Rmu_sc0000785.1_g000022

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000785.1
OG0003704
Physical Location & Seq
Reverse (-)
122856 .. 123110
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000785.1_g000022.1.cds

Sequence Viewer

Length: 255 bp
ctgaccccaggtgagttgaagaaaattgccgcctacaaggttgtcgagtccggcatgatcttcaacctcggctccggctccaccttcaaacacgccgtggatcgcatcggcgagcttttgcaactcggaaaagttcacaacatcatcggaatcaccgcttccgagaacatccaccaacaagtcatctctcttataattccattatccaacctccatgactacccgatcctcgatctcgctatcgacggcgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

84

Amino Acids

9.03

Weight (kDa)

6.03

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 248
AciI CCGC 2 cut(s) 30, 156
AclWI GGATC 2 cut(s) 108, 220
AcyI GRCGYC 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 19, 64, 88
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 2 cut(s) 108, 220
AspLEI GCGC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 23, 145
BanI GGYRCC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 252
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 9
BmiI GGNNCC 3 cut(s) 73, 79, 250
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 7, 67, 96
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 3 cut(s) 7, 67, 96
BseGI GGATG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 2 cut(s) 51, 75
Bsp143I GATC 4 cut(s) 57, 100, 225, 232
BspACI CCGC 2 cut(s) 30, 156
BspLI GGNNCC 3 cut(s) 73, 79, 250
BspPI GGATC 2 cut(s) 108, 220
BspT107I GGYRCC 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 7, 67, 96
BssMI GATC 4 cut(s) 57, 100, 225, 232
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 4 cut(s) 60, 103, 228, 235
BstMBI GATC 4 cut(s) 57, 100, 225, 232
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 251
CviAII CATG 2 cut(s) 55, 215
CviJI RGCY 3 cut(s) 72, 78, 115
CviKI_1 RGCY 3 cut(s) 72, 78, 115
DinI GGCGCC 1 cut(s) 250
DpnI GATC 4 cut(s) 59, 102, 227, 234
DpnII GATC 4 cut(s) 57, 100, 225, 232
DraIII CACNNNGTG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 7
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
FaeI CATG 2 cut(s) 58, 218
FaiI YATR 3 cut(s) 56, 194, 216
FatI CATG 2 cut(s) 54, 214
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 252
HapII CCGG 2 cut(s) 51, 75
HhaI GCGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 58, 218
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 2 cut(s) 47, 150
HpaII CCGG 2 cut(s) 51, 75
HphI GGTGA 2 cut(s) 23, 145
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 128, 149, 163
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 58, 218
HspAI GCGC 1 cut(s) 249
KasI GGCGCC 1 cut(s) 248
Kzo9I GATC 4 cut(s) 57, 100, 225, 232
LmnI GCTCC 2 cut(s) 77, 83
LpnPI CCDG 3 cut(s) 21, 64, 88
LweI GCATC 1 cut(s) 114
MalI GATC 4 cut(s) 59, 102, 227, 234
MboI GATC 4 cut(s) 57, 100, 225, 232
MboII GAAGA 2 cut(s) 31, 52
MluCI AATT 2 cut(s) 24, 195
Mly113I GGCGCC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 3 cut(s) 77, 221, 239
MspI CCGG 2 cut(s) 51, 75
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
NarI GGCGCC 1 cut(s) 249
NdeII GATC 4 cut(s) 57, 100, 225, 232
NlaIII CATG 2 cut(s) 58, 218
NlaIV GGNNCC 3 cut(s) 73, 79, 250
NmeAIII GCCGAG 1 cut(s) 48
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 55
PluTI GGCGCC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 55
PsiI TTATAA 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 73, 79, 250
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 4 cut(s) 57, 100, 225, 232
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 9
SetI ASST 6 cut(s) 13, 42, 69, 86, 117, 213
SfaNI GCATC 1 cut(s) 114
SfoI GGCGCC 1 cut(s) 250
Sse9I AATT 2 cut(s) 24, 195
SsiI CCGC 2 cut(s) 30, 156
SspDI GGCGCC 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 7
TaqI TCGA 3 cut(s) 45, 231, 243
TasI AATT 2 cut(s) 24, 195
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.