Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001083.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

106318 .. 108475

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001083.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgacccaagacgagttgaagaaaatcgccgcctacaaggtcgtcgagtctggcatgatcttcggtctcaactccggctccaccgtcaaacacacagtggatcgcttgggcgagcttttacaacggtgccgacgaggtggatccccacctcaacctagtcaaaggccgctgcgggttagaaattcaagaaaaaaatttgtgcagcagcctccgctcccttccacagaccggcctcaccctgccaattgctctccgcacccagcccagagcatttactctcctctggcagaccgacatccatcttccccggcggcctctactcgatcccaacccacctgcagggcacgcacttcaccggcgaagatacagcctccagcccacctgctgctccgatcccgcgccccgcctgcagatcggcctcctcctctccggcccccctgcctgcaatactccagcctagtccatcctcctacccacgaggccagcccacagcacagatcgctgcagaatccggcagccctgcagcctcgccccacctcctgcgcaacacagcacaaccacgtcttgcgcaacccagctcttgcccatcccagcgccaccccacctgctcgcgcccagcacgctgccagccaatctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

213

Amino Acids

23.19

Weight (kDa)

11.3

Isoelectric Point (pI)

83.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	344, 390, 613
Acc16I	TGCGCA	2 cut(s)	544, 569
Acc36I	ACCTGC	3 cut(s)	344, 390, 613
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	2 cut(s)	399, 612
AciI	CCGC	8 cut(s)	30, 167, 172, 212, 254, 311, 397, 404
AclWI	GGATC	5 cut(s)	108, 135, 148, 318, 387
AcsI	RAATTY	2 cut(s)	181, 194
AdeI	CACNNNGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	228, 339
AgsI	TTSAA	2 cut(s)	19, 186
AjiI	CACGTC	1 cut(s)	562
AluBI	AGCT	2 cut(s)	115, 578
AluI	AGCT	2 cut(s)	115, 578
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	5 cut(s)	108, 135, 148, 318, 387
AoxI	GGCC	6 cut(s)	164, 230, 312, 416, 431, 480
ApeKI	GCWGC	8 cut(s)	169, 202, 205, 385, 502, 515, 523, 623
ApoI	RAATTY	2 cut(s)	181, 194
AspLEI	GCGC	5 cut(s)	401, 545, 570, 596, 614
AspS9I	GGNCC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	227, 345
BaeGI	GKGCMC	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	476
BbvI	GCAGC	8 cut(s)	156, 214, 217, 372, 489, 527, 535, 610
BccI	CCATC	3 cut(s)	307, 471, 594
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	156, 458
BfmI	CTRYAG	4 cut(s)	337, 408, 503, 521
BfoI	RGCGCY	1 cut(s)	597
BfuAI	ACCTGC	3 cut(s)	344, 390, 613
Bme1390I	CCNGG	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	4 cut(s)	79, 128, 142, 434
BmrFI	CCNGG	1 cut(s)	308
BpmI	CTGGAG	2 cut(s)	357, 436
BpuMI	CCSGG	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 339
Bse118I	RCCGGY	2 cut(s)	228, 355
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	295, 463, 586
BseLI	CCNNNNNNNGG	2 cut(s)	228, 339
BseRI	GAGGAG	3 cut(s)	270, 411, 414
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	8 cut(s)	156, 214, 217, 372, 489, 527, 535, 610
BseYI	CCCAGC	4 cut(s)	259, 574, 590, 615
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	2 cut(s)	399, 612
BshFI	GGCC	6 cut(s)	166, 232, 314, 418, 433, 482
BshNI	GGYRCC	1 cut(s)	126
BsiSI	CCGG	6 cut(s)	75, 229, 308, 356, 430, 512
BslI	CCNNNNNNNGG	2 cut(s)	228, 339
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	6 cut(s)	166, 232, 314, 418, 433, 482
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
BspACI	CCGC	8 cut(s)	30, 167, 172, 212, 254, 311, 397, 404
BspANI	GGCC	6 cut(s)	166, 232, 314, 418, 433, 482
BspFNI	CGCG	2 cut(s)	399, 612
BspLI	GGNNCC	4 cut(s)	79, 128, 142, 434
BspMAI	CTGCAG	4 cut(s)	341, 412, 507, 525
BspMI	ACCTGC	3 cut(s)	344, 390, 613
BspPI	GGATC	5 cut(s)	108, 135, 148, 318, 387
BspT107I	GGYRCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	214
BsrFI	RCCGGY	2 cut(s)	228, 355
BssAI	RCCGGY	2 cut(s)	228, 355
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
BssSI	CACGAG	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	476
Bst4CI	ACNGT	3 cut(s)	85, 97, 126
BstC8I	GCNNGC	8 cut(s)	113, 346, 408, 443, 484, 610, 621, 628
BstF5I	GGATG	3 cut(s)	295, 463, 586
BstFNI	CGCG	2 cut(s)	399, 612
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	5 cut(s)	401, 545, 570, 596, 614
BstKTI	GATC	7 cut(s)	60, 103, 143, 326, 395, 415, 500
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 345, 407, 499, 620
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	4 cut(s)	337, 408, 503, 521
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	2 cut(s)	399, 612
BstV1I	GCAGC	8 cut(s)	156, 214, 217, 372, 489, 527, 535, 610
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	6 cut(s)	166, 232, 314, 418, 433, 482
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	3 cut(s)	295, 463, 586
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	3 cut(s)	344, 390, 613
Cac8I	GCNNGC	8 cut(s)	113, 346, 408, 443, 484, 610, 621, 628
CfoI	GCGC	5 cut(s)	401, 545, 570, 596, 614
Cfr10I	RCCGGY	2 cut(s)	228, 355
Cfr13I	GGNCC	1 cut(s)	432
CviAII	CATG	1 cut(s)	55
DpnI	GATC	7 cut(s)	59, 102, 142, 325, 394, 414, 499
DpnII	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
DraIII	CACNNNGTG	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	71
FaeI	CATG	1 cut(s)	58
FaiI	YATR	1 cut(s)	56
FatI	CATG	1 cut(s)	54
FauI	CCCGC	3 cut(s)	165, 404, 411
FokI	GGATG	3 cut(s)	282, 450, 573
FspBI	CTAG	2 cut(s)	156, 458
FspI	TGCGCA	2 cut(s)	544, 569
GlaI	GCGC	5 cut(s)	400, 544, 569, 595, 613
GsaI	CCCAGC	4 cut(s)	263, 578, 594, 619
GsuI	CTGGAG	2 cut(s)	357, 436
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	6 cut(s)	166, 232, 314, 418, 433, 482
HapII	CCGG	6 cut(s)	75, 229, 308, 356, 430, 512
HhaI	GCGC	5 cut(s)	401, 545, 570, 596, 614
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	5 cut(s)	399, 543, 568, 594, 612
HinP1I	GCGC	5 cut(s)	399, 543, 568, 594, 612
HinfI	GANTC	2 cut(s)	47, 508
HpaII	CCGG	6 cut(s)	75, 229, 308, 356, 430, 512
HphI	GGTGA	2 cut(s)	227, 345
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	1 cut(s)	186
Hpy99I	CGWCG	2 cut(s)	47, 135
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	3 cut(s)	85, 97, 126
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	6 cut(s)	202, 339, 410, 445, 505, 523
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 345, 407, 499, 620
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	5 cut(s)	399, 543, 568, 594, 612
Kzo9I	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
LmnI	GCTCC	3 cut(s)	83, 219, 393
Lsp1109I	GCAGC	8 cut(s)	156, 214, 217, 372, 489, 527, 535, 610
MaeI	CTAG	2 cut(s)	156, 458
MaeII	ACGT	1 cut(s)	561
MalI	GATC	7 cut(s)	59, 102, 142, 325, 394, 414, 499
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
MboII	GAAGA	4 cut(s)	31, 52, 294, 373
MfeI	CAATTG	1 cut(s)	244
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	3 cut(s)	181, 194, 244
MlyI	GAGTC	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	6 cut(s)	75, 229, 308, 356, 430, 512
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	244
MvnI	CGCG	2 cut(s)	399, 612
MwoI	GCNNNNNNNGC	5 cut(s)	211, 345, 407, 499, 620
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	4 cut(s)	79, 128, 142, 434
NsbI	TGCGCA	2 cut(s)	544, 569
PaqCI	CACCTGC	3 cut(s)	344, 390, 613
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	508
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspFI	CCCAGC	4 cut(s)	259, 574, 590, 615
PspN4I	GGNNCC	4 cut(s)	79, 128, 142, 434
PspPI	GGNCC	1 cut(s)	432
PstI	CTGCAG	4 cut(s)	341, 412, 507, 525
PsuI	RGATCY	1 cut(s)	140
Sau3AI	GATC	7 cut(s)	57, 100, 140, 323, 392, 412, 497
Sau96I	GGNCC	1 cut(s)	432
SbfI	CCTGCAGG	1 cut(s)	341
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	308
SdaI	CCTGCAGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	346
SfcI	CTRYAG	4 cut(s)	337, 408, 503, 521
SgrAI	CRCCGGYG	1 cut(s)	355
Sse8387I	CCTGCAGG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	181, 194, 244
SsiI	CCGC	8 cut(s)	30, 167, 172, 212, 254, 311, 397, 404
SspMI	CTAG	2 cut(s)	156, 458
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	85, 97, 126
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	45, 322
TaqII	GACCGA	2 cut(s)	53, 306
TasI	AATT	3 cut(s)	181, 194, 244
TauI	GCSGC	3 cut(s)	32, 169, 314
TfiI	GAWTC	1 cut(s)	508
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	8 cut(s)	169, 202, 205, 385, 502, 515, 523, 623
TspRI	CASTG	1 cut(s)	102
XapI	RAATTY	2 cut(s)	181, 194
XspI	CTAG	2 cut(s)	156, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.