Rh5CG165000

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003704
Physical Location & Seq
Reverse (-)
15364048 .. 15381754
17707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG165000.1

Sequence Viewer

Length: 348 bp
ATGGGGAGCTCTTCAATTCTGACCCAAGACGAGTTGAAGAAAATCACCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTTCACCTCGGCTCCGGCTCCATCGTCAAACACACCGTGGATCGCTTAAGCGAGCTTTTACAACCTGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATTGACGATGCCGACGAGGTGGACCCCCACCTAAACCTAGTCAAAGGCTGCTGCGGGTACCTCTTGAGAGAGAAAATGGTGGAGGGCGTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

115

Amino Acids

12.64

Weight (kDa)

5.19

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 55 - 112 4.2e-16 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 309
AciI CCGC 2 cut(s) 48, 306
AclWI GGATC 2 cut(s) 126, 232
AcsI RAATTY 2 cut(s) 168, 207
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 1 cut(s) 311
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 15, 37
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 9, 133
AluI AGCT 2 cut(s) 9, 133
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 2 cut(s) 126, 232
ApeKI GCWGC 2 cut(s) 300, 303
ApoI RAATTY 2 cut(s) 168, 207
Asp718I GGTACC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 37, 74
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 287, 290
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 124
BisI GCNGC 2 cut(s) 301, 304
BlsI GCNGC 2 cut(s) 302, 305
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 4 cut(s) 91, 97, 276, 311
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 85, 114
BsaXI ACNNNNNCTCC 3 cut(s) 74, 104, 326
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 85, 114
BseXI GCAGC 2 cut(s) 287, 290
BshNI GGYRCC 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 2 cut(s) 69, 93
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 75, 118, 237, 244
BspACI CCGC 2 cut(s) 48, 306
BspLI GGNNCC 4 cut(s) 91, 97, 276, 311
BspPI GGATC 2 cut(s) 126, 232
BspQI GCTCTTC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 309
BspTI CTTAAG 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 85, 114
BssMI GATC 4 cut(s) 75, 118, 237, 244
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 16
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 4 cut(s) 78, 121, 240, 247
BstMBI GATC 4 cut(s) 75, 118, 237, 244
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 287, 290
BtgI CCRYGG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 9, 90, 96, 133, 300
CviKI_1 RGCY 5 cut(s) 9, 90, 96, 133, 300
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 203
DpnI GATC 4 cut(s) 77, 120, 239, 246
DpnII GATC 4 cut(s) 75, 118, 237, 244
DraIII CACNNNGTG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 301, 304
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 301, 304
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 301, 304
HapII CCGG 2 cut(s) 69, 93
Hin1II CATG 1 cut(s) 76
HinfI GANTC 1 cut(s) 65
HpaII CCGG 2 cut(s) 69, 93
HphI GGTGA 2 cut(s) 37, 74
Hpy166II GTNNAC 2 cut(s) 154, 274
Hpy188I TCNGA 3 cut(s) 21, 167, 175
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 2 cut(s) 154, 274
Hpy99I CGWCG 2 cut(s) 65, 269
HpyCH4III ACNGT 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 1 cut(s) 76
KpnI GGTACC 1 cut(s) 313
Kzo9I GATC 4 cut(s) 75, 118, 237, 244
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 3 cut(s) 6, 95, 101
LpnPI CCDG 4 cut(s) 82, 106, 129, 156
Lsp1109I GCAGC 2 cut(s) 287, 290
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 290
MalI GATC 4 cut(s) 77, 120, 239, 246
MboI GATC 4 cut(s) 75, 118, 237, 244
MboII GAAGA 2 cut(s) 3, 49
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 15, 168, 207
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 95, 233, 251, 262, 323, 328
MseI TTAA 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 2 cut(s) 69, 93
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
NdeII GATC 4 cut(s) 75, 118, 237, 244
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 4 cut(s) 91, 97, 276, 311
NmeAIII GCCGAG 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 255, 264
PkrI GCNGC 2 cut(s) 302, 305
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 4 cut(s) 91, 97, 276, 311
PspPI GGNCC 1 cut(s) 274
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacI GAGCTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 2 cut(s) 301, 304
Sau3AI GATC 4 cut(s) 75, 118, 237, 244
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 124, 316
SmoI CTYRAG 2 cut(s) 124, 316
Sse9I AATT 3 cut(s) 15, 168, 207
SsiI CCGC 2 cut(s) 48, 306
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 3 cut(s) 63, 225, 243
TasI AATT 3 cut(s) 15, 168, 207
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseI GCWGC 2 cut(s) 300, 303
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 2 cut(s) 168, 207
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.