Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005532.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

23795 .. 25513

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005532.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgtcggcagatctgccagttcatcagacgacggagtcagctgcaaaccgtcgacccaatgatcggcccttttcttgcctcctctctttcccaatttctgttttcaactcttcaattctgacccaagacgaattgaagaaaatcgccacctacaaggtggtcgagtccagcatgatcttcggcctcggctctggctccaccgtcaaacacgccgtggatcgcttgggcgagcttttacaatcgggaaaagttcacagcatcatcggaatttctgagaacacctaccaacaagtcatctctcttagaattccattatccaacctcgatgactacccgatcctcgatctcgctattgacggtgccgacgaggtggacccccacctcaacctagtcaaaggccgctgcaggtacctcttgagagagaaaatggtggagggcgcgttagaaattcgtgctaggttcaagaacatgaacgaatcaaggattgctgaaattttgttcttttgctttttagctggccttgataatttggatgatggcctgaaggggaatgttttggaattgaaggaagagttggactctgaatttgttagtgtcctcaagtccttggggttggatgtggagatgagatcaaaagaattcattgagcaaactttgccctcagaagtcaaggccagatttttttctgctgggttcaagaacatgaatgaatcaacattgttgcgattctttttttgctggtttcaagaacatgaagatgaaaaattgttgggttcaagtgttaccaacatgaatctgctgatgtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

269

Amino Acids

30.41

Weight (kDa)

5.1

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
Acc36I	ACCTGC	1 cut(s)	396
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	2 cut(s)	359, 408
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	440
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	2 cut(s)	225, 331
AcsI	RAATTY	6 cut(s)	267, 306, 447, 492, 584, 638
AcuI	CTGAAG	1 cut(s)	563
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	8 cut(s)	106, 114, 136, 463, 565, 697, 746, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	3 cut(s)	41, 232, 515
AluI	AGCT	3 cut(s)	41, 232, 515
AlwI	GGATC	2 cut(s)	225, 331
AoxI	GGCC	6 cut(s)	65, 181, 397, 517, 538, 672
ApeKI	GCWGC	2 cut(s)	41, 402
ApoI	RAATTY	6 cut(s)	267, 306, 447, 492, 584, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	66, 373
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	2 cut(s)	359, 408
BbvI	GCAGC	2 cut(s)	28, 389
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BfaI	CTAG	2 cut(s)	389, 456
BfmI	CTRYAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	396
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	3 cut(s)	42, 400, 403
BlsI	GCNGC	3 cut(s)	43, 401, 404
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	66, 373
BmiI	GGNNCC	4 cut(s)	196, 361, 375, 410
BmsI	GCATC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpuEI	CTTGAG	2 cut(s)	436, 584
BsaJI	CCNNGG	3 cut(s)	184, 213, 606
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	184, 213, 606
BseGI	GGATG	2 cut(s)	538, 622
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	264, 675
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	28, 389
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	6 cut(s)	67, 183, 399, 519, 540, 674
BshNI	GGYRCC	2 cut(s)	359, 408
BslI	CCNNNNNNNGG	1 cut(s)	63
BsnI	GGCC	6 cut(s)	67, 183, 399, 519, 540, 674
Bsp143I	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	6 cut(s)	67, 183, 399, 519, 540, 674
BspCNI	CTCAG	2 cut(s)	265, 674
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	4 cut(s)	196, 361, 375, 410
BspMAI	CTGCAG	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	225, 331
BspT107I	GGYRCC	2 cut(s)	359, 408
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	184, 213, 606
BssMI	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
BssT1I	CCWWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	50, 202, 359
Bst6I	CTCTTC	2 cut(s)	115, 564
BstAPI	GCANNNNNTGC	1 cut(s)	655
BstC8I	GCNNGC	2 cut(s)	230, 517
BstDEI	CTNAG	3 cut(s)	273, 302, 661
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	538, 622
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	7 cut(s)	13, 64, 177, 220, 339, 346, 632
BstMBI	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	655
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	2 cut(s)	28, 389
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	6 cut(s)	67, 183, 399, 519, 540, 674
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	538, 622
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	230, 517
CfoI	GCGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	66, 373
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	5 cut(s)	172, 469, 703, 752, 790
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	273, 302, 661
DpnI	GATC	7 cut(s)	12, 63, 176, 219, 338, 345, 631
DpnII	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
DraIII	CACNNNGTG	1 cut(s)	214
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	115, 564
EarI	CTCTTC	2 cut(s)	115, 564
Eco130I	CCWWGG	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	563
EcoRI	GAATTC	2 cut(s)	306, 638
EcoT14I	CCWWGG	1 cut(s)	606
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	5 cut(s)	175, 472, 706, 755, 793
FaiI	YATR	5 cut(s)	173, 470, 704, 753, 791
FatI	CATG	5 cut(s)	171, 468, 702, 751, 789
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	42, 400, 403
FokI	GGATG	2 cut(s)	545, 629
Fsp4HI	GCNGC	3 cut(s)	42, 400, 403
FspBI	CTAG	2 cut(s)	389, 456
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	3 cut(s)	42, 400, 403
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	6 cut(s)	67, 183, 399, 519, 540, 674
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	5 cut(s)	175, 472, 706, 755, 793
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	7 cut(s)	35, 164, 476, 578, 710, 726, 793
Hpy166II	GTNNAC	3 cut(s)	53, 253, 373
Hpy188I	TCNGA	6 cut(s)	27, 120, 266, 274, 583, 664
Hpy188III	TCNNGA	5 cut(s)	243, 415, 463, 697, 746
Hpy8I	GTNNAC	3 cut(s)	53, 253, 373
Hpy99I	CGWCG	3 cut(s)	34, 54, 368
HpyAV	CCTTC	2 cut(s)	538, 559
HpyCH4III	ACNGT	3 cut(s)	50, 202, 359
HpyCH4V	TGCA	2 cut(s)	44, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	655
HpyF3I	CTNAG	3 cut(s)	273, 302, 661
Hsp92II	CATG	5 cut(s)	175, 472, 706, 755, 793
HspAI	GCGC	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	9 cut(s)	30, 177, 181, 391, 501, 554, 675, 688, 724
Lsp1109I	GCAGC	2 cut(s)	28, 389
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	389, 456
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	7 cut(s)	12, 63, 176, 219, 338, 345, 631
MboI	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
MboII	GAAGA	5 cut(s)	102, 148, 169, 581, 767
MflI	RGATCY	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	44, 173, 572
MmeI	TCCRAC	3 cut(s)	342, 555, 594
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	2 cut(s)	41, 402
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	655
NdeII	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
NlaIII	CATG	5 cut(s)	175, 472, 706, 755, 793
NlaIV	GGNNCC	4 cut(s)	196, 361, 375, 410
NmeAIII	GCCGAG	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	476, 710, 726, 793
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	43, 401, 404
PleI	GAGTC	3 cut(s)	43, 172, 572
PpsI	GAGTC	3 cut(s)	43, 172, 572
PspFI	CCCAGC	1 cut(s)	689
PspN4I	GGNNCC	4 cut(s)	196, 361, 375, 410
PspPI	GGNCC	2 cut(s)	66, 373
PstI	CTGCAG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	10
PsyI	GACNNNGTC	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	756
SalI	GTCGAC	1 cut(s)	51
SatI	GCNGC	3 cut(s)	42, 400, 403
Sau3AI	GATC	7 cut(s)	10, 61, 174, 217, 336, 343, 629
Sau96I	GGNCC	2 cut(s)	66, 373
SchI	GAGTC	3 cut(s)	44, 173, 572
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	2 cut(s)	415, 599
SmoI	CTYRAG	2 cut(s)	415, 599
SsiI	CCGC	1 cut(s)	400
SspMI	CTAG	2 cut(s)	389, 456
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	50, 202, 359
TaqI	TCGA	4 cut(s)	52, 162, 324, 342
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	4 cut(s)	476, 710, 726, 793
TseI	GCWGC	2 cut(s)	41, 402
TspDTI	ATGAA	8 cut(s)	11, 485, 631, 719, 723, 768, 774, 806
TspGWI	ACGGA	1 cut(s)	47
Tth111I	GACNNNGTC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	6 cut(s)	267, 306, 447, 492, 584, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	389, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.