RchiOBHm_Chr4g0414301

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003704
Physical Location & Seq
Reverse (-)
38775778 .. 38776176
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38473

Sequence Viewer

Length: 399 bp
ATGGATCAAACTAGTAAGACCCTTTTCTTGCCTCCTCTCTTTACCAATTTCTGTTTCAGCTCTTCAATTCTGACCCAAGACGAGTTGAAGAAAATCACCGCCTACAAGATCGTCGAGTCCGTCATGATCTTTGTCCTCGGCTCCGGCTCCACCGTCAAACACGCCGTGGATCGCTTGGGTGAGCTTTTACAACCGGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAGTCACCTCTCTTAGAATTCTATTATCCAACCTCGATGGCTACCCAATCCTCAATCTCGCTATCGACGGTGCCGACGAGGTGGACCCCCACCTCAACCTAGTCAAAGACCGTTGCGGGTACCTCTTGAGAGAGAAAATGGTGGAGGGTGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

132

Amino Acids

14.6

Weight (kDa)

5.74

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 72 - 131 1.8e-13 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 2 cut(s) 311, 360
AciI CCGC 2 cut(s) 99, 357
AclWI GGATC 2 cut(s) 12, 177
AcsI RAATTY 2 cut(s) 219, 258
AdeI CACNNNGTG 1 cut(s) 166
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 2 cut(s) 66, 88
AhlI ACTAGT 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 2 cut(s) 60, 184
AluI AGCT 2 cut(s) 60, 184
AlwI GGATC 2 cut(s) 12, 177
ApoI RAATTY 2 cut(s) 219, 258
Asp718I GGTACC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 88, 191, 238
AvaII GGWCC 1 cut(s) 325
BanI GGYRCC 2 cut(s) 311, 360
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 149
BcnI CCSGG 1 cut(s) 195
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 341
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 5 cut(s) 142, 148, 313, 327, 362
BmrFI CCNGG 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 136, 165
BseDI CCNNGG 2 cut(s) 136, 165
BseRI GAGGAG 1 cut(s) 24
BshNI GGYRCC 2 cut(s) 311, 360
BsiSI CCGG 2 cut(s) 144, 194
Bsp143I GATC 4 cut(s) 4, 108, 126, 169
BspACI CCGC 2 cut(s) 99, 357
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 5 cut(s) 142, 148, 313, 327, 362
BspPI GGATC 2 cut(s) 12, 177
BspQI GCTCTTC 1 cut(s) 67
BspT107I GGYRCC 2 cut(s) 311, 360
BssECI CCNNGG 2 cut(s) 136, 165
BssMI GATC 4 cut(s) 4, 108, 126, 169
Bst4CI ACNGT 3 cut(s) 154, 311, 353
Bst6I CTCTTC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 165
BstKTI GATC 4 cut(s) 7, 111, 129, 172
BstMBI GATC 4 cut(s) 4, 108, 126, 169
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 165
CciI TCATGA 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 361
CviAII CATG 2 cut(s) 124, 393
CviJI RGCY 5 cut(s) 60, 141, 147, 184, 282
CviKI_1 RGCY 5 cut(s) 60, 141, 147, 184, 282
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 254
DpnI GATC 4 cut(s) 6, 110, 128, 171
DpnII GATC 4 cut(s) 4, 108, 126, 169
DraIII CACNNNGTG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 258
FaeI CATG 2 cut(s) 127, 396
FaiI YATR 2 cut(s) 125, 394
FatI CATG 2 cut(s) 123, 392
FauI CCCGC 1 cut(s) 350
FspBI CTAG 2 cut(s) 12, 341
HapII CCGG 2 cut(s) 144, 194
Hin1II CATG 2 cut(s) 127, 396
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 144, 194
HphI GGTGA 3 cut(s) 88, 191, 238
Hpy166II GTNNAC 2 cut(s) 205, 325
Hpy188I TCNGA 3 cut(s) 72, 218, 226
Hpy188III TCNNGA 2 cut(s) 124, 367
Hpy8I GTNNAC 2 cut(s) 205, 325
Hpy99I CGWCG 3 cut(s) 116, 311, 320
HpyCH4III ACNGT 3 cut(s) 154, 311, 353
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 2 cut(s) 127, 396
KpnI GGTACC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 4, 108, 126, 169
LguI GCTCTTC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 146, 152
LpnPI CCDG 2 cut(s) 157, 207
MaeI CTAG 2 cut(s) 12, 341
MaeIII GTNAC 1 cut(s) 244
MalI GATC 4 cut(s) 6, 110, 128, 171
MboI GATC 4 cut(s) 4, 108, 126, 169
MboII GAAGA 2 cut(s) 54, 100
MluCI AATT 4 cut(s) 46, 66, 219, 258
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 294
MspI CCGG 2 cut(s) 144, 194
MspR9I CCNGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 195
NdeII GATC 4 cut(s) 4, 108, 126, 169
NlaIII CATG 2 cut(s) 127, 396
NlaIV GGNNCC 5 cut(s) 142, 148, 313, 327, 362
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 396
PagI TCATGA 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 67
PcsI WCGNNNNNNNCGW 4 cut(s) 117, 222, 312, 315
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 5 cut(s) 142, 148, 313, 327, 362
PspPI GGNCC 1 cut(s) 325
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 67
Sau3AI GATC 4 cut(s) 4, 108, 126, 169
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 195
SetI ASST 8 cut(s) 62, 186, 251, 276, 324, 336, 342, 366
SinI GGWCC 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 46, 66, 219, 258
SsiI CCGC 2 cut(s) 99, 357
SspMI CTAG 2 cut(s) 12, 341
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 3 cut(s) 154, 311, 353
TaqI TCGA 3 cut(s) 114, 276, 306
TasI AATT 4 cut(s) 46, 66, 219, 258
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 219, 258
XceI RCATGY 1 cut(s) 396
XspI CTAG 2 cut(s) 12, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.