Rorug05G0406700

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003704
Physical Location & Seq
Reverse (-)
56060653 .. 56062149
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0406700.1

Sequence Viewer

Length: 825 bp
ATGGTCTCTTTCCTCTTCAAAAACTCTTCTTCTTATCCACACAAACCTGCCCTCATTGATGCTGAGTCCTCTGAAACCCTGTCCTTCTCCCAGCTCAAGTCAATGGTCATCAAGGCTGATACTGCTGTGCTGTTGTACCCTTCGGGTACAACAGGCCTCAGCAAAGGTGTGATTCTGACTCATGGGAATTTCATTGCTTCTTCTCTGATGGTTACGCAAGATCAAGAAGTGGCTGGAAAGATGCACCATTTGTTTCTCTGTGTGTTGCCAATGTTCCACATCTTTGGATTGGCCGTCATCACTTGCGCGCAGCTGCGGAAGGGAAATGCTGTGATTTCGATGTCCAGATTCAATCTGGAGAAAATTTTGATGACTGTTGAGAATTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATAATTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAACCTTTCATCTTTGAAGCATATTGGGTCCGGTGCAGCTCATCTGGGGAAAGAGTTGATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTATGGTATGATAGAAACCTGTGGAATTGTTTCAGTTGAGAATGTGTTGATAAATCTAACCAAAATAAAACCGATAAAAGTTAGAAAAACCTTAAGTAATATGGTCGAGTCTAGAACTTGGTTCTATGTCCTTAAGACGAAATTGCCTCCTCATCTGTGCTTAAAGGATTTTAATGGCAAACGTCTCCCAGGATACAACGACCTTCTTCTTGTGGTAGTAGCACTCCAAACCTCAAGAACAGCGAACTTAGATTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

274

Amino Acids

30.16

Weight (kDa)

9.38

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 39 - 200 1.5e-36 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 55
AccII CGCG 1 cut(s) 308
AciI CCGC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 2 cut(s) 187, 363
AfaI GTAC 3 cut(s) 137, 148, 458
AfiI CCNNNNNNNGG 2 cut(s) 402, 403
AflII CTTAAG 2 cut(s) 655, 695
AgsI TTSAA 3 cut(s) 19, 352, 475
AjnI CCWGG 1 cut(s) 751
AluBI AGCT 3 cut(s) 94, 313, 497
AluI AGCT 3 cut(s) 94, 313, 497
Alw26I GTCTC 2 cut(s) 10, 752
AoxI GGCC 2 cut(s) 154, 291
ApeKI GCWGC 3 cut(s) 310, 313, 494
ApoI RAATTY 2 cut(s) 187, 363
Asp700I GAANNNNTTC 1 cut(s) 592
AspLEI GCGC 2 cut(s) 308, 310
AspS9I GGNCC 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 486
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 300, 322, 506
BccI CCATC 2 cut(s) 202, 511
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 753
BciVI GTATCC 1 cut(s) 749
BcoDI GTCTC 2 cut(s) 10, 752
BfaI CTAG 1 cut(s) 675
BfrI CTTAAG 2 cut(s) 655, 695
BfuAI ACCTGC 1 cut(s) 55
BfuI GTATCC 1 cut(s) 749
BisI GCNGC 3 cut(s) 311, 314, 495
BlsI GCNGC 3 cut(s) 312, 315, 496
Bme1390I CCNGG 1 cut(s) 753
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 49, 231
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 2 cut(s) 158, 558
BpuEI CTTGAG 3 cut(s) 80, 528, 781
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 751
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 403
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 751
BseLI CCNNNNNNNGG 2 cut(s) 402, 403
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 3 cut(s) 54, 172, 572
BsePI GCGCGC 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 536, 702
BseXI GCAGC 3 cut(s) 300, 322, 506
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 156, 293
BsiSI CCGG 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 402, 403
BsmAI GTCTC 2 cut(s) 10, 752
BsmBI CGTCTC 1 cut(s) 752
BsnI GGCC 2 cut(s) 156, 293
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 156, 293
BspCNI CTCAG 3 cut(s) 55, 171, 571
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 55
BspTI CTTAAG 2 cut(s) 655, 695
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 751
BssHII GCGCGC 1 cut(s) 306
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 376, 443
Bst6I CTCTTC 2 cut(s) 20, 31
BstAFI CTTAAG 2 cut(s) 655, 695
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 4 cut(s) 63, 158, 558, 811
BstEII GGTNACC 1 cut(s) 391
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 2 cut(s) 308, 310
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 10, 752
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 753
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 751
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 3 cut(s) 300, 322, 506
BstXI CCANNNNNNTGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 2 cut(s) 156, 293
BtsIMutI CAGTG 1 cut(s) 448
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 2 cut(s) 308, 310
Cfr13I GGNCC 1 cut(s) 486
Csp6I GTAC 3 cut(s) 136, 147, 457
CviAII CATG 1 cut(s) 182
CviJI RGCY 7 cut(s) 94, 116, 156, 233, 293, 313, 497
CviKI_1 RGCY 7 cut(s) 94, 116, 156, 233, 293, 313, 497
CviQI GTAC 3 cut(s) 136, 147, 457
DdeI CTNAG 4 cut(s) 63, 158, 558, 811
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 20, 31
EarI CTCTTC 2 cut(s) 20, 31
Eco147I AGGCCT 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 751
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 1 cut(s) 185
FaiI YATR 8 cut(s) 183, 422, 480, 567, 572, 665, 690, 823
FatI CATG 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 311, 314, 495
Fsp4HI GCNGC 3 cut(s) 311, 314, 495
FspBI CTAG 1 cut(s) 675
GlaI GCGC 2 cut(s) 307, 309
GluI GCNGC 3 cut(s) 311, 314, 495
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 156, 293
HapII CCGG 1 cut(s) 489
HhaI GCGC 2 cut(s) 308, 310
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 2 cut(s) 306, 308
HinP1I GCGC 2 cut(s) 306, 308
HinfI GANTC 5 cut(s) 65, 172, 178, 348, 671
HpaII CCGG 1 cut(s) 489
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 73, 177, 207
Hpy188III TCNNGA 5 cut(s) 224, 345, 356, 675, 798
HpyAV CCTTC 4 cut(s) 94, 150, 313, 776
HpyCH4III ACNGT 2 cut(s) 376, 443
HpyCH4IV ACGT 1 cut(s) 745
HpyCH4V TGCA 3 cut(s) 244, 494, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 4 cut(s) 63, 158, 558, 811
HpySE526I ACGT 1 cut(s) 745
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 2 cut(s) 306, 308
Kzo9I GATC 1 cut(s) 220
Lsp1109I GCAGC 3 cut(s) 300, 322, 506
LweI GCATC 2 cut(s) 49, 231
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 745
MaeIII GTNAC 2 cut(s) 211, 391
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 5 cut(s) 7, 18, 21, 192, 761
MluCI AATT 7 cut(s) 187, 363, 382, 423, 534, 588, 704
MlyI GAGTC 3 cut(s) 74, 172, 680
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 5 cut(s) 450, 656, 696, 725, 735
MspA1I CMGCKG 1 cut(s) 313
MspCI CTTAAG 2 cut(s) 655, 695
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 391
PauI GCGCGC 1 cut(s) 306
PceI AGGCCT 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 172, 348
PkrI GCNGC 3 cut(s) 312, 315, 496
PleI GAGTC 3 cut(s) 73, 172, 679
PpsI GAGTC 3 cut(s) 73, 172, 679
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 751
PspEI GGTNACC 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 486
PteI GCGCGC 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 3 cut(s) 137, 148, 458
RsaNI GTAC 3 cut(s) 136, 147, 457
SaqAI TTAA 5 cut(s) 450, 656, 696, 725, 735
SatI GCNGC 3 cut(s) 311, 314, 495
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 3 cut(s) 74, 172, 680
ScrFI CCNGG 1 cut(s) 753
SfaNI GCATC 2 cut(s) 49, 231
SinI GGWCC 1 cut(s) 486
SmlI CTYRAG 5 cut(s) 95, 543, 655, 695, 796
SmoI CTYRAG 5 cut(s) 95, 543, 655, 695, 796
Sse9I AATT 7 cut(s) 187, 363, 382, 423, 534, 588, 704
SseBI AGGCCT 1 cut(s) 156
SsiI CCGC 1 cut(s) 316
SspMI CTAG 1 cut(s) 675
StuI AGGCCT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 751
TaaI ACNGT 2 cut(s) 376, 443
TaiI ACGT 1 cut(s) 748
TaqI TCGA 2 cut(s) 338, 669
TasI AATT 7 cut(s) 187, 363, 382, 423, 534, 588, 704
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 2 cut(s) 172, 348
Tru1I TTAA 5 cut(s) 450, 656, 696, 725, 735
Tru9I TTAA 5 cut(s) 450, 656, 696, 725, 735
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 3 cut(s) 310, 313, 494
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 2 cut(s) 181, 456
TspRI CASTG 1 cut(s) 448
Vha464I CTTAAG 2 cut(s) 655, 695
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 2 cut(s) 187, 363
XbaI TCTAGA 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.