Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001687.1

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Reverse (-)

140780 .. 141265

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001687.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgacccaagacgagttgaagaaaatcgccgcctacaaggtcgtcgagtccggcatgatcttcggtctcaactccggctccaccgtcaaacacacagtggatcgcttgggcgagcttttacaaccgggaaaagttcacaacatcatcggaatttccaagaacaccgaccaacaagtcatctctcttagaatttcattatccaacctcgatgactactcgatcctcgatctcgctatcgacggtgccgacgaggttgatccccacctcaacctagtcaaaggccgctgcgggttagaaattcgtgctgggttcaagaacatgaacgaatcaaggattgctgacattttcttcttttgctttttagccgggttcaagaacataaatatgatgaatttctgggttcaagtgttgcaatctagttgttttcttgtctttgaatctcgaatgtttgtttttgtgtctaatcttgatgttgggggtgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

5.55

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	3 cut(s)	30, 283, 288
AclWI	GGATC	3 cut(s)	108, 214, 251
AcsI	RAATTY	4 cut(s)	150, 189, 297, 391
AdeI	CACNNNGTG	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	19, 313, 373, 404, 437
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	108, 214, 251
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	4 cut(s)	150, 189, 297, 391
AsuC2I	CCSGG	2 cut(s)	126, 367
BanI	GGYRCC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcnI	CCSGG	2 cut(s)	126, 367
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	3 cut(s)	272, 417, 484
BisI	GCNGC	3 cut(s)	30, 283, 286
BlsI	GCNGC	3 cut(s)	31, 284, 287
Bme1390I	CCNGG	2 cut(s)	126, 367
BmiI	GGNNCC	2 cut(s)	79, 244
BmrFI	CCNGG	2 cut(s)	126, 367
BpuMI	CCSGG	2 cut(s)	126, 367
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	51, 75, 125, 366
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	57, 100, 219, 226, 256
BspACI	CCGC	3 cut(s)	30, 283, 288
BspANI	GGCC	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	79, 244
BspPI	GGATC	3 cut(s)	108, 214, 251
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	71
BssMI	GATC	5 cut(s)	57, 100, 219, 226, 256
Bst4CI	ACNGT	3 cut(s)	85, 97, 242
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	185
BstKTI	GATC	5 cut(s)	60, 103, 222, 229, 259
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	57, 100, 219, 226, 256
BstSCI	CCNGG	2 cut(s)	124, 365
BstV1I	GCAGC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	113
CviAII	CATG	2 cut(s)	55, 319
CviJI	RGCY	4 cut(s)	78, 115, 282, 365
CviKI_1	RGCY	4 cut(s)	78, 115, 282, 365
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	5 cut(s)	59, 102, 221, 228, 258
DpnII	GATC	5 cut(s)	57, 100, 219, 226, 256
DraIII	CACNNNGTG	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	58, 322
FaiI	YATR	4 cut(s)	56, 320, 380, 386
FatI	CATG	2 cut(s)	54, 318
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	3 cut(s)	30, 283, 286
Fsp4HI	GCNGC	3 cut(s)	30, 283, 286
FspBI	CTAG	3 cut(s)	272, 417, 484
GluI	GCNGC	3 cut(s)	30, 283, 286
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	4 cut(s)	51, 75, 125, 366
Hin1II	CATG	2 cut(s)	58, 322
HinfI	GANTC	3 cut(s)	47, 326, 437
HpaII	CCGG	4 cut(s)	51, 75, 125, 366
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	4 cut(s)	313, 373, 441, 467
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	3 cut(s)	47, 242, 251
HpyCH4III	ACNGT	3 cut(s)	85, 97, 242
HpyCH4V	TGCA	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	58, 322
Kzo9I	GATC	5 cut(s)	57, 100, 219, 226, 256
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	64, 88, 138, 291, 379, 382
Lsp1109I	GCAGC	1 cut(s)	272
MaeI	CTAG	3 cut(s)	272, 417, 484
MalI	GATC	5 cut(s)	59, 102, 221, 228, 258
MboI	GATC	5 cut(s)	57, 100, 219, 226, 256
MboII	GAAGA	3 cut(s)	31, 52, 340
MluCI	AATT	4 cut(s)	150, 189, 297, 391
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	215, 233, 244, 275
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	4 cut(s)	51, 75, 125, 366
MspR9I	CCNGG	2 cut(s)	126, 367
NciI	CCSGG	2 cut(s)	126, 367
NdeII	GATC	5 cut(s)	57, 100, 219, 226, 256
NlaIII	CATG	2 cut(s)	58, 322
NlaIV	GGNNCC	2 cut(s)	79, 244
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 246
PfeI	GAWTC	2 cut(s)	326, 437
PkrI	GCNGC	3 cut(s)	31, 284, 287
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	79, 244
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	3 cut(s)	30, 283, 286
Sau3AI	GATC	5 cut(s)	57, 100, 219, 226, 256
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	126, 367
SetI	ASST	6 cut(s)	42, 117, 207, 255, 267, 273
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	150, 189, 297, 391
SsiI	CCGC	3 cut(s)	30, 283, 288
SspMI	CTAG	3 cut(s)	272, 417, 484
StyD4I	CCNGG	2 cut(s)	124, 365
TaaI	ACNGT	3 cut(s)	85, 97, 242
TaqI	TCGA	6 cut(s)	45, 207, 218, 225, 237, 442
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	4 cut(s)	150, 189, 297, 391
TauI	GCSGC	2 cut(s)	32, 285
TfiI	GAWTC	2 cut(s)	326, 437
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	183, 335, 404
TspRI	CASTG	1 cut(s)	102
XapI	RAATTY	4 cut(s)	150, 189, 297, 391
XspI	CTAG	3 cut(s)	272, 417, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.