Rroxscaffold_3G00257750

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003704
Physical Location & Seq
Forward (+)
52056686 .. 52058019
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257750.1

Sequence Viewer

Length: 348 bp
ATGATCTTCGACATTGGCTCCGGTTCCACCATCAAACACACCTTGGATAGCATTAGCGAGCTTTTGCAACTGGAAAAAGTTGATATCATCATCGGAATCACCGCTCCCGAGAACACTTACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCGATGACTACCCAATCCTCGATCTCGCTATTGACAGTGCCGACGAGGTGGACCCCTACCTCAATCTAGTCAAGGGTCACTGGAGGTACCTCTTGAGAGAGAAAATGGTGGAGGACGCGTCAATGTGGGTTGCACTCGGAATATATCCTCTAGCGCTTGCACTGAGCCACGACCTCAGCAGAAAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

115

Amino Acids

12.92

Weight (kDa)

4.58

Isoelectric Point (pI)

25.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 32 - 94 1.3e-14 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 104
AccII CGCG 1 cut(s) 275
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 273
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 107
Aor51HI AGCGCT 1 cut(s) 312
ApoI RAATTY 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 38
BfaI CTAG 2 cut(s) 224, 308
BfoI RGCGCY 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 4 cut(s) 19, 25, 210, 245
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 20
BsaXI ACNNNNNCTCC 3 cut(s) 32, 260, 290
Bse1I ACTGG 2 cut(s) 75, 242
BseDI CCNNGG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 311, 346
BseNI ACTGG 2 cut(s) 75, 242
Bsh1236I CGCG 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 107
Bsp143I GATC 2 cut(s) 3, 178
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 312, 345
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 4 cut(s) 19, 25, 210, 245
BspT107I GGYRCC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 104
BsrI ACTGG 2 cut(s) 75, 242
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 2 cut(s) 3, 178
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 59, 315
BstDEI CTNAG 3 cut(s) 137, 320, 332
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 6, 181
BstMBI GATC 2 cut(s) 3, 178
BstUI CGCG 1 cut(s) 275
BtsIMutI CAGTG 3 cut(s) 199, 235, 317
Cac8I GCNNGC 2 cut(s) 59, 315
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 2 cut(s) 264, 281
Csp6I GTAC 1 cut(s) 244
CviJI RGCY 3 cut(s) 18, 61, 324
CviKI_1 RGCY 3 cut(s) 18, 61, 324
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 137, 320, 332
DpnI GATC 2 cut(s) 5, 180
DpnII GATC 2 cut(s) 3, 178
Eco130I CCWWGG 1 cut(s) 42
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 141
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaiI YATR 1 cut(s) 301
FspBI CTAG 2 cut(s) 224, 308
GlaI GCGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 314
HapII CCGG 1 cut(s) 21
HgaI GACGC 2 cut(s) 264, 281
HhaI GCGC 1 cut(s) 313
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 95, 296
Hpy188III TCNNGA 2 cut(s) 107, 250
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 67, 290, 317
HpyF3I CTNAG 3 cut(s) 137, 320, 332
HspAI GCGC 1 cut(s) 311
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 2 cut(s) 3, 178
LmnI GCTCC 2 cut(s) 23, 109
LpnPI CCDG 3 cut(s) 34, 56, 223
MaeI CTAG 2 cut(s) 224, 308
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 5, 180
MbiI CCGCTC 1 cut(s) 104
MboI GATC 2 cut(s) 3, 178
MluCI AATT 1 cut(s) 141
MluI ACGCGT 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 9 cut(s) 167, 185, 196, 227, 234, 257, 262, 315, 341
MspI CCGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 275
NdeII GATC 2 cut(s) 3, 178
NlaIV GGNNCC 4 cut(s) 19, 25, 210, 245
NmuCI GTSAC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 19, 25, 210, 245
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 3, 178
Sau96I GGNCC 1 cut(s) 208
SetI ASST 8 cut(s) 44, 63, 159, 207, 219, 245, 249, 333
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 102
SspMI CTAG 2 cut(s) 224, 308
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 9, 159, 177
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 96
TscAI CASTG 3 cut(s) 199, 242, 324
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 3 cut(s) 199, 242, 324
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 141
XspI CTAG 2 cut(s) 224, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.