Rh5CG579100

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003704
Physical Location & Seq
Reverse (-)
82274374 .. 82279675
5302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG579100.1

Sequence Viewer

Length: 1044 bp
ATGGCAAAGTTTGCACCGTTCTTGTCTGTTTGCGCTGAAGTTTTGAGGATTAAACATGCTTACGATTTGGTGTTTGGAAATGTGAATGAATATTTTAGGGGTTTGATTGTGGGTGGAATGGGTTTATTAATGGCAAAGTTTGTACATTTCTTATCTGTTTGCGCTGATGGTTTAGGGATTAAACATGCTTCTGATTTGGTGTTTGGAAATGTGAATGAATATTTTAGGGGTTTGATTGTGGGTGGAATGGGCTTATACATGATTAATCAGCTTCCATTCGGAAGCTCTTCCTTGAACCGCAGAATCAGGAAGCTCAATTTCTTAGCTTTGGAATTCTGCTTATGCGGGAATCAAGTTGAAGACGCGGAATGGCCCAACACGGTTGTCATCCATAGTTACAATGCCATTGGTTTCAAGAAAAGGGAAATGATATTTGTTATTCCACAAGCAATATGCACTAGATATGGACTTGATGTGGGTTCCAACCGATATGTGACGCACAAATGGATCAAACAAGTAAGACCCTTTTCTTTCCTCCTCTATTTCCCAATTTCTGCTTTCAGCTCTTCAATTCTGACCCAAGACGAGTTGAAGAAAATCGCCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTCGGTCTCAACTCCGGCTCCACCGTCAAACACACAGTGGATCGCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCACAACATCATCGGAATTTCCAAGAACACCGACCAACAAGTCATCTCTCTTAGAATTTCATTATCCAACCTCGATGACTACTCGATCCTCGATCTCGCTATCGACGGTGCCGACGAGGTGGATCCCCACCTCAACCTAGGGAAGGTTTTGGAATTGAAGGAAGAGCTGGACTCTGAATTTGTTAGTGTCCTCAAGTCCTTGGGGTTGGATGTGGAGATAAGATCAAAAGAATCAATTGAGCAAACTTTGCCCTCAGAAGTCAAGGCCAAGATTGAAGTCAAGACCAGATTTTTTTCTACTGGGTTCATGAACATGAATGAATCAACATTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

347

Amino Acids

38.75

Weight (kDa)

6.72

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 240 - 284 6.6e-08 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 815
AccII CGCG 1 cut(s) 365
AciI CCGC 4 cut(s) 298, 345, 365, 603
AclWI GGATC 5 cut(s) 515, 681, 787, 824, 837
AcsI RAATTY 4 cut(s) 332, 723, 762, 884
AcuI CTGAAG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 670
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 850
AgsI TTSAA 7 cut(s) 295, 359, 415, 570, 592, 865, 983
AluBI AGCT 7 cut(s) 271, 285, 313, 326, 564, 688, 874
AluI AGCT 7 cut(s) 271, 285, 313, 326, 564, 688, 874
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 5 cut(s) 515, 681, 787, 824, 837
AoxI GGCC 2 cut(s) 371, 972
ApoI RAATTY 4 cut(s) 332, 723, 762, 884
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AseI ATTAAT 2 cut(s) 128, 264
Asp700I GAANNNNTTC 1 cut(s) 286
AspA2I CCTAGG 1 cut(s) 844
AspLEI GCGC 2 cut(s) 35, 164
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 699
AvrII CCTAGG 1 cut(s) 844
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 366
BccI CCATC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 616, 650
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 2 cut(s) 459, 845
BisI GCNGC 1 cut(s) 603
BlnI CCTAGG 1 cut(s) 844
BlsI GCNGC 1 cut(s) 604
Bme1390I CCNGG 1 cut(s) 699
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 4 cut(s) 481, 652, 817, 831
BmrFI CCNGG 1 cut(s) 699
BmrI ACTGGG 1 cut(s) 1017
BmuI ACTGGG 1 cut(s) 1017
BpiI GAAGAC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 863, 895
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 844, 906
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 1 cut(s) 850
Bse1I ACTGG 1 cut(s) 1012
BseDI CCNNGG 2 cut(s) 844, 906
BseGI GGATG 2 cut(s) 387, 922
BseLI CCNNNNNNNGG 1 cut(s) 850
BseMII CTCAG 1 cut(s) 975
BseNI ACTGG 1 cut(s) 1012
BseRI GAGGAG 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 2 cut(s) 373, 974
BshNI GGYRCC 1 cut(s) 815
BsiSI CCGG 3 cut(s) 624, 648, 698
BslI CCNNNNNNNGG 1 cut(s) 850
BsmAI GTCTC 1 cut(s) 644
BsnI GGCC 2 cut(s) 373, 974
Bso31I GGTCTC 1 cut(s) 644
Bsp1407I TGTACA 1 cut(s) 142
Bsp143I GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
BspACI CCGC 4 cut(s) 298, 345, 365, 603
BspANI GGCC 2 cut(s) 373, 974
BspCNI CTCAG 1 cut(s) 974
BspFNI CGCG 1 cut(s) 365
BspHI TCATGA 1 cut(s) 1014
BspLI GGNNCC 4 cut(s) 481, 652, 817, 831
BspPI GGATC 5 cut(s) 515, 681, 787, 824, 837
BspQI GCTCTTC 3 cut(s) 292, 571, 864
BspT107I GGYRCC 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 644
BsrGI TGTACA 1 cut(s) 142
BsrI ACTGG 1 cut(s) 1012
BssECI CCNNGG 2 cut(s) 844, 906
BssMI GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
BssT1I CCWWGG 2 cut(s) 844, 906
Bst4CI ACNGT 5 cut(s) 18, 382, 658, 670, 815
Bst6I CTCTTC 3 cut(s) 292, 571, 864
BstAPI GCANNNNNTGC 2 cut(s) 11, 955
BstAUI TGTACA 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 3 cut(s) 322, 758, 961
BstENI CCTNNNNNAGG 1 cut(s) 848
BstF5I GGATG 2 cut(s) 387, 922
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 2 cut(s) 35, 164
BstKTI GATC 7 cut(s) 510, 633, 676, 795, 802, 832, 932
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
BstMWI GCNNNNNNNGC 2 cut(s) 11, 955
BstNSI RCATGY 2 cut(s) 59, 188
BstSCI CCNGG 1 cut(s) 697
BstUI CGCG 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BsuRI GGCC 2 cut(s) 373, 974
BtsCI GGATG 2 cut(s) 387, 922
BtsIMutI CAGTG 1 cut(s) 675
Cac8I GCNNGC 1 cut(s) 686
CciI TCATGA 1 cut(s) 1014
CfoI GCGC 2 cut(s) 35, 164
Cfr13I GGNCC 1 cut(s) 372
CseI GACGC 2 cut(s) 371, 505
Csp6I GTAC 1 cut(s) 143
CviAII CATG 6 cut(s) 56, 185, 259, 628, 1015, 1021
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 3 cut(s) 322, 758, 961
DpnI GATC 7 cut(s) 509, 632, 675, 794, 801, 831, 931
DpnII GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
DraIII CACNNNGTG 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
Eam1104I CTCTTC 3 cut(s) 292, 571, 864
EarI CTCTTC 3 cut(s) 292, 571, 864
Eco130I CCWWGG 2 cut(s) 844, 906
Eco31I GGTCTC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 844, 906
ErhI CCWWGG 2 cut(s) 844, 906
FaeI CATG 6 cut(s) 59, 188, 262, 631, 1018, 1024
FatI CATG 6 cut(s) 55, 184, 258, 627, 1014, 1020
FauI CCCGC 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 2 cut(s) 374, 929
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 2 cut(s) 459, 845
GlaI GCGC 2 cut(s) 34, 163
GluI GCNGC 1 cut(s) 603
HaeIII GGCC 2 cut(s) 373, 974
HapII CCGG 3 cut(s) 624, 648, 698
HgaI GACGC 2 cut(s) 371, 505
HhaI GCGC 2 cut(s) 35, 164
Hin1II CATG 6 cut(s) 59, 188, 262, 631, 1018, 1024
Hin6I GCGC 2 cut(s) 33, 162
HinP1I GCGC 2 cut(s) 33, 162
HinfI GANTC 6 cut(s) 303, 349, 620, 878, 938, 1028
HpaII CCGG 3 cut(s) 624, 648, 698
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 6 cut(s) 193, 281, 576, 722, 883, 964
Hpy188III TCNNGA 4 cut(s) 307, 415, 988, 1015
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 3 cut(s) 620, 815, 824
HpyAV CCTTC 2 cut(s) 844, 859
HpyCH4III ACNGT 5 cut(s) 18, 382, 658, 670, 815
HpyCH4V TGCA 2 cut(s) 14, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 955
HpyF3I CTNAG 3 cut(s) 322, 758, 961
Hsp92II CATG 6 cut(s) 59, 188, 262, 631, 1018, 1024
HspAI GCGC 2 cut(s) 33, 162
Kzo9I GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
LguI GCTCTTC 3 cut(s) 292, 571, 864
LmnI GCTCC 1 cut(s) 656
LpnPI CCDG 7 cut(s) 292, 637, 661, 711, 860, 993, 1006
MaeI CTAG 2 cut(s) 459, 845
MaeIII GTNAC 2 cut(s) 395, 493
MalI GATC 7 cut(s) 509, 632, 675, 794, 801, 831, 931
MboI GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
MboII GAAGA 6 cut(s) 279, 371, 558, 604, 625, 881
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 1 cut(s) 829
MluCI AATT 9 cut(s) 316, 332, 549, 570, 723, 762, 860, 884, 942
MlyI GAGTC 2 cut(s) 629, 872
MmeI TCCRAC 3 cut(s) 507, 798, 894
MnlI CCTC 9 cut(s) 39, 545, 548, 788, 806, 817, 848, 908, 970
MroXI GAANNNNTTC 1 cut(s) 286
MseI TTAA 4 cut(s) 51, 128, 180, 264
MslI CAYNNNNRTG 2 cut(s) 1019, 1039
MspI CCGG 3 cut(s) 624, 648, 698
MspR9I CCNGG 1 cut(s) 699
MunI CAATTG 1 cut(s) 942
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 2 cut(s) 11, 955
NciI CCSGG 1 cut(s) 699
NdeII GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
NlaIII CATG 6 cut(s) 59, 188, 262, 631, 1018, 1024
NlaIV GGNNCC 4 cut(s) 481, 652, 817, 831
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 2 cut(s) 59, 188
PagI TCATGA 1 cut(s) 1014
PciSI GCTCTTC 3 cut(s) 292, 571, 864
PcsI WCGNNNNNNNCGW 2 cut(s) 816, 819
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 4 cut(s) 303, 349, 938, 1028
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 2 cut(s) 628, 872
PpsI GAGTC 2 cut(s) 628, 872
PshBI ATTAAT 2 cut(s) 128, 264
PspN4I GGNNCC 4 cut(s) 481, 652, 817, 831
PspPI GGNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 1019, 1039
SapI GCTCTTC 3 cut(s) 292, 571, 864
SaqAI TTAA 4 cut(s) 51, 128, 180, 264
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 7 cut(s) 507, 630, 673, 792, 799, 829, 929
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 2 cut(s) 629, 872
ScrFI CCNGG 1 cut(s) 699
SmiMI CAYNNNNRTG 2 cut(s) 1019, 1039
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
Sse9I AATT 9 cut(s) 316, 332, 549, 570, 723, 762, 860, 884, 942
SsiI CCGC 4 cut(s) 298, 345, 365, 603
SspI AATATT 2 cut(s) 92, 221
SspMI CTAG 2 cut(s) 459, 845
StyD4I CCNGG 1 cut(s) 697
StyI CCWWGG 2 cut(s) 844, 906
TaaI ACNGT 5 cut(s) 18, 382, 658, 670, 815
TaqI TCGA 5 cut(s) 618, 780, 791, 798, 810
TaqII GACCGA 1 cut(s) 626
TasI AATT 9 cut(s) 316, 332, 549, 570, 723, 762, 860, 884, 942
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 4 cut(s) 303, 349, 938, 1028
Tru1I TTAA 4 cut(s) 51, 128, 180, 264
Tru9I TTAA 4 cut(s) 51, 128, 180, 264
TscAI CASTG 1 cut(s) 675
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 7 cut(s) 102, 231, 756, 1003, 1031, 1037, 1041
TspRI CASTG 1 cut(s) 675
VspI ATTAAT 2 cut(s) 128, 264
XagI CCTNNNNNAGG 1 cut(s) 848
XapI RAATTY 4 cut(s) 332, 723, 762, 884
XceI RCATGY 2 cut(s) 59, 188
XmaJI CCTAGG 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 286
XspI CTAG 2 cut(s) 459, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.