Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003153.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

42475 .. 42702

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003153.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgacccaagacgagttgaagaaaatcgccgcctacaaggtcgtcgagtctggcatgatcttcggtctcaactccggctccaccgtcaaacacacagtggatcgcttgggcgagcttttacaaccgggaaaagttcacaacatcatcggaatttccaagaacacccaccaacaattcatctctcttagaatttcattatccaccaacatgaatctgctgatgtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

75

Amino Acids

8.38

Weight (kDa)

9.6

Isoelectric Point (pI)

18.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	150, 189
AdeI	CACNNNGTG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	108
ApoI	RAATTY	2 cut(s)	150, 189
AsuC2I	CCSGG	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
BsiSI	CCGG	2 cut(s)	75, 125
BsmAI	GTCTC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	57, 100
BspACI	CCGC	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	71
BssMI	GATC	2 cut(s)	57, 100
Bst4CI	ACNGT	2 cut(s)	85, 97
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	185
BstKTI	GATC	2 cut(s)	60, 103
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	57, 100
BstSCI	CCNGG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	113
CviAII	CATG	2 cut(s)	55, 208
CviJI	RGCY	2 cut(s)	78, 115
CviKI_1	RGCY	2 cut(s)	78, 115
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	59, 102
DpnII	GATC	2 cut(s)	57, 100
DraIII	CACNNNGTG	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	58, 211
FaiI	YATR	2 cut(s)	56, 209
FatI	CATG	2 cut(s)	54, 207
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HapII	CCGG	2 cut(s)	75, 125
Hin1II	CATG	2 cut(s)	58, 211
HinfI	GANTC	2 cut(s)	47, 211
HpaII	CCGG	2 cut(s)	75, 125
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	85, 97
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	58, 211
Kzo9I	GATC	2 cut(s)	57, 100
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	3 cut(s)	36, 88, 138
MalI	GATC	2 cut(s)	59, 102
MboI	GATC	2 cut(s)	57, 100
MboII	GAAGA	2 cut(s)	31, 52
MluCI	AATT	3 cut(s)	150, 173, 189
MlyI	GAGTC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	2 cut(s)	75, 125
MspR9I	CCNGG	1 cut(s)	126
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	57, 100
NlaIII	CATG	2 cut(s)	58, 211
NlaIV	GGNNCC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	57, 100
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	2 cut(s)	42, 117
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	150, 173, 189
SsiI	CCGC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	85, 97
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	150, 173, 189
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	211
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	3 cut(s)	166, 183, 224
TspRI	CASTG	1 cut(s)	102
XapI	RAATTY	2 cut(s)	150, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.