Rh6BG324700

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003704
Physical Location & Seq
Reverse (-)
55629785 .. 55630338
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG324700.1

Sequence Viewer

Length: 357 bp
ATGACCCAAGACGAGTTGAAGAAAATCGCCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTCGGTCTCGGCTCCGGCTCCACCGTCAAACACACCGTGGATCGCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAATCATCTCTCTTAGAATTTCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATCGACGGTGCCGACGAAGTGGATCCCCACCTCAACCTAGTCAAAGGCCGCTGCGGCCTTGATAATTTGGATGATAGCCTGAAAGGGGAAGGTTTTGGAATTGAAGGAAGAGTTGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

4.89

Isoelectric Point (pI)

19.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 49 - 97 3.3e-12 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 3 cut(s) 30, 283, 288
AclWI GGATC 4 cut(s) 108, 214, 251, 264
AcsI RAATTY 2 cut(s) 150, 189
AdeI CACNNNGTG 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 319
AgsI TTSAA 2 cut(s) 19, 338
AjuI GAANNNNNNNTTGG 1 cut(s) 330
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 4 cut(s) 108, 214, 251, 264
AoxI GGCC 2 cut(s) 280, 289
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 150, 189
AsuC2I CCSGG 1 cut(s) 126
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 288
BisI GCNGC 4 cut(s) 30, 283, 286, 289
BlsI GCNGC 4 cut(s) 31, 284, 287, 290
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 4 cut(s) 73, 79, 244, 258
BmrFI CCNGG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 2 cut(s) 282, 291
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 3 cut(s) 51, 75, 125
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 282, 291
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 5 cut(s) 57, 100, 219, 226, 256
BspACI CCGC 3 cut(s) 30, 283, 288
BspANI GGCC 2 cut(s) 282, 291
BspLI GGNNCC 4 cut(s) 73, 79, 244, 258
BspPI GGATC 4 cut(s) 108, 214, 251, 264
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 5 cut(s) 57, 100, 219, 226, 256
Bst4CI ACNGT 3 cut(s) 85, 97, 242
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 5 cut(s) 60, 103, 222, 229, 259
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 5 cut(s) 57, 100, 219, 226, 256
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 282, 291
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 113
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 72, 78, 115, 282, 291, 312
CviKI_1 RGCY 6 cut(s) 72, 78, 115, 282, 291, 312
DdeI CTNAG 1 cut(s) 185
DpnI GATC 5 cut(s) 59, 102, 221, 228, 258
DpnII GATC 5 cut(s) 57, 100, 219, 226, 256
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 71
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 30, 283, 286, 289
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 4 cut(s) 30, 283, 286, 289
FspBI CTAG 1 cut(s) 272
GluI GCNGC 4 cut(s) 30, 283, 286, 289
HaeIII GGCC 2 cut(s) 282, 291
HapII CCGG 3 cut(s) 51, 75, 125
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 47, 351
HpaII CCGG 3 cut(s) 51, 75, 125
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 149, 157, 356
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 3 cut(s) 47, 242, 251
HpyAV CCTTC 2 cut(s) 317, 332
HpyCH4III ACNGT 3 cut(s) 85, 97, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 5 cut(s) 57, 100, 219, 226, 256
LmnI GCTCC 2 cut(s) 77, 83
LpnPI CCDG 4 cut(s) 64, 88, 138, 326
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 1 cut(s) 272
MalI GATC 5 cut(s) 59, 102, 221, 228, 258
MboI GATC 5 cut(s) 57, 100, 219, 226, 256
MboII GAAGA 3 cut(s) 31, 52, 354
MflI RGATCY 1 cut(s) 256
MluCI AATT 4 cut(s) 150, 189, 298, 333
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 225, 328
MnlI CCTC 3 cut(s) 215, 233, 275
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 3 cut(s) 51, 75, 125
MspR9I CCNGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 126
NdeII GATC 5 cut(s) 57, 100, 219, 226, 256
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 4 cut(s) 73, 79, 244, 258
NmeAIII GCCGAG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 243, 246
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 4 cut(s) 31, 284, 287, 290
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PspN4I GGNNCC 4 cut(s) 73, 79, 244, 258
PsuI RGATCY 1 cut(s) 256
SatI GCNGC 4 cut(s) 30, 283, 286, 289
Sau3AI GATC 5 cut(s) 57, 100, 219, 226, 256
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 126
SetI ASST 6 cut(s) 42, 117, 207, 267, 273, 328
SfiI GGCCNNNNNGGCC 1 cut(s) 288
Sse9I AATT 4 cut(s) 150, 189, 298, 333
SsiI CCGC 3 cut(s) 30, 283, 288
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 3 cut(s) 85, 97, 242
TaqI TCGA 4 cut(s) 45, 207, 225, 237
TaqII GACCGA 1 cut(s) 53
TasI AATT 4 cut(s) 150, 189, 298, 333
TauI GCSGC 3 cut(s) 32, 285, 291
TfiI GAWTC 1 cut(s) 351
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 183
XapI RAATTY 2 cut(s) 150, 189
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.