Rh1DG225800

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003704
Physical Location & Seq
Reverse (-)
43646192 .. 43646883
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG225800.1

Sequence Viewer

Length: 462 bp
ATGATCTTCGGCCTCGGCTCCAGCTCCACCGTCAAACACATCGTGGATCGCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCACAGCATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCAATGACTACCCGATCCTCGATCTCGCTAGTGACGGTGCCGACGAGGTGGACCCCCACTTCAACCTAGTCAAAGGCCGCTGCAGCCTTGATAATTTGGATGATAGCCTGAAGGGGAATGTTTTCGATTTGAAGGAAGAGTTGGACTCTGAATTTGTTAGTGTCCTCAAGTCCTTGGGGTTGGATGTGGAGATAAGATCAAAAGAATTCATTGAGCAAACTTTGCCCTCAGAAGTCAAGGCCAAGATTGAAGTCAAGGCCAGATTTTTTTCTGCTGGGTTCAAGAACATGAATGAATCAACATTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

4.94

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 31 - 77 3.9e-10 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 54, 160
AcsI RAATTY 4 cut(s) 96, 135, 302, 356
AcuI CTGAAG 1 cut(s) 281
AdeI CACNNNGTG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 214, 283, 401, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 2 cut(s) 24, 61
AluI AGCT 2 cut(s) 24, 61
AlwI GGATC 2 cut(s) 54, 160
AoxI GGCC 4 cut(s) 10, 226, 390, 408
ApeKI GCWGC 2 cut(s) 231, 234
ApoI RAATTY 4 cut(s) 96, 135, 302, 356
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 218, 246
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 2 cut(s) 180, 218
BfmI CTRYAG 1 cut(s) 232
BisI GCNGC 3 cut(s) 229, 232, 235
BlsI GCNGC 3 cut(s) 230, 233, 236
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 19, 190, 204
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 13, 324
BseDI CCNNGG 2 cut(s) 13, 324
BseGI GGATG 2 cut(s) 256, 340
BseMII CTCAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 218, 246
BseYI CCCAGC 1 cut(s) 425
BshFI GGCC 4 cut(s) 12, 228, 392, 410
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 71
BsnI GGCC 4 cut(s) 12, 228, 392, 410
Bsp143I GATC 5 cut(s) 3, 46, 165, 172, 347
BspACI CCGC 1 cut(s) 229
BspANI GGCC 4 cut(s) 12, 228, 392, 410
BspCNI CTCAG 1 cut(s) 392
BspLI GGNNCC 3 cut(s) 19, 190, 204
BspMAI CTGCAG 1 cut(s) 236
BspPI GGATC 2 cut(s) 54, 160
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 13, 324
BssMI GATC 5 cut(s) 3, 46, 165, 172, 347
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 31, 188
Bst6I CTCTTC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 131, 379
BstF5I GGATG 2 cut(s) 256, 340
BstKTI GATC 5 cut(s) 6, 49, 168, 175, 350
BstMBI GATC 5 cut(s) 3, 46, 165, 172, 347
BstMWI GCNNNNNNNGC 2 cut(s) 234, 373
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 218, 246
BsuRI GGCC 4 cut(s) 12, 228, 392, 410
BtsCI GGATG 2 cut(s) 256, 340
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 1 cut(s) 439
CviJI RGCY 9 cut(s) 12, 18, 24, 61, 228, 237, 258, 392, 410
CviKI_1 RGCY 9 cut(s) 12, 18, 24, 61, 228, 237, 258, 392, 410
DdeI CTNAG 2 cut(s) 131, 379
DpnI GATC 5 cut(s) 5, 48, 167, 174, 349
DpnII GATC 5 cut(s) 3, 46, 165, 172, 347
DraIII CACNNNGTG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 281
EcoRI GAATTC 2 cut(s) 135, 356
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 442
FaiI YATR 1 cut(s) 440
FatI CATG 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 229, 232, 235
FokI GGATG 2 cut(s) 263, 347
Fsp4HI GCNGC 3 cut(s) 229, 232, 235
FspBI CTAG 2 cut(s) 180, 218
GluI GCNGC 3 cut(s) 229, 232, 235
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 4 cut(s) 12, 228, 392, 410
HapII CCGG 1 cut(s) 71
Hin1II CATG 1 cut(s) 442
HinfI GANTC 2 cut(s) 296, 446
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 82, 202
Hpy188I TCNGA 4 cut(s) 95, 103, 301, 382
Hpy188III TCNNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 82, 202
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 256, 277
HpyCH4III ACNGT 2 cut(s) 31, 188
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 373
HpyF3I CTNAG 2 cut(s) 131, 379
Hsp92II CATG 1 cut(s) 442
Kzo9I GATC 5 cut(s) 3, 46, 165, 172, 347
LmnI GCTCC 2 cut(s) 23, 29
LpnPI CCDG 5 cut(s) 34, 84, 272, 411, 424
Lsp1109I GCAGC 2 cut(s) 218, 246
LweI GCATC 1 cut(s) 96
MaeI CTAG 2 cut(s) 180, 218
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 5, 48, 167, 174, 349
MboI GATC 5 cut(s) 3, 46, 165, 172, 347
MboII GAAGA 1 cut(s) 299
MluCI AATT 5 cut(s) 96, 135, 244, 302, 356
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 3 cut(s) 171, 273, 312
MnlI CCTC 6 cut(s) 23, 161, 179, 190, 326, 388
MroXI GAANNNNTTC 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 457
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 234, 373
NciI CCSGG 1 cut(s) 72
NdeII GATC 5 cut(s) 3, 46, 165, 172, 347
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 3 cut(s) 19, 190, 204
NmuCI GTSAC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 192
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 230, 233, 236
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 425
PspN4I GGNNCC 3 cut(s) 19, 190, 204
PspPI GGNCC 1 cut(s) 202
PstI CTGCAG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 457
SatI GCNGC 3 cut(s) 229, 232, 235
Sau3AI GATC 5 cut(s) 3, 46, 165, 172, 347
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 26, 63, 153, 201, 219
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 5 cut(s) 96, 135, 244, 302, 356
SsiI CCGC 1 cut(s) 229
SspMI CTAG 2 cut(s) 180, 218
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 31, 188
TaqI TCGA 2 cut(s) 171, 276
TasI AATT 5 cut(s) 96, 135, 244, 302, 356
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 446
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 231, 234
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 349, 455, 459
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 4 cut(s) 96, 135, 302, 356
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 2 cut(s) 180, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.