Rh1CG249700

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003704
Physical Location & Seq
Reverse (-)
51228467 .. 51229190
724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG249700.1

Sequence Viewer

Length: 336 bp
ATGACCCAAGACGAGTTGAAGAAAATGGCCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTCGGTCTTAACTCCGGCTCCACCATCAAACACACCGTGGATCGCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTTCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATCGACGGTGCCGACGAGGTAGATCCCCACCTCAACCTAGTCAAAGTCCGCTGCGGCCTGAAAGGGGAAGGTTTTGGAATTGAAGGAAGAGTTGGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

111

Amino Acids

12.05

Weight (kDa)

5.45

Isoelectric Point (pI)

22.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 49 - 95 1.1e-10 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 3 cut(s) 30, 283, 288
AclWI GGATC 3 cut(s) 108, 214, 251
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 2 cut(s) 150, 189
AdeI CACNNNGTG 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 2 cut(s) 19, 317
AjuI GAANNNNNNNTTGG 1 cut(s) 309
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 3 cut(s) 108, 214, 251
AoxI GGCC 2 cut(s) 27, 289
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 150, 189
AsuC2I CCSGG 1 cut(s) 126
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 272
BisI GCNGC 3 cut(s) 30, 286, 289
BlsI GCNGC 3 cut(s) 31, 287, 290
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 79, 244
BmrFI CCNGG 1 cut(s) 126
BplI GAGNNNNNCTC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 2 cut(s) 29, 291
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 3 cut(s) 51, 75, 125
BslI CCNNNNNNNGG 1 cut(s) 298
BsnI GGCC 2 cut(s) 29, 291
Bsp143I GATC 5 cut(s) 57, 100, 219, 226, 256
BspACI CCGC 3 cut(s) 30, 283, 288
BspANI GGCC 2 cut(s) 29, 291
BspLI GGNNCC 2 cut(s) 79, 244
BspPI GGATC 3 cut(s) 108, 214, 251
BspT107I GGYRCC 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 5 cut(s) 57, 100, 219, 226, 256
Bst4CI ACNGT 2 cut(s) 97, 242
Bst6I CTCTTC 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 96
BstKTI GATC 5 cut(s) 60, 103, 222, 229, 259
BstMBI GATC 5 cut(s) 57, 100, 219, 226, 256
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 29, 291
BtgI CCRYGG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 113
CviAII CATG 1 cut(s) 55
CviJI RGCY 4 cut(s) 29, 78, 115, 291
CviKI_1 RGCY 4 cut(s) 29, 78, 115, 291
DdeI CTNAG 1 cut(s) 185
DpnI GATC 5 cut(s) 59, 102, 221, 228, 258
DpnII GATC 5 cut(s) 57, 100, 219, 226, 256
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 30, 286, 289
Fsp4HI GCNGC 3 cut(s) 30, 286, 289
FspBI CTAG 1 cut(s) 272
GluI GCNGC 3 cut(s) 30, 286, 289
HaeIII GGCC 2 cut(s) 29, 291
HapII CCGG 3 cut(s) 51, 75, 125
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 47, 330
HpaII CCGG 3 cut(s) 51, 75, 125
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 149, 157, 335
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 3 cut(s) 47, 242, 251
HpyAV CCTTC 2 cut(s) 296, 311
HpyCH4III ACNGT 2 cut(s) 97, 242
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 5 cut(s) 57, 100, 219, 226, 256
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 64, 88, 138, 305
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 1 cut(s) 272
MalI GATC 5 cut(s) 59, 102, 221, 228, 258
MboI GATC 5 cut(s) 57, 100, 219, 226, 256
MboII GAAGA 3 cut(s) 31, 52, 333
MflI RGATCY 1 cut(s) 256
MluCI AATT 3 cut(s) 150, 189, 312
MlyI GAGTC 2 cut(s) 56, 324
MmeI TCCRAC 2 cut(s) 225, 307
MnlI CCTC 4 cut(s) 215, 233, 244, 275
MseI TTAA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 3 cut(s) 51, 75, 125
MspR9I CCNGG 1 cut(s) 126
NciI CCSGG 1 cut(s) 126
NdeII GATC 5 cut(s) 57, 100, 219, 226, 256
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 79, 244
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 243, 246
PkrI GCNGC 3 cut(s) 31, 287, 290
PleI GAGTC 2 cut(s) 55, 324
PpsI GAGTC 2 cut(s) 55, 324
PspN4I GGNNCC 2 cut(s) 79, 244
PsuI RGATCY 1 cut(s) 256
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 3 cut(s) 30, 286, 289
Sau3AI GATC 5 cut(s) 57, 100, 219, 226, 256
SchI GAGTC 2 cut(s) 56, 324
ScrFI CCNGG 1 cut(s) 126
SetI ASST 7 cut(s) 42, 117, 207, 255, 267, 273, 307
Sse9I AATT 3 cut(s) 150, 189, 312
SsiI CCGC 3 cut(s) 30, 283, 288
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 97, 242
TaqI TCGA 4 cut(s) 45, 207, 225, 237
TaqII GACCGA 1 cut(s) 53
TasI AATT 3 cut(s) 150, 189, 312
TauI GCSGC 2 cut(s) 32, 291
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 183
XapI RAATTY 2 cut(s) 150, 189
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.