Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002193

Physical Location & Seq

Genomic Coordinates Reverse (-)

2324780 .. 2328146

Gene Structure 3367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGAGACTGTATCAGCATTTCATGCTTTCCTCATTATTGAAATCATGTGTTTTTCGATTCACATAGTGTCATGTAATCACATATCCTTGAAAGGAAACTCGCCGAGCAACTTTCTCTTTGGAACTGCATCCTCTTCTTATCAGTTTGAAGGAGCTTTTCTGAATGATGGTAAAGGGCTCAACAACTGGGATGTCTTCACTCACAAGCCTGGTACTATCCTGGATGGAACTAATGGAGACACTGCTGTTGATCAGTACCATCTTTATCAGGAAGACTTGGGTCTCATGAATAACATTGGAGTCAACAGCTACCGTCTTTCTATATCATGGGCAAGAATTTTACCCACATTACTTAAGGGTGGTCAGGAAACTTGTGGTTCAATGTTCATACACAAGTATGACATGTATTTCCTTCCTCAACATATTTCGTGTCCTGGTGTAGGAATCCAGCCCTTTGTGACATTGACCCACTACGACATACCTCAGGAACTTGAAGACAGATATGGAGCTTGGCTAAGTTCCCTACTGCAGGAAGATTTTAGATATTATGCAAATATATGTTTCAAATTCTTTGGAGACAGAGTCAAGTACTGGTCCACTTTCAATGAGCCCAATGTTGTGGTCATTCGTGGATATAGGTCAGGGATTTACCCACCATCTCATTGCTCTCTCCCTTTCGGAAATTGTACTTCTGGAGATTCAGAAAGAGAGCCTTTCATTGCAGCTCATAACATCATTCTATCCCATGCAGCTGCTGTGAATATATACCGAACCAAATATCAGAAAAAACAAGGAGGTAGCATTGGGATGGTGATGAATGCTGTATGGTATGAACCCATCAGCAACTCTTTAGAAGACAGATTAGCAGCTGAGAGGGCTCAGTCTTTCTATATCAACTGGTTCTTAGACCCAATTCTCCATGGAAGATACCCTGCAGAAATGCATGAGCTTCTAGGAGCTGATTTGCCTGTATTTTCCAAATTTGATCTGGAGATGCTGAAGAATGGATTAGACTTCATCGGTATCAATCACTACACCAGTTTTTACTCAAAAGACTGTATGTTTTCTCCATGTGAACCAGGACCAGGAGCTTCAAGGACAGAGGGTTATGCTTTGAGAACCGCACAAAAAGATGGAGTCTACATTGGAGAACCAGTATGGTATGGTGTGGAGGAGAATCCAAATTCCACAAATGAAGAACTGTTCCATGATGTCAAGAGAGTGGAGTACTTGAGAAGTTACTTACAGGCACTAGCAGATACAATGAGAACTAAAGCAGCAGATGTAAGAGGGTACTTCGTGTGGTCATTGCTTGATGATTTCGAGTGGACAAGTGGATATACGGTCAAGTTTGGACTTCACCATGTTGATTATGGCACTCTCAAGAGAACTCCAAGACTCTCTGCATCTTGGTACAGACAATTTATTGCTAATAACACCCTGCAGATTTTAAGTGCCCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

488

Amino Acids

55.53

Weight (kDa)

5.71

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	34 - 352	8.6e-93	Glycosyl hydrolase family 1
Glyco_hydro_1	PF00232	389 - 479	5.8e-26	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21760 AT4G21760
fragaria_vesca	FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481 FvH4_3g02481
malus_domestica	MD05G1342500.v1.1 MD10G1316200.v1.1 MD10G1316300.v1.1 MD10G1316400.v1.1
prunus_persica	Prupe.4G024300_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1 Prupe.4G024400_v2.0.a1
pyrus_communis	pycom05g31180
rosa_chinensis	RchiOBHm_Chr5g0003741 RchiOBHm_Chr5g0003771 RchiOBHm_Chr5g0003781 RchiOBHm_Chr5g0003791
rosa_laevigata	RLG00000031172 RLG00000031174 RLG00000031175
rosa_multiflora	Rmu_sc0000500.1_g000007 Rmu_sc0013996.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072200 Rroxscaffold_1G00072210 Rroxscaffold_1G00072220
rosa_rugosa	Rorug04G0406600 Rorug04G0406700
rosa_samantha	Rh5AG033600 Rh5AG033800 Rh5AG033900 Rh5BG032000 Rh5BG032300 Rh5BG032400 Rh5CG036300
rosa_wichuraiana	Rw5G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1140
AciI	CCGC	1 cut(s)	1122
AcsI	RAATTY	4 cut(s)	336, 566, 980, 1183
AcuI	CTGAAG	1 cut(s)	1019
AdeI	CACNNNGTG	1 cut(s)	67
AfaI	GTAC	7 cut(s)	214, 257, 590, 688, 1229, 1295, 1415
AfiI	CCNNNNNNNGG	3 cut(s)	440, 529, 1085
AflII	CTTAAG	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	8 cut(s)	41, 91, 149, 381, 494, 565, 604, 1095
AjnI	CCWGG	6 cut(s)	208, 219, 433, 1078, 1084, 1458
AluBI	AGCT	9 cut(s)	155, 309, 509, 725, 752, 869, 949, 959, 1091
AluI	AGCT	9 cut(s)	155, 309, 509, 725, 752, 869, 949, 959, 1091
Alw26I	GTCTC	3 cut(s)	231, 287, 570
AlwNI	CAGNNNCTG	1 cut(s)	755
ApeKI	GCWGC	5 cut(s)	722, 749, 752, 866, 1277
ApoI	RAATTY	4 cut(s)	336, 566, 980, 1183
AspS9I	GGNCC	2 cut(s)	594, 1082
AsuHPI	GGTGA	2 cut(s)	823, 1352
AvaII	GGWCC	2 cut(s)	594, 1082
AxyI	CCTNAGG	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	1459
BanII	GRGCYC	3 cut(s)	180, 612, 880
BbsI	GAAGAC	4 cut(s)	187, 279, 501, 861
BbvI	GCAGC	5 cut(s)	734, 739, 761, 878, 1289
BccI	CCATC	7 cut(s)	161, 218, 267, 664, 802, 845, 1127
BciT130I	CCWGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	3 cut(s)	231, 287, 570
BfaI	CTAG	2 cut(s)	953, 1253
BfmI	CTRYAG	3 cut(s)	527, 933, 1442
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	5 cut(s)	723, 750, 753, 867, 1278
BlsI	GCNGC	5 cut(s)	724, 751, 754, 868, 1279
BmcAI	AGTACT	2 cut(s)	590, 1229
Bme1390I	CCNGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
Bme18I	GGWCC	2 cut(s)	594, 1082
BmgT120I	GGNCC	2 cut(s)	594, 1082
BmrFI	CCNGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	137, 984, 1415
BmuI	ACTGGG	1 cut(s)	196
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	4 cut(s)	187, 279, 501, 861
BpmI	CTGGAG	2 cut(s)	714, 1010
BpuEI	CTTGAG	2 cut(s)	1252, 1367
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	919, 1458
BsaXI	ACNNNNNCTCC	4 cut(s)	567, 597, 1140, 1170
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 529, 1085
Bse1I	ACTGG	5 cut(s)	191, 596, 902, 1038, 1154
Bse21I	CCTNAGG	1 cut(s)	483
Bse3DI	GCAATG	3 cut(s)	661, 717, 1307
BseBI	CCWGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
BseDI	CCNNGG	2 cut(s)	919, 1458
BseGI	GGATG	4 cut(s)	128, 196, 229, 813
BseLI	CCNNNNNNNGG	3 cut(s)	440, 529, 1085
BseMI	GCAATG	3 cut(s)	661, 717, 1307
BseMII	CTCAG	3 cut(s)	497, 861, 893
BseNI	ACTGG	5 cut(s)	191, 596, 902, 1038, 1154
BseRI	GAGGAG	1 cut(s)	1187
BseSI	GKGCMC	1 cut(s)	1459
BseXI	GCAGC	5 cut(s)	734, 739, 761, 878, 1289
BslI	CCNNNNNNNGG	3 cut(s)	440, 529, 1085
BsmAI	GTCTC	3 cut(s)	231, 287, 570
BsmI	GAATGC	1 cut(s)	823
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	4 cut(s)	180, 612, 880, 1459
Bsp143I	GATC	2 cut(s)	250, 985
Bsp19I	CCATGG	1 cut(s)	919
BspACI	CCGC	1 cut(s)	1122
BspCNI	CTCAG	3 cut(s)	496, 862, 892
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	3 cut(s)	531, 937, 1446
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	3 cut(s)	661, 717, 1307
BsrI	ACTGG	5 cut(s)	191, 596, 902, 1038, 1154
BssECI	CCNNGG	2 cut(s)	919, 1458
BssMI	GATC	2 cut(s)	250, 985
BssT1I	CCWWGG	1 cut(s)	919
Bst2UI	CCWGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
Bst4CI	ACNGT	5 cut(s)	10, 314, 1058, 1203, 1345
Bst6I	CTCTTC	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstDEI	CTNAG	5 cut(s)	483, 515, 870, 879, 904
BstDSI	CCRYGG	1 cut(s)	919
BstENI	CCTNNNNNAGG	2 cut(s)	438, 527
BstF5I	GGATG	4 cut(s)	128, 196, 229, 813
BstKTI	GATC	2 cut(s)	253, 988
BstMAI	GTCTC	3 cut(s)	231, 287, 570
BstMBI	GATC	2 cut(s)	250, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 875
BstNI	CCWGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
BstNSI	RCATGY	1 cut(s)	406
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSCI	CCNGG	6 cut(s)	208, 219, 433, 1078, 1084, 1458
BstSFI	CTRYAG	3 cut(s)	527, 933, 1442
BstSLI	GKGCMC	1 cut(s)	1459
BstV1I	GCAGC	5 cut(s)	734, 739, 761, 878, 1289
BstV2I	GAAGAC	4 cut(s)	187, 279, 501, 861
BstXI	CCANNNNNNTGG	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	919
BtsCI	GGATG	4 cut(s)	128, 196, 229, 813
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	594, 1082
Csp6I	GTAC	7 cut(s)	213, 256, 589, 687, 1228, 1294, 1414
CviQI	GTAC	7 cut(s)	213, 256, 589, 687, 1228, 1294, 1414
DdeI	CTNAG	5 cut(s)	483, 515, 870, 879, 904
DpnI	GATC	2 cut(s)	252, 987
DpnII	GATC	2 cut(s)	250, 985
DraIII	CACNNNGTG	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	919
Eco24I	GRGCYC	3 cut(s)	180, 612, 880
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	594, 1082
Eco57I	CTGAAG	1 cut(s)	1019
Eco81I	CCTNAGG	1 cut(s)	483
EcoNI	CCTNNNNNAGG	2 cut(s)	438, 527
EcoRII	CCWGG	6 cut(s)	208, 219, 433, 1078, 1084, 1458
EcoT14I	CCWWGG	1 cut(s)	919
EcoT22I	ATGCAT	1 cut(s)	945
EcoT38I	GRGCYC	3 cut(s)	180, 612, 880
ErhI	CCWWGG	1 cut(s)	919
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	5 cut(s)	723, 750, 753, 867, 1278
FokI	GGATG	4 cut(s)	115, 203, 236, 820
FriOI	GRGCYC	3 cut(s)	180, 612, 880
Fsp4HI	GCNGC	5 cut(s)	723, 750, 753, 867, 1278
FspBI	CTAG	2 cut(s)	953, 1253
GluI	GCNGC	5 cut(s)	723, 750, 753, 867, 1278
GsuI	CTGGAG	2 cut(s)	714, 1010
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	8 cut(s)	58, 300, 444, 582, 698, 1137, 1177, 1398
HphI	GGTGA	2 cut(s)	823, 1352
Hpy166II	GTNNAC	5 cut(s)	304, 597, 1076, 1141, 1329
Hpy188I	TCNGA	4 cut(s)	162, 680, 703, 783
Hpy188III	TCNNGA	8 cut(s)	269, 286, 365, 485, 693, 989, 1216, 1384
Hpy8I	GTNNAC	5 cut(s)	304, 597, 1076, 1141, 1329
HpyAV	CCTTC	2 cut(s)	143, 422
HpyCH4III	ACNGT	5 cut(s)	10, 314, 1058, 1203, 1345
HpyCH4V	TGCA	9 cut(s)	128, 529, 551, 722, 749, 935, 943, 1406, 1444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 875
HpyF3I	CTNAG	5 cut(s)	483, 515, 870, 879, 904
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	250, 985
LmnI	GCTCC	4 cut(s)	152, 506, 956, 1088
Lsp1109I	GCAGC	5 cut(s)	734, 739, 761, 878, 1289
LweI	GCATC	3 cut(s)	137, 984, 1415
MaeI	CTAG	2 cut(s)	953, 1253
MaeIII	GTNAC	2 cut(s)	457, 1238
MalI	GATC	2 cut(s)	252, 987
MboI	GATC	2 cut(s)	250, 985
MboII	GAAGA	9 cut(s)	126, 187, 284, 506, 545, 866, 936, 1012, 1208
MhlI	GDGCHC	4 cut(s)	180, 612, 880, 1459
MluCI	AATT	7 cut(s)	336, 566, 682, 912, 980, 1183, 1421
MlyI	GAGTC	4 cut(s)	309, 591, 1146, 1392
MnlI	CCTC	9 cut(s)	41, 142, 426, 492, 788, 867, 1096, 1165, 1283
Mph1103I	ATGCAT	1 cut(s)	945
MseI	TTAA	2 cut(s)	354, 1451
MslI	CAYNNNNRTG	2 cut(s)	396, 806
MspA1I	CMGCKG	2 cut(s)	752, 869
MspCI	CTTAAG	1 cut(s)	353
MspR9I	CCNGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
Mva1269I	GAATGC	1 cut(s)	823
MvaI	CCWGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
MwoI	GCNNNNNNNGC	2 cut(s)	23, 875
NcoI	CCATGG	1 cut(s)	919
NdeII	GATC	2 cut(s)	250, 985
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	945
NspI	RCATGY	1 cut(s)	406
PagI	TCATGA	1 cut(s)	285
PciI	ACATGT	1 cut(s)	402
PctI	GAATGC	1 cut(s)	823
PfeI	GAWTC	4 cut(s)	58, 444, 698, 1177
PflFI	GACNNNGTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	724, 751, 754, 868, 1279
PleI	GAGTC	4 cut(s)	308, 590, 1145, 1392
PpsI	GAGTC	4 cut(s)	308, 590, 1145, 1392
PscI	ACATGT	1 cut(s)	402
PshAI	GACNNNNGTC	1 cut(s)	279
Psp6I	CCWGG	6 cut(s)	208, 219, 433, 1078, 1084, 1458
PspGI	CCWGG	6 cut(s)	208, 219, 433, 1078, 1084, 1458
PspPI	GGNCC	2 cut(s)	594, 1082
PstI	CTGCAG	3 cut(s)	531, 937, 1446
PstNI	CAGNNNCTG	1 cut(s)	755
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	2 cut(s)	752, 869
RsaI	GTAC	7 cut(s)	214, 257, 590, 688, 1229, 1295, 1415
RsaNI	GTAC	7 cut(s)	213, 256, 589, 687, 1228, 1294, 1414
RseI	CAYNNNNRTG	2 cut(s)	396, 806
SaqAI	TTAA	2 cut(s)	354, 1451
SatI	GCNGC	5 cut(s)	723, 750, 753, 867, 1278
Sau3AI	GATC	2 cut(s)	250, 985
Sau96I	GGNCC	2 cut(s)	594, 1082
ScaI	AGTACT	2 cut(s)	590, 1229
SchI	GAGTC	4 cut(s)	309, 591, 1146, 1392
ScrFI	CCNGG	6 cut(s)	210, 221, 435, 1080, 1086, 1460
SduI	GDGCHC	4 cut(s)	180, 612, 880, 1459
SfaNI	GCATC	3 cut(s)	137, 984, 1415
SfcI	CTRYAG	3 cut(s)	527, 933, 1442
SinI	GGWCC	2 cut(s)	594, 1082
SmiMI	CAYNNNNRTG	2 cut(s)	396, 806
SmlI	CTYRAG	3 cut(s)	353, 1231, 1382
SmoI	CTYRAG	3 cut(s)	353, 1231, 1382
Sse9I	AATT	7 cut(s)	336, 566, 682, 912, 980, 1183, 1421
SsiI	CCGC	1 cut(s)	1122
SspMI	CTAG	2 cut(s)	953, 1253
StyD4I	CCNGG	6 cut(s)	208, 219, 433, 1078, 1084, 1458
StyI	CCWWGG	1 cut(s)	919
TaaI	ACNGT	5 cut(s)	10, 314, 1058, 1203, 1345
TaqI	TCGA	2 cut(s)	56, 1323
TasI	AATT	7 cut(s)	336, 566, 682, 912, 980, 1183, 1421
TatI	WGTACW	3 cut(s)	588, 686, 1227
TfiI	GAWTC	4 cut(s)	58, 444, 698, 1177
Tru1I	TTAA	2 cut(s)	354, 1451
Tru9I	TTAA	2 cut(s)	354, 1451
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	5 cut(s)	722, 749, 752, 866, 1277
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	8 cut(s)	11, 302, 376, 706, 830, 846, 1006, 1209
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	594, 1082
XagI	CCTNNNNNAGG	2 cut(s)	438, 527
XapI	RAATTY	4 cut(s)	336, 566, 980, 1183
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	985, 1370
XmiI	GTMKAC	1 cut(s)	1140
XspI	CTAG	2 cut(s)	953, 1253
ZrmI	AGTACT	2 cut(s)	590, 1229
Zsp2I	ATGCAT	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.