Rh6AG276800

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003704
Physical Location & Seq
Forward (+)
47080552 .. 47082493
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG276800.1

Sequence Viewer

Length: 363 bp
ATGGAGATATTGAGGGTTGCCAAGGCGACTAGCTCTGCCACATTAATGCCAACAATCTTGTACCAACTTCATTCCACAAACTCTTCAATTTTGACCCAAGACAAGTTGAAGAAAATCGCCTCCTACAAGGTTGTCGAGTCCGGCATGATCGTCGACCTCAGCTCCGGCTCCACCGTCAAACACACCGTGGATCGCTTGGGCGAGCTTTTACAACGGGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATCGATGGTGCCGACGAGGTGGACCCCAACTCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

120

Amino Acids

13.1

Weight (kDa)

5.71

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 79 - 118 3e-08 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 153
AclWI GGATC 2 cut(s) 198, 304
AcsI RAATTY 2 cut(s) 240, 279
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 2 cut(s) 87, 109
AluBI AGCT 3 cut(s) 33, 162, 205
AluI AGCT 3 cut(s) 33, 162, 205
AlwI GGATC 2 cut(s) 198, 304
ApoI RAATTY 2 cut(s) 240, 279
AseI ATTAAT 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 346
AvaII GGWCC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BfaI CTAG 2 cut(s) 30, 361
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 3 cut(s) 169, 334, 348
Bpu10I CCTNAGC 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 21, 186
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 21, 186
BseMII CTCAG 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 332
BshVI ATCGAT 1 cut(s) 327
BsiSI CCGG 2 cut(s) 141, 165
Bsp143I GATC 4 cut(s) 147, 190, 309, 316
BspCNI CTCAG 1 cut(s) 171
BspDI ATCGAT 1 cut(s) 327
BspLI GGNNCC 3 cut(s) 169, 334, 348
BspPI GGATC 2 cut(s) 198, 304
BspT107I GGYRCC 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 21, 186
BssMI GATC 4 cut(s) 147, 190, 309, 316
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 175, 187
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 158, 275
BstDSI CCRYGG 1 cut(s) 186
BstKTI GATC 4 cut(s) 150, 193, 312, 319
BstMBI GATC 4 cut(s) 147, 190, 309, 316
Bsu15I ATCGAT 1 cut(s) 327
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 327
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 145
CviJI RGCY 4 cut(s) 33, 162, 168, 205
CviKI_1 RGCY 4 cut(s) 33, 162, 168, 205
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 158, 275
DpnI GATC 4 cut(s) 149, 192, 311, 318
DpnII GATC 4 cut(s) 147, 190, 309, 316
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 148
FaiI YATR 1 cut(s) 146
FatI CATG 1 cut(s) 144
FblI GTMKAC 1 cut(s) 153
FspBI CTAG 2 cut(s) 30, 361
HapII CCGG 2 cut(s) 141, 165
Hin1II CATG 1 cut(s) 148
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 141, 165
Hpy166II GTNNAC 3 cut(s) 154, 226, 346
Hpy188I TCNGA 2 cut(s) 239, 247
Hpy8I GTNNAC 3 cut(s) 154, 226, 346
Hpy99I CGWCG 2 cut(s) 155, 341
HpyCH4III ACNGT 2 cut(s) 175, 187
HpyF3I CTNAG 2 cut(s) 158, 275
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 4 cut(s) 147, 190, 309, 316
LmnI GCTCC 2 cut(s) 167, 173
LpnPI CCDG 2 cut(s) 154, 178
MaeI CTAG 2 cut(s) 30, 361
MalI GATC 4 cut(s) 149, 192, 311, 318
MboI GATC 4 cut(s) 147, 190, 309, 316
MboII GAAGA 2 cut(s) 75, 121
MluCI AATT 3 cut(s) 87, 240, 279
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 6 cut(s) 6, 130, 167, 305, 323, 334
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 2 cut(s) 141, 165
NdeII GATC 4 cut(s) 147, 190, 309, 316
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 3 cut(s) 169, 334, 348
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 333
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 169, 334, 348
PspPI GGNCC 1 cut(s) 346
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 44
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 4 cut(s) 147, 190, 309, 316
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 146
SetI ASST 8 cut(s) 35, 132, 159, 164, 207, 297, 345, 362
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 3 cut(s) 87, 240, 279
SspMI CTAG 2 cut(s) 30, 361
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 175, 187
TaqI TCGA 5 cut(s) 135, 153, 297, 315, 327
TasI AATT 3 cut(s) 87, 240, 279
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 346
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 2 cut(s) 240, 279
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 2 cut(s) 30, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.