Rh5BG556400

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003704
Physical Location & Seq
Reverse (-)
88553145 .. 88558446
5302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG556400.1

Sequence Viewer

Length: 939 bp
ATGGCAAAGTTTGCACCGTTCTTGTCTGTTTGCGCTGAAGTTTTGAGGATTAAACATGCTTACGATTTGGTGTTTGGAAATGTGAATGAATATTTTAGGGGTTTGATTGTGGGTGGAATGGGTTTATTAATGGCAAAGTTTGTACATTTCTTATCTGTTTGCGCTGATGGTTTAGGGATTAAACATGCTTCTGATTTGGTGTTTGGAAATGTGAATGAATATTTTAGGGGTTTGATTGTGGGTGGAATGGGCTTATACATGATTTGGCCCAACACGGTTGTCATCCATAGTTACAATGCCATTGGTTTCAAGAAAAGGGAAATGATATTTGTTATTCCACAAGCAATATGCACTAGATATGGACTTGATGTGGGTTCCAACCGATATGTGACGCACAAATGGATCAAACAAGTAAGACCCTTTTCTTTCCTCCTCTATTTCCCAATTTCTGCTTTCAGCTCTTCAATTCTGACCCAAGACGAGTTGAAGAAAATCGCCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTCGGTCTCAACTCCGGCTCCACCGTCAAACACACAGTGGATCGCTTGGGCGAGCTTTTACAACCGGGAAAAGTTCACAACATCATCGGAATTTCCAAGAACACCGACCAACAAGTCATCTCTCTTAGAATTTCATTATCCAACCTCGATGACTACTCGATCCTCGATCTCGCTATCGACGGTGCCGACGAGGTGGATCCCCACCTCAACCTAGGGAAGGTTTTGGAATTGAAGGAAGAGCTGGACTCTGAATTTGTTAGTGTCCTCAAGTCCTTGGGGTTGGATGTGGAGATAAGATCAAAAGAATCAATTGAGCAAACTTTGCCCTCAGAAGTCAAGGCCAAGATTGAAGTCAAGACCAGATTTTTTTCTACTGGGTTCATGAACATGAATGAATCAACATTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

312

Amino Acids

34.78

Weight (kDa)

6.72

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 205 - 249 5.7e-08 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 710
AciI CCGC 1 cut(s) 498
AclWI GGATC 5 cut(s) 410, 576, 682, 719, 732
AcsI RAATTY 3 cut(s) 618, 657, 779
AcuI CTGAAG 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 5 cut(s) 310, 465, 487, 760, 878
AluBI AGCT 3 cut(s) 459, 583, 769
AluI AGCT 3 cut(s) 459, 583, 769
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 5 cut(s) 410, 576, 682, 719, 732
AoxI GGCC 2 cut(s) 266, 867
ApoI RAATTY 3 cut(s) 618, 657, 779
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AseI ATTAAT 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 739
AspLEI GCGC 2 cut(s) 35, 164
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 594
AvrII CCTAGG 1 cut(s) 739
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 710
BccI CCATC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 2 cut(s) 354, 740
BisI GCNGC 1 cut(s) 498
BlnI CCTAGG 1 cut(s) 739
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 4 cut(s) 376, 547, 712, 726
BmrFI CCNGG 1 cut(s) 594
BmrI ACTGGG 1 cut(s) 912
BmuI ACTGGG 1 cut(s) 912
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 1 cut(s) 594
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 739, 801
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse1I ACTGG 1 cut(s) 907
BseDI CCNNGG 2 cut(s) 739, 801
BseGI GGATG 2 cut(s) 282, 817
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 1 cut(s) 422
BshFI GGCC 2 cut(s) 268, 869
BshNI GGYRCC 1 cut(s) 710
BsiSI CCGG 3 cut(s) 519, 543, 593
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 2 cut(s) 268, 869
Bso31I GGTCTC 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 142
Bsp143I GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
BspACI CCGC 1 cut(s) 498
BspANI GGCC 2 cut(s) 268, 869
BspCNI CTCAG 1 cut(s) 869
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 4 cut(s) 376, 547, 712, 726
BspPI GGATC 5 cut(s) 410, 576, 682, 719, 732
BspQI GCTCTTC 2 cut(s) 466, 759
BspT107I GGYRCC 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 539
BsrGI TGTACA 1 cut(s) 142
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 2 cut(s) 739, 801
BssMI GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
BssT1I CCWWGG 2 cut(s) 739, 801
Bst4CI ACNGT 5 cut(s) 18, 277, 553, 565, 710
Bst6I CTCTTC 2 cut(s) 466, 759
BstAPI GCANNNNNTGC 2 cut(s) 11, 850
BstAUI TGTACA 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 2 cut(s) 653, 856
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 2 cut(s) 282, 817
BstHHI GCGC 2 cut(s) 35, 164
BstKTI GATC 7 cut(s) 405, 528, 571, 690, 697, 727, 827
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
BstMWI GCNNNNNNNGC 2 cut(s) 11, 850
BstNSI RCATGY 2 cut(s) 59, 188
BstSCI CCNGG 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
BsuRI GGCC 2 cut(s) 268, 869
BtsCI GGATG 2 cut(s) 282, 817
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 581
CciI TCATGA 1 cut(s) 909
CfoI GCGC 2 cut(s) 35, 164
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 143
CviAII CATG 6 cut(s) 56, 185, 259, 523, 910, 916
CviJI RGCY 7 cut(s) 252, 268, 459, 546, 583, 769, 869
CviKI_1 RGCY 7 cut(s) 252, 268, 459, 546, 583, 769, 869
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 2 cut(s) 653, 856
DpnI GATC 7 cut(s) 404, 527, 570, 689, 696, 726, 826
DpnII GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
DraIII CACNNNGTG 1 cut(s) 565
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
Eam1104I CTCTTC 2 cut(s) 466, 759
EarI CTCTTC 2 cut(s) 466, 759
Eco130I CCWWGG 2 cut(s) 739, 801
Eco31I GGTCTC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoT14I CCWWGG 2 cut(s) 739, 801
ErhI CCWWGG 2 cut(s) 739, 801
FaeI CATG 6 cut(s) 59, 188, 262, 526, 913, 919
FatI CATG 6 cut(s) 55, 184, 258, 522, 909, 915
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 2 cut(s) 269, 824
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 2 cut(s) 354, 740
GlaI GCGC 2 cut(s) 34, 163
GluI GCNGC 1 cut(s) 498
HaeIII GGCC 2 cut(s) 268, 869
HapII CCGG 3 cut(s) 519, 543, 593
HgaI GACGC 1 cut(s) 400
HhaI GCGC 2 cut(s) 35, 164
Hin1II CATG 6 cut(s) 59, 188, 262, 526, 913, 919
Hin6I GCGC 2 cut(s) 33, 162
HinP1I GCGC 2 cut(s) 33, 162
HinfI GANTC 4 cut(s) 515, 773, 833, 923
HpaII CCGG 3 cut(s) 519, 543, 593
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 5 cut(s) 193, 471, 617, 778, 859
Hpy188III TCNNGA 3 cut(s) 310, 883, 910
Hpy8I GTNNAC 1 cut(s) 604
Hpy99I CGWCG 3 cut(s) 515, 710, 719
HpyAV CCTTC 2 cut(s) 739, 754
HpyCH4III ACNGT 5 cut(s) 18, 277, 553, 565, 710
HpyCH4V TGCA 2 cut(s) 14, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 850
HpyF3I CTNAG 2 cut(s) 653, 856
Hsp92II CATG 6 cut(s) 59, 188, 262, 526, 913, 919
HspAI GCGC 2 cut(s) 33, 162
Kzo9I GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
LguI GCTCTTC 2 cut(s) 466, 759
LmnI GCTCC 1 cut(s) 551
LpnPI CCDG 6 cut(s) 532, 556, 606, 755, 888, 901
MaeI CTAG 2 cut(s) 354, 740
MaeIII GTNAC 2 cut(s) 290, 388
MalI GATC 7 cut(s) 404, 527, 570, 689, 696, 726, 826
MboI GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
MboII GAAGA 4 cut(s) 453, 499, 520, 776
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 724
MluCI AATT 7 cut(s) 444, 465, 618, 657, 755, 779, 837
MlyI GAGTC 2 cut(s) 524, 767
MmeI TCCRAC 3 cut(s) 402, 693, 789
MnlI CCTC 9 cut(s) 39, 440, 443, 683, 701, 712, 743, 803, 865
MseI TTAA 3 cut(s) 51, 128, 180
MslI CAYNNNNRTG 2 cut(s) 914, 934
MspI CCGG 3 cut(s) 519, 543, 593
MspR9I CCNGG 1 cut(s) 594
MunI CAATTG 1 cut(s) 837
MwoI GCNNNNNNNGC 2 cut(s) 11, 850
NciI CCSGG 1 cut(s) 594
NdeII GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
NlaIII CATG 6 cut(s) 59, 188, 262, 526, 913, 919
NlaIV GGNNCC 4 cut(s) 376, 547, 712, 726
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 2 cut(s) 59, 188
PagI TCATGA 1 cut(s) 909
PciSI GCTCTTC 2 cut(s) 466, 759
PcsI WCGNNNNNNNCGW 2 cut(s) 711, 714
PfeI GAWTC 2 cut(s) 833, 923
PkrI GCNGC 1 cut(s) 499
PleI GAGTC 2 cut(s) 523, 767
PpsI GAGTC 2 cut(s) 523, 767
PshBI ATTAAT 1 cut(s) 128
PspN4I GGNNCC 4 cut(s) 376, 547, 712, 726
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 724
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 914, 934
SapI GCTCTTC 2 cut(s) 466, 759
SaqAI TTAA 3 cut(s) 51, 128, 180
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 7 cut(s) 402, 525, 568, 687, 694, 724, 824
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 524, 767
ScrFI CCNGG 1 cut(s) 594
SetI ASST 9 cut(s) 461, 510, 585, 675, 723, 735, 741, 750, 771
SmiMI CAYNNNNRTG 2 cut(s) 914, 934
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
Sse9I AATT 7 cut(s) 444, 465, 618, 657, 755, 779, 837
SsiI CCGC 1 cut(s) 498
SspI AATATT 2 cut(s) 92, 221
SspMI CTAG 2 cut(s) 354, 740
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 2 cut(s) 739, 801
TaaI ACNGT 5 cut(s) 18, 277, 553, 565, 710
TaqI TCGA 5 cut(s) 513, 675, 686, 693, 705
TaqII GACCGA 1 cut(s) 521
TasI AATT 7 cut(s) 444, 465, 618, 657, 755, 779, 837
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 2 cut(s) 833, 923
Tru1I TTAA 3 cut(s) 51, 128, 180
Tru9I TTAA 3 cut(s) 51, 128, 180
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 7 cut(s) 102, 231, 651, 898, 926, 932, 936
TspRI CASTG 1 cut(s) 570
VspI ATTAAT 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 3 cut(s) 618, 657, 779
XceI RCATGY 2 cut(s) 59, 188
XmaJI CCTAGG 1 cut(s) 739
XspI CTAG 2 cut(s) 354, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.