Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Forward (+)

14400664 .. 14402088

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027729

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCATTCAGGAAGAGTCGAGAGGCGGCTCGCGGTGGATCGGTGCAAGGATCCAAATGATATGGCGAAGCTGCCTCAGATGAGATCAATCATCGAGTTGAAGAAAATCGCCGCCTACAAGGTCGTCAAGTCTGACATGATCTTCGAGCTCAGCTCCGGTTCCACCGTCAAGTATCTCTTGGGCGAGCTTTTACAACCGGGAAAAGTGGACCCCCACCTCAACCTAGTCAAAGGCCGCTGCAGGTACCTCTTGAGAGAGAAAATGGTGGAGGGCGCATTAGATCTCGAATGTTTGTTTTTGTGTCTAACCTTGATGTTGGGGGTGTCTAGCCTTGATAATTTGGATGATAGCCTGATGGGGAATGTTTTGGAATTGAAGGAAGAGTTGGACTCTGAATTTGTTAGTGTCCTCAAGTCCTTGGGGTTGGGTGTGGAGATAAGATCAAAAGAATTCATTGAGCAAACTTTGCCCTCAACAGTCAAGGCCAGATTTTTTTCTGCTGGGTTCAAGAACATGAATGAATCAACATTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

ACCA

Protein Analysis

179

Amino Acids

20.0

Weight (kDa)

6.75

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AccII	CGCG	1 cut(s)	32
AciI	CCGC	4 cut(s)	25, 32, 111, 235
AclWI	GGATC	3 cut(s)	44, 45, 57
AcsI	RAATTY	2 cut(s)	395, 449
AfaI	GTAC	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	100, 376, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	4 cut(s)	70, 148, 153, 187
AluI	AGCT	4 cut(s)	70, 148, 153, 187
Alw21I	GWGCWC	1 cut(s)	150
AlwI	GGATC	3 cut(s)	44, 45, 57
AoxI	GGCC	2 cut(s)	232, 483
ApeKI	GCWGC	2 cut(s)	70, 237
ApoI	RAATTY	2 cut(s)	395, 449
ArsI	GACNNNNNNTTYG	4 cut(s)	125, 157, 380, 412
Asp718I	GGTACC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	57, 224
BccI	CCATC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	2 cut(s)	224, 327
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	231
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	5 cut(s)	26, 71, 111, 235, 238
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	5 cut(s)	27, 72, 112, 236, 239
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	4 cut(s)	51, 160, 210, 245
BmrFI	CCNGG	1 cut(s)	198
BplI	GAGNNNNNCTC	4 cut(s)	137, 169, 374, 406
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	271, 395
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	89, 163
BseXI	GCAGC	2 cut(s)	57, 224
BseYI	CCCAGC	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	234, 485
BshNI	GGYRCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	156, 197
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	234, 485
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	4 cut(s)	25, 32, 111, 235
BspANI	GGCC	2 cut(s)	234, 485
BspCNI	CTCAG	2 cut(s)	88, 162
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	51, 160, 210, 245
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	231
BspPI	GGATC	3 cut(s)	44, 45, 57
BspT107I	GGYRCC	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	166, 478
Bst6I	CTCTTC	2 cut(s)	7, 375
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	30, 185
BstDEI	CTNAG	2 cut(s)	75, 149
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	6 cut(s)	40, 52, 86, 141, 283, 443
BstMBI	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	57, 224
BstX2I	RGATCY	2 cut(s)	49, 280
BstYI	RGATCY	2 cut(s)	49, 280
BsuRI	GGCC	2 cut(s)	234, 485
BtsCI	GGATG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	30, 185
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	136, 514
CviJI	RGCY	9 cut(s)	28, 70, 148, 153, 187, 234, 330, 351, 485
CviKI_1	RGCY	9 cut(s)	28, 70, 148, 153, 187, 234, 330, 351, 485
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	75, 149
DpnI	GATC	6 cut(s)	39, 51, 85, 140, 282, 442
DpnII	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
Eam1104I	CTCTTC	2 cut(s)	7, 375
EarI	CTCTTC	2 cut(s)	7, 375
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	139, 517
FaiI	YATR	3 cut(s)	62, 137, 515
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	135, 513
Fnu4HI	GCNGC	5 cut(s)	26, 71, 111, 235, 238
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	5 cut(s)	26, 71, 111, 235, 238
FspBI	CTAG	2 cut(s)	224, 327
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	5 cut(s)	26, 71, 111, 235, 238
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	234, 485
HapII	CCGG	2 cut(s)	156, 197
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	139, 517
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	15, 389, 521
HpaII	CCGG	2 cut(s)	156, 197
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	78, 133, 394
Hpy188III	TCNNGA	5 cut(s)	9, 19, 250, 284, 508
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	2 cut(s)	166, 478
HpyCH4V	TGCA	3 cut(s)	4, 45, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	2 cut(s)	75, 149
Hsp92II	CATG	2 cut(s)	139, 517
HspAI	GCGC	1 cut(s)	273
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	169, 210, 226, 365, 486, 499
Lsp1109I	GCAGC	2 cut(s)	57, 224
MaeI	CTAG	2 cut(s)	224, 327
MalI	GATC	6 cut(s)	39, 51, 85, 140, 282, 442
MboI	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
MboII	GAAGA	4 cut(s)	24, 112, 133, 392
MflI	RGATCY	2 cut(s)	49, 280
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	4 cut(s)	337, 371, 395, 449
MlyI	GAGTC	2 cut(s)	24, 383
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	7 cut(s)	15, 84, 227, 257, 262, 419, 481
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	2 cut(s)	156, 197
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	466
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
NlaIII	CATG	2 cut(s)	139, 517
NlaIV	GGNNCC	4 cut(s)	51, 160, 210, 245
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	27, 72, 112, 236, 239
PleI	GAGTC	2 cut(s)	23, 383
PpsI	GAGTC	2 cut(s)	23, 383
Psp124BI	GAGCTC	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	4 cut(s)	51, 160, 210, 245
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	49, 280
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	5 cut(s)	26, 71, 111, 235, 238
Sau3AI	GATC	6 cut(s)	37, 49, 83, 138, 280, 440
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	2 cut(s)	24, 383
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	250, 410
SmoI	CTYRAG	2 cut(s)	250, 410
Sse9I	AATT	4 cut(s)	337, 371, 395, 449
SsiI	CCGC	4 cut(s)	25, 32, 111, 235
SspMI	CTAG	2 cut(s)	224, 327
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	166, 478
TaqI	TCGA	4 cut(s)	18, 93, 144, 285
TasI	AATT	4 cut(s)	337, 371, 395, 449
TauI	GCSGC	3 cut(s)	28, 113, 237
TfiI	GAWTC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	70, 237
TspDTI	ATGAA	3 cut(s)	442, 530, 534
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	395, 449
XspI	CTAG	2 cut(s)	224, 327
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.