Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001132.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Forward (+)

41312 .. 41743

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001132.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgatcttcggtctcaactccggctccaccgtcaaacacaccgtggatcgcttgggcgagcttttacaaccgggaaaagttcacaacatcatcagaatttctgaaaacacccaccaacaagtcatctctcttagaatttcattatccaacctcgatgactacccgatccttgatcctgctatcgacggtgccaacgaggtggatccccacctcaacctagtcaaaggccgctgcgggttagaaattcgtgctgggttcaagaacatgaacgaatcaaggattgctgacattttctttttttgctttttagccgggtttaagaacataaatatgatgaatttctgggttcaagtgttgcaatctagttgttttcttgtctttgaatctcgaatgtttgtttttgtgtctaatcttgatgttgggggtctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

143

Amino Acids

16.08

Weight (kDa)

6.04

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	2 cut(s)	229, 234
AclWI	GGATC	5 cut(s)	54, 160, 167, 197, 210
AcsI	RAATTY	4 cut(s)	96, 135, 243, 337
AdeI	CACNNNGTG	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	259, 350, 383
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	5 cut(s)	54, 160, 167, 197, 210
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	4 cut(s)	96, 135, 243, 337
AsuC2I	CCSGG	2 cut(s)	72, 313
BamHI	GGATCC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	218
BcnI	CCSGG	2 cut(s)	72, 313
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	3 cut(s)	218, 363, 430
BisI	GCNGC	2 cut(s)	229, 232
BlsI	GCNGC	2 cut(s)	230, 233
Bme1390I	CCNGG	2 cut(s)	72, 313
BmiI	GGNNCC	3 cut(s)	25, 190, 204
BmrFI	CCNGG	2 cut(s)	72, 313
BpuMI	CCSGG	2 cut(s)	72, 313
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
BseDI	CCNNGG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	21, 71, 312
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	3, 46, 165, 172, 202
BspACI	CCGC	2 cut(s)	229, 234
BspANI	GGCC	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	25, 190, 204
BspPI	GGATC	5 cut(s)	54, 160, 167, 197, 210
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	5 cut(s)	3, 46, 165, 172, 202
Bst4CI	ACNGT	3 cut(s)	31, 43, 188
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	6, 49, 168, 175, 205
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	5 cut(s)	3, 46, 165, 172, 202
BstSCI	CCNGG	2 cut(s)	70, 311
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	59
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	4 cut(s)	24, 61, 228, 311
CviKI_1	RGCY	4 cut(s)	24, 61, 228, 311
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	5 cut(s)	5, 48, 167, 174, 204
DpnII	GATC	5 cut(s)	3, 46, 165, 172, 202
DraIII	CACNNNGTG	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	17
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	266, 326, 332
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	229, 232
Fsp4HI	GCNGC	2 cut(s)	229, 232
FspBI	CTAG	3 cut(s)	218, 363, 430
GluI	GCNGC	2 cut(s)	229, 232
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	3 cut(s)	21, 71, 312
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	2 cut(s)	272, 383
HpaII	CCGG	3 cut(s)	21, 71, 312
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	95, 103
Hpy188III	TCNNGA	3 cut(s)	259, 387, 413
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	31, 43, 188
HpyCH4V	TGCA	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	3, 46, 165, 172, 202
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	34, 84, 189, 237, 325, 328
Lsp1109I	GCAGC	1 cut(s)	218
MaeI	CTAG	3 cut(s)	218, 363, 430
MalI	GATC	5 cut(s)	5, 48, 167, 174, 204
MboI	GATC	5 cut(s)	3, 46, 165, 172, 202
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	4 cut(s)	96, 135, 243, 337
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	161, 190, 221
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	3 cut(s)	21, 71, 312
MspR9I	CCNGG	2 cut(s)	72, 313
NciI	CCSGG	2 cut(s)	72, 313
NdeII	GATC	5 cut(s)	3, 46, 165, 172, 202
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	25, 190, 204
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	272, 383
PkrI	GCNGC	2 cut(s)	230, 233
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	25, 190, 204
PsuI	RGATCY	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	229, 232
Sau3AI	GATC	5 cut(s)	3, 46, 165, 172, 202
ScrFI	CCNGG	2 cut(s)	72, 313
SetI	ASST	5 cut(s)	63, 153, 201, 213, 219
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	96, 135, 243, 337
SsiI	CCGC	2 cut(s)	229, 234
SspMI	CTAG	3 cut(s)	218, 363, 430
StyD4I	CCNGG	2 cut(s)	70, 311
TaaI	ACNGT	3 cut(s)	31, 43, 188
TaqI	TCGA	3 cut(s)	153, 183, 388
TasI	AATT	4 cut(s)	96, 135, 243, 337
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	272, 383
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	3 cut(s)	129, 281, 350
XapI	RAATTY	4 cut(s)	96, 135, 243, 337
XspI	CTAG	3 cut(s)	218, 363, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.