Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

32278246 .. 32281004

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033793

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAGAGCCCTGATAACCAGTTACGATATAACCCCTCTTCAATTCTGACCCAAGTCGAGTTGAAGAAAATCGCCGCCTACAAGGTCGTCAAGTCTGACATGATCTTCGGCCTCAGCTCCGGTTCCACCGTCAAACACGTCGTGGATCGCTTGGGTGAGCTTTTACAATCGGGAAAAGAAGAGTTGGACTCTGAATTTGTTAGTGTCCTCAAGTCATTGGGGTTGGGTGTGGAGATAAGATCAAAAGAATTCATTGAGCAAACTTTGCCCTTAAAAGTCAAGGCTAAGATTGAAGTCAAGCCAGATTTTTTTTCTGCTGGGTTCAAGAACATGAATGAATCAACATTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

6.6

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	194, 248
AdeI	CACNNNGTG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	42, 64, 293, 325
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	2 cut(s)	117, 160
AluI	AGCT	2 cut(s)	117, 160
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	194, 248
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 179, 211
AsuHPI	GGTGA	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	317
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	102, 145, 239
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	102, 145, 239
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	43, 174
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	113, 285
BstKTI	GATC	3 cut(s)	105, 148, 242
BstMBI	GATC	3 cut(s)	102, 145, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstPAI	GACNNNNGTC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	139
CviAII	CATG	2 cut(s)	100, 331
CviJI	RGCY	6 cut(s)	9, 111, 117, 160, 284, 301
CviKI_1	RGCY	6 cut(s)	9, 111, 117, 160, 284, 301
DdeI	CTNAG	2 cut(s)	113, 285
DpnI	GATC	3 cut(s)	104, 147, 241
DpnII	GATC	3 cut(s)	102, 145, 239
DraIII	CACNNNGTG	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	43, 174
EarI	CTCTTC	2 cut(s)	43, 174
Eco24I	GRGCYC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	2 cut(s)	103, 334
FaiI	YATR	3 cut(s)	30, 101, 332
FatI	CATG	2 cut(s)	99, 330
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	103, 334
HinfI	GANTC	2 cut(s)	188, 338
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	48, 97, 193
Hpy188III	TCNNGA	2 cut(s)	171, 325
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	113, 285
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	103, 334
Kzo9I	GATC	3 cut(s)	102, 145, 239
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	5 cut(s)	24, 32, 133, 303, 315
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	3 cut(s)	104, 147, 241
MboI	GATC	3 cut(s)	102, 145, 239
MboII	GAAGA	4 cut(s)	30, 76, 97, 191
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	3 cut(s)	42, 194, 248
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	46, 122, 218
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	349
MspI	CCGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	265
NdeII	GATC	3 cut(s)	102, 145, 239
NlaIII	CATG	2 cut(s)	103, 334
NlaIV	GGNNCC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	102, 145, 239
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	87, 119, 141, 162
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	42, 194, 248
SsiI	CCGC	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	42, 194, 248
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TspDTI	ATGAA	3 cut(s)	241, 347, 351
XapI	RAATTY	2 cut(s)	194, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.