Rh3DG172200

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003704
Physical Location & Seq
Forward (+)
15122871 .. 15124329
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG172200.1

Sequence Viewer

Length: 432 bp
ATGATCTTCGGTCTCAACTCCGGCTTCACCGTCAAACACACCGTGGATCTCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCATAACATCATCAGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATATCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATCGACGGTGCCGACGAGGTCGATCCCCACCTCAACCTAGTCAAAGGCCGCTGCGGGTTAGAAATTTGTGCTGGGTTCAAGAACATGAACGAATCAAGGATTGCTGACATTTTCTTCTTTTGCTTTTTAGCCGGGTTCAAGAACATAAATATGATGAATTTCTGGGTTCAAGTGTTGCAATCTAGTTGTTTTCTTGTCTTTGAATCTCGAATGTTTGTTTTTGTGTCTAATCTTGATGTTGGGGGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

143

Amino Acids

16.04

Weight (kDa)

5.19

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 31 - 79 8.4e-12 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 2 cut(s) 229, 234
AclWI GGATC 3 cut(s) 54, 160, 197
AcsI RAATTY 3 cut(s) 96, 243, 337
AdeI CACNNNGTG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 259, 319, 350, 383
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 54, 160, 197
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 3 cut(s) 96, 243, 337
AsuC2I CCSGG 2 cut(s) 72, 313
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 218
BcnI CCSGG 2 cut(s) 72, 313
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 3 cut(s) 218, 363, 430
BisI GCNGC 2 cut(s) 229, 232
BlsI GCNGC 2 cut(s) 230, 233
Bme1390I CCNGG 2 cut(s) 72, 313
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 72, 313
BpuMI CCSGG 2 cut(s) 72, 313
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 3 cut(s) 21, 71, 312
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 5 cut(s) 3, 46, 165, 172, 202
BspACI CCGC 2 cut(s) 229, 234
BspANI GGCC 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 3 cut(s) 54, 160, 197
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 5 cut(s) 3, 46, 165, 172, 202
Bst4CI ACNGT 3 cut(s) 31, 43, 188
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 5 cut(s) 6, 49, 168, 175, 205
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 5 cut(s) 3, 46, 165, 172, 202
BstSCI CCNGG 2 cut(s) 70, 311
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 59
CviAII CATG 1 cut(s) 265
CviJI RGCY 4 cut(s) 24, 61, 228, 311
CviKI_1 RGCY 4 cut(s) 24, 61, 228, 311
DdeI CTNAG 1 cut(s) 131
DpnI GATC 5 cut(s) 5, 48, 167, 174, 204
DpnII GATC 5 cut(s) 3, 46, 165, 172, 202
DraIII CACNNNGTG 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 17
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 84, 266, 326, 332
FatI CATG 1 cut(s) 264
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 229, 232
Fsp4HI GCNGC 2 cut(s) 229, 232
FspBI CTAG 3 cut(s) 218, 363, 430
GluI GCNGC 2 cut(s) 229, 232
GsaI CCCAGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 228
HapII CCGG 3 cut(s) 21, 71, 312
Hin1II CATG 1 cut(s) 268
HinfI GANTC 2 cut(s) 272, 383
HpaII CCGG 3 cut(s) 21, 71, 312
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 95, 103
Hpy188III TCNNGA 4 cut(s) 259, 319, 387, 413
Hpy99I CGWCG 2 cut(s) 188, 197
HpyCH4III ACNGT 3 cut(s) 31, 43, 188
HpyCH4V TGCA 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 5 cut(s) 3, 46, 165, 172, 202
LpnPI CCDG 5 cut(s) 34, 84, 237, 325, 328
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 3 cut(s) 218, 363, 430
MalI GATC 5 cut(s) 5, 48, 167, 174, 204
MboI GATC 5 cut(s) 3, 46, 165, 172, 202
MboII GAAGA 1 cut(s) 286
MflI RGATCY 1 cut(s) 46
MluCI AATT 3 cut(s) 96, 243, 337
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 4 cut(s) 161, 179, 190, 221
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 3 cut(s) 21, 71, 312
MspR9I CCNGG 2 cut(s) 72, 313
NciI CCSGG 2 cut(s) 72, 313
NdeII GATC 5 cut(s) 3, 46, 165, 172, 202
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 192
PfeI GAWTC 2 cut(s) 272, 383
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 230, 233
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 329
SatI GCNGC 2 cut(s) 229, 232
Sau3AI GATC 5 cut(s) 3, 46, 165, 172, 202
ScrFI CCNGG 2 cut(s) 72, 313
SetI ASST 5 cut(s) 63, 153, 201, 213, 219
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 3 cut(s) 96, 243, 337
SsiI CCGC 2 cut(s) 229, 234
SspMI CTAG 3 cut(s) 218, 363, 430
StyD4I CCNGG 2 cut(s) 70, 311
TaaI ACNGT 3 cut(s) 31, 43, 188
TaqI TCGA 5 cut(s) 153, 171, 183, 201, 388
TasI AATT 3 cut(s) 96, 243, 337
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 2 cut(s) 272, 383
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 3 cut(s) 71, 281, 350
Tth111I GACNNNGTC 1 cut(s) 197
XapI RAATTY 3 cut(s) 96, 243, 337
XspI CTAG 3 cut(s) 218, 363, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.