGCAATATGTACTCCATCAAACCATTGCTCATTGATTTCACCCTCAATGCAGCCCTCCTACCTTCTACGGTCGCTGGTACCCCCGACTTCAACCACCTTTTGGTTACTTTGAAAAAGGACCTCCGGTTATTTGCTGGACTTGAGTGGCTTTTCATTTCCGCTTCCTGTTTTGCCTCATTATTCTTTACAATAGCTTCAATTTTAGCATCAGGGGTCACTTATCGTGGTCAAGACCTGTCTGTCAAGGAACTCCTATCAAGGGCTGTGAAATCGTTGAAAAGACCATTTGTTACTTGGTTTTACGTAACCCTACTTGATTTAGGCTTTTATCTATTTATTATAGTCTTTCTGCTTCCTTTGTTGCTGACTTTTGATCTTACATATACTACGCCTGCTTTCTCCAAAACCATATTTCTTTTGGCTTTGGTTTTCCAGGCCTATCTAGCTGTTGTTTGGAATTTAGCACTAGTTGTTTCAGTACTCGAAAAAAAAAGTGGCATCGAGGCACTAGGGAAGGCTGGACAGCTTATTAAAGGATCTATGCTACGGGGATTTTTCCTAAATCTTTTGTCCGGAGCATTCTCTCTTTTGGTCTTGTATGGTTGGCACAAGACTGGGACAAACAAGTCACTAAATGCGGCAACGATTCCATTGCTCCTCATGAATCTTATATTCTGCTTCATCAGGATATCCATGCTAATGATTTATACTGTCCTTTACCATAAGTGTAAGGAGACTCATGGAGAAGAGCTTGAAATGCAAGGAAGCACCGAATATACGAAAGTGGCCACATCTGCATCTGCCCCTTTTATCAGTGCAGATGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.74

Weight (kDa)

9.31

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 371, 757
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 704
AciI CCGC 2 cut(s) 291, 770
AclWI GGATC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 3 cut(s) 8, 36, 589
AfaI GTAC 3 cut(s) 143, 211, 612
AfiI CCNNNNNNNGG 2 cut(s) 232, 391
AgsI TTSAA 6 cut(s) 67, 223, 244, 330, 409, 887
AhlI ACTAGT 1 cut(s) 598
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 6 cut(s) 79, 117, 326, 578, 658, 883
AluI AGCT 6 cut(s) 79, 117, 326, 578, 658, 883
Alw26I GTCTC 1 cut(s) 860
AlwI GGATC 1 cut(s) 676
Aor13HI TCCGGA 1 cut(s) 704
AoxI GGCC 2 cut(s) 567, 918
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 8, 36, 589
Asp718I GGTACC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 142, 163
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 920
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 766, 800
BciT130I CCWGG 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 860
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 3 cut(s) 575, 599, 641
BisI GCNGC 2 cut(s) 183, 771
BlsI GCNGC 2 cut(s) 184, 772
BmcAI AGTACT 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 4 cut(s) 99, 347, 639, 938
BmuI ACTGGG 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpuEI CTTGAG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 436
BsaWI WCCGGW 2 cut(s) 255, 704
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 391
Bse1I ACTGG 1 cut(s) 751
Bse3DI GCAATG 2 cut(s) 155, 782
BseAI TCCGGA 1 cut(s) 704
BseBI CCWGG 1 cut(s) 566
BseLI CCNNNNNNNGG 2 cut(s) 232, 391
BseMI GCAATG 2 cut(s) 155, 782
BseNI ACTGG 1 cut(s) 751
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 569, 920
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 256, 705
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 2 cut(s) 232, 391
BsmAI GTCTC 1 cut(s) 860
BsmFI GGGAC 1 cut(s) 763
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 2 cut(s) 569, 920
Bsp13I TCCGGA 1 cut(s) 704
Bsp143I GATC 2 cut(s) 505, 668
BspACI CCGC 2 cut(s) 291, 770
BspANI GGCC 2 cut(s) 569, 920
BspEI TCCGGA 1 cut(s) 704
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 676
BspQI GCTCTTC 1 cut(s) 873
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 155, 782
BsrI ACTGG 1 cut(s) 751
BssMI GATC 2 cut(s) 505, 668
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 202, 844
Bst6I CTCTTC 1 cut(s) 873
BstBAI YACGTR 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 1 cut(s) 41
BstKTI GATC 2 cut(s) 508, 671
BstMAI GTCTC 1 cut(s) 860
BstMBI GATC 2 cut(s) 505, 668
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 4 cut(s) 575, 889, 926, 956
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstSNI TACGTA 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 668
BstYI RGATCY 1 cut(s) 668
BsuRI GGCC 2 cut(s) 569, 920
BtsIMutI CAGTG 1 cut(s) 952
Cac8I GCNNGC 1 cut(s) 525
CciI TCATGA 1 cut(s) 792
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 142, 210, 611
CviAII CATG 5 cut(s) 82, 793, 826, 872, 960
CviQI GTAC 3 cut(s) 142, 210, 611
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 507, 670
DpnII GATC 2 cut(s) 505, 668
DrdI GACNNNNNNGTC 2 cut(s) 371, 757
DseDI GACNNNNNNGTC 2 cut(s) 371, 757
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Eco105I TACGTA 1 cut(s) 436
Eco147I AGGCCT 1 cut(s) 569
Eco32I GATATC 1 cut(s) 822
Eco47I GGWCC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 564
EcoRV GATATC 1 cut(s) 822
FaeI CATG 5 cut(s) 85, 796, 829, 875, 963
FaqI GGGAC 1 cut(s) 763
FatI CATG 5 cut(s) 81, 792, 825, 871, 959
Fnu4HI GCNGC 2 cut(s) 183, 771
Fsp4HI GCNGC 2 cut(s) 183, 771
FspBI CTAG 3 cut(s) 575, 599, 641
GluI GCNGC 2 cut(s) 183, 771
HaeIII GGCC 2 cut(s) 569, 920
HapII CCGG 2 cut(s) 256, 705
Hin1II CATG 5 cut(s) 85, 796, 829, 875, 963
HinfI GANTC 3 cut(s) 778, 796, 868
HpaII CCGG 2 cut(s) 256, 705
HphI GGTGA 2 cut(s) 142, 163
Hpy188III TCNNGA 5 cut(s) 64, 362, 705, 793, 817
HpyAV CCTTC 2 cut(s) 204, 640
HpyCH4III ACNGT 2 cut(s) 202, 844
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 5 cut(s) 90, 182, 892, 929, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 575, 889, 926, 956
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 5 cut(s) 85, 796, 829, 875, 963
Kpn2I TCCGGA 1 cut(s) 704
KpnI GGTACC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 505, 668
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 2 cut(s) 707, 792
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 4 cut(s) 99, 347, 639, 938
MaeI CTAG 3 cut(s) 575, 599, 641
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 5 cut(s) 235, 346, 421, 436, 759
MalI GATC 2 cut(s) 507, 670
MboI GATC 2 cut(s) 505, 668
MboII GAAGA 1 cut(s) 890
MflI RGATCY 1 cut(s) 668
MlsI TGGCCA 1 cut(s) 920
MluCI AATT 5 cut(s) 8, 36, 105, 330, 589
MluNI TGGCCA 1 cut(s) 920
MlyI GAGTC 1 cut(s) 862
MnlI CCTC 8 cut(s) 62, 134, 185, 197, 263, 316, 628, 800
Mox20I TGGCCA 1 cut(s) 920
MroI TCCGGA 1 cut(s) 704
MscI TGGCCA 1 cut(s) 920
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 920
MspI CCGG 2 cut(s) 256, 705
MspR9I CCNGG 1 cut(s) 566
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 4 cut(s) 575, 889, 926, 956
NdeII GATC 2 cut(s) 505, 668
NlaIII CATG 5 cut(s) 85, 796, 829, 875, 963
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 346, 759
PagI TCATGA 1 cut(s) 792
PceI AGGCCT 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 873
PctI GAATGC 1 cut(s) 710
PfeI GAWTC 2 cut(s) 778, 796
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 2 cut(s) 184, 772
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
Ppu21I YACGTR 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 250
PspPPI RGGWCCY 1 cut(s) 250
PsuI RGATCY 1 cut(s) 668
RsaI GTAC 3 cut(s) 143, 211, 612
RsaNI GTAC 3 cut(s) 142, 210, 611
RseI CAYNNNNRTG 1 cut(s) 830
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 2 cut(s) 183, 771
Sau3AI GATC 2 cut(s) 505, 668
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 612
SchI GAGTC 1 cut(s) 862
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 4 cut(s) 99, 347, 639, 938
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SnaBI TACGTA 1 cut(s) 436
SpeI ACTAGT 1 cut(s) 598
Sse9I AATT 5 cut(s) 8, 36, 105, 330, 589
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 2 cut(s) 291, 770
SspMI CTAG 3 cut(s) 575, 599, 641
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 202, 844
TaiI ACGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 615, 633
TasI AATT 5 cut(s) 8, 36, 105, 330, 589
TatI WGTACW 2 cut(s) 141, 610
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 2 cut(s) 778, 796
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 2 cut(s) 346, 759
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 2 cut(s) 346, 759
TspDTI ATGAA 4 cut(s) 20, 274, 802, 809
TspRI CASTG 1 cut(s) 952
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 3 cut(s) 8, 36, 589
XcmI CCANNNNNNNNNTGG 2 cut(s) 423, 547
XspI CTAG 3 cut(s) 575, 599, 641
ZrmI AGTACT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.