RchiOBHm_Chr3g0486581

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003704
Physical Location & Seq
Reverse (-)
33426882 .. 33427681
800 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGATCATCGACCTCGGCTCCGGCTCCACCGTCAAACACGTCGTGGATCTCTTGGGCGAGCTTTTACAATCGGGAAAAGTTCACAACATCATCGGAATTTTTGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATCGATGGTGCCGACGAGGTGGACCCCCACCTCAACCTAGTTAAAGGCTGCTGCGGGTACCTCTTGAGAGAGAGAATAGTGGAGGGCGCGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

4.72

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 35 - 90 2.1e-15 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 2 cut(s) 188, 237
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 234
AclWI GGATC 2 cut(s) 54, 160
AcsI RAATTY 2 cut(s) 96, 135
AdeI CACNNNGTG 1 cut(s) 43
AfaI GTAC 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 37
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AlwI GGATC 2 cut(s) 54, 160
ApeKI GCWGC 2 cut(s) 228, 231
ApoI RAATTY 2 cut(s) 96, 135
Asp718I GGTACC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 2 cut(s) 188, 237
BbvI GCAGC 2 cut(s) 215, 218
BccI CCATC 1 cut(s) 179
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 229, 232
BlsI GCNGC 2 cut(s) 230, 233
Bme18I GGWCC 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 5 cut(s) 19, 25, 190, 204, 239
BpuEI CTTGAG 1 cut(s) 265
Bsa29I ATCGAT 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 32, 254
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 215, 218
Bsh1236I CGCG 1 cut(s) 269
BshNI GGYRCC 2 cut(s) 188, 237
BshVI ATCGAT 1 cut(s) 183
BsiSI CCGG 1 cut(s) 21
Bsp143I GATC 4 cut(s) 3, 46, 165, 172
BspACI CCGC 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 5 cut(s) 19, 25, 190, 204, 239
BspPI GGATC 2 cut(s) 54, 160
BspT107I GGYRCC 2 cut(s) 188, 237
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 4 cut(s) 3, 46, 165, 172
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 4 cut(s) 6, 49, 168, 175
BstMBI GATC 4 cut(s) 3, 46, 165, 172
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 215, 218
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 183
BtrI CACGTC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 238
CviJI RGCY 4 cut(s) 18, 24, 61, 228
CviKI_1 RGCY 4 cut(s) 18, 24, 61, 228
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 131
DpnI GATC 4 cut(s) 5, 48, 167, 174
DpnII GATC 4 cut(s) 3, 46, 165, 172
DraIII CACNNNGTG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 135
FauI CCCGC 1 cut(s) 227
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 229, 232
Fsp4HI GCNGC 2 cut(s) 229, 232
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 268
GluI GCNGC 2 cut(s) 229, 232
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 269
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 82, 202
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 72, 244
Hpy8I GTNNAC 2 cut(s) 82, 202
Hpy99I CGWCG 2 cut(s) 44, 197
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 39
HspAI GCGC 1 cut(s) 267
KpnI GGTACC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 46, 165, 172
LmnI GCTCC 2 cut(s) 23, 29
LpnPI CCDG 1 cut(s) 34
Lsp1109I GCAGC 2 cut(s) 215, 218
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 39
MalI GATC 4 cut(s) 5, 48, 167, 174
MboI GATC 4 cut(s) 3, 46, 165, 172
MflI RGATCY 1 cut(s) 46
MluCI AATT 2 cut(s) 96, 135
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 23, 161, 179, 190, 221, 251, 256
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 269
NdeII GATC 4 cut(s) 3, 46, 165, 172
NlaIV GGNNCC 5 cut(s) 19, 25, 190, 204, 239
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PkrI GCNGC 2 cut(s) 230, 233
PspN4I GGNNCC 5 cut(s) 19, 25, 190, 204, 239
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 229, 232
Sau3AI GATC 4 cut(s) 3, 46, 165, 172
Sau96I GGNCC 1 cut(s) 202
SetI ASST 8 cut(s) 15, 42, 63, 153, 201, 213, 219, 243
SinI GGWCC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 2 cut(s) 96, 135
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 42
TaqI TCGA 4 cut(s) 9, 153, 171, 183
TasI AATT 2 cut(s) 96, 135
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 2 cut(s) 228, 231
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 2 cut(s) 96, 135
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.