Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000920.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

4397 .. 6541

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000920.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgggaaatcacctacaagctcagaagtcgtcaaactcgaggataatcaacaagcaccaagaacacatgacgattcatccaccatcaaagtcgtactcgccacgtgacaccaatcggcccaaatctgatcaagatcaagaatttgcaacccttgatcaaccctcttcaattctgacccaagacgagttgaagaaaatcgccgcctacaaggtcgtcgagtccggtgtgatctttggcctcggctccggctccaccgtcaaacatgtcgtggatcgcttgggcgagtttttacaatcgggaaaagttcacaacatcatcggaatttccgagaacacccaccaacaagtcatctctcttagaattctattatccaaccttgatgactacccgatcctcaatctcgctatcgatggtgccggcgaggtggactcccacctcaacctaatcaaaggcagctgcggccttgataataaggggaaggttttggaattgaaggaagagttggactctgaatttgttagtgtcctccagtccttggggttggatgtggagataagatcaaaagaatcaattgagcaaaactttgccctcagaagtcaaggccagatttttttctgttgggccggttcaagaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

5.89

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	535
AciI	CCGC	2 cut(s)	201, 459
AclWI	GGATC	2 cut(s)	279, 385
AcsI	RAATTY	4 cut(s)	140, 321, 360, 512
AcvI	CACGTG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	168, 190, 493, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	2 cut(s)	20, 456
AluI	AGCT	2 cut(s)	20, 456
AlwI	GGATC	2 cut(s)	279, 385
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	5 cut(s)	116, 235, 460, 601, 621
ApeKI	GCWGC	2 cut(s)	453, 456
ApoI	RAATTY	4 cut(s)	140, 321, 360, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspS9I	GGNCC	2 cut(s)	117, 621
AvaI	CYCGRG	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	413
BbrPI	CACGTG	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	443, 465
BccI	CCATC	2 cut(s)	91, 404
BclI	TGATCA	2 cut(s)	127, 154
BisI	GCNGC	4 cut(s)	201, 454, 457, 460
BlsI	GCNGC	4 cut(s)	202, 455, 458, 461
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	117, 621
BmiI	GGNNCC	3 cut(s)	244, 250, 415
BplI	GAGNNNNNCTC	4 cut(s)	413, 445, 491, 523
BpmI	CTGGAG	1 cut(s)	512
Bsa29I	ATCGAT	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	238, 534
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse118I	RCCGGY	2 cut(s)	416, 623
Bse1I	ACTGG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	238, 534
BseGI	GGATG	2 cut(s)	76, 550
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	35, 604
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	2 cut(s)	443, 465
BshFI	GGCC	5 cut(s)	118, 237, 462, 603, 623
BshNI	GGYRCC	1 cut(s)	413
BshVI	ATCGAT	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	4 cut(s)	222, 246, 417, 624
BslI	CCNNNNNNNGG	1 cut(s)	535
BsnI	GGCC	5 cut(s)	118, 237, 462, 603, 623
BsoBI	CYCGRG	1 cut(s)	37
Bsp143I	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
BspACI	CCGC	2 cut(s)	201, 459
BspANI	GGCC	5 cut(s)	118, 237, 462, 603, 623
BspCNI	CTCAG	2 cut(s)	34, 603
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	244, 250, 415
BspPI	GGATC	2 cut(s)	279, 385
BspT107I	GGYRCC	1 cut(s)	413
BsrFI	RCCGGY	2 cut(s)	416, 623
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	2 cut(s)	416, 623
BssECI	CCNNGG	2 cut(s)	238, 534
BssMI	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
BssT1I	CCWWGG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	2 cut(s)	169, 492
BstBAI	YACGTR	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	21, 356, 590
BstF5I	GGATG	2 cut(s)	76, 550
BstKTI	GATC	7 cut(s)	130, 136, 157, 231, 274, 393, 560
BstMBI	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	443, 465
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	118, 237, 462, 603, 623
BsuTUI	ATCGAT	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	76, 550
Cac8I	GCNNGC	1 cut(s)	418
Cfr10I	RCCGGY	2 cut(s)	416, 623
Cfr13I	GGNCC	2 cut(s)	117, 621
ClaI	ATCGAT	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	3 cut(s)	67, 263, 636
CviJI	RGCY	9 cut(s)	20, 118, 237, 243, 249, 456, 462, 603, 623
CviKI_1	RGCY	9 cut(s)	20, 118, 237, 243, 249, 456, 462, 603, 623
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	21, 356, 590
DpnI	GATC	7 cut(s)	129, 135, 156, 230, 273, 392, 559
DpnII	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
Eam1104I	CTCTTC	2 cut(s)	169, 492
EarI	CTCTTC	2 cut(s)	169, 492
Eco130I	CCWWGG	1 cut(s)	534
Eco72I	CACGTG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	3 cut(s)	70, 266, 639
FaiI	YATR	3 cut(s)	68, 264, 637
FatI	CATG	3 cut(s)	66, 262, 635
FbaI	TGATCA	2 cut(s)	127, 154
Fnu4HI	GCNGC	4 cut(s)	201, 454, 457, 460
FokI	GGATG	2 cut(s)	63, 557
Fsp4HI	GCNGC	4 cut(s)	201, 454, 457, 460
GluI	GCNGC	4 cut(s)	201, 454, 457, 460
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	5 cut(s)	118, 237, 462, 603, 623
HapII	CCGG	4 cut(s)	222, 246, 417, 624
Hin1II	CATG	3 cut(s)	70, 266, 639
HinfI	GANTC	5 cut(s)	73, 218, 428, 506, 566
HpaII	CCGG	4 cut(s)	222, 246, 417, 624
Hpy166II	GTNNAC	2 cut(s)	307, 427
Hpy188I	TCNGA	7 cut(s)	24, 127, 174, 320, 328, 511, 593
Hpy188III	TCNNGA	4 cut(s)	131, 137, 297, 630
Hpy8I	GTNNAC	2 cut(s)	307, 427
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	472, 487
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	3 cut(s)	21, 356, 590
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	70, 266, 639
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	2 cut(s)	127, 154
Kzo9I	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
LmnI	GCTCC	2 cut(s)	248, 254
LpnPI	CCDG	5 cut(s)	235, 259, 430, 542, 617
Lsp1109I	GCAGC	2 cut(s)	443, 465
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	7 cut(s)	129, 135, 156, 230, 273, 392, 559
MboI	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
MboII	GAAGA	3 cut(s)	156, 202, 509
MfeI	CAATTG	1 cut(s)	570
MluCI	AATT	7 cut(s)	140, 168, 321, 360, 488, 512, 570
MlyI	GAGTC	3 cut(s)	227, 422, 500
MmeI	TCCRAC	3 cut(s)	396, 483, 522
MnlI	CCTC	8 cut(s)	33, 172, 248, 404, 415, 446, 536, 599
MroNI	GCCGGC	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	4 cut(s)	222, 246, 417, 624
MunI	CAATTG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	459
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	3 cut(s)	70, 266, 639
NlaIV	GGNNCC	3 cut(s)	244, 250, 415
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	37
PciI	ACATGT	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 324
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	73, 566
PflMI	CCANNNNNTGG	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	202, 455, 458, 461
PleI	GAGTC	3 cut(s)	226, 422, 500
PmaCI	CACGTG	1 cut(s)	104
PmlI	CACGTG	1 cut(s)	104
PpsI	GAGTC	3 cut(s)	226, 422, 500
Ppu21I	YACGTR	1 cut(s)	104
PscI	ACATGT	1 cut(s)	262
PspCI	CACGTG	1 cut(s)	104
PspN4I	GGNNCC	3 cut(s)	244, 250, 415
PspPI	GGNCC	2 cut(s)	117, 621
PspXI	VCTCGAGB	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SatI	GCNGC	4 cut(s)	201, 454, 457, 460
Sau3AI	GATC	7 cut(s)	127, 133, 154, 228, 271, 390, 557
Sau96I	GGNCC	2 cut(s)	117, 621
SchI	GAGTC	3 cut(s)	227, 422, 500
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	7 cut(s)	140, 168, 321, 360, 488, 512, 570
SsiI	CCGC	2 cut(s)	201, 459
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	3 cut(s)	38, 216, 408
TasI	AATT	7 cut(s)	140, 168, 321, 360, 488, 512, 570
TauI	GCSGC	2 cut(s)	203, 462
TfiI	GAWTC	2 cut(s)	73, 566
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	453, 456
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	535
XapI	RAATTY	4 cut(s)	140, 321, 360, 512
XceI	RCATGY	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.