Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003704

Physical Location & Seq

Genomic Coordinates Forward (+)

27044367 .. 27050882

Gene Structure 6516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTGAAGCCAGAGGCCCGGAGAGTTCTTGAGGCGCTGAGAGAGATGACGTGGCTGATGGGGTGCTACTCCATTGGCTCGAGCACTATAGCATCCCCTACTTGCATAAAATTGTCTCGTGCAAATTTCAACCAACCGCCACGTAGTCTTGCAAAGTATACACGGGCGATTGAGGTTTCCTTTCCTTCAGGTGTGTTGTCAGGCAAGGGAGGACGAGAACATGAGGTCAACTCTTCAATTCTGACCCAAGACGAGTTGAAGAAAATCGCCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTCGGTCTCGGCTCCGGCTCCACCGTCAAACACACCGTGGATCGCTTGGGTGAGCTTTTACAACCGGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTTCATTATCCAACCTCGATGACTACCGATCCTCGATCTCACTATCGACGGTGCCGACGAAGTGGATCCCCACCTCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

170

Amino Acids

18.57

Weight (kDa)

9.51

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0472401 RchiOBHm_Chr3g0486581 RchiOBHm_Chr4g0414301 RchiOBHm_Chr4g0445751 RchiOBHm_Chr5g0020921 RchiOBHm_Chr7g0196901
rosa_laevigata	RLG00000027729 RLG00000033793
rosa_multiflora	Rmu_sc0000785.1_g000022 Rmu_sc0000920.1_g000002 Rmu_sc0001083.1_g000015 Rmu_sc0001132.1_g000013 Rmu_sc0001687.1_g000019 Rmu_sc0001975.1_g000008 Rmu_sc0002964.1_g000004 Rmu_sc0003153.1_g000012 Rmu_sc0005532.1_g000008 Rmu_ssc0000421.1_g000068
rosa_roxburghii	Rroxscaffold_3G00257750
rosa_rugosa	Rorug05G0406700 Rorug07G0106000
rosa_samantha	Rh1BG197900 Rh1CG249700 Rh1DG225800 Rh3BG202900 Rh3CG193200 Rh3CG200400 Rh3DG172200 Rh5BG556400 Rh5CG165000 Rh5CG579100 Rh6AG276800 Rh6BG324700 Rh7BG287900 Rh7CG419800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	158
AciI	CCGC	2 cut(s)	137, 270
AclWI	GGATC	4 cut(s)	348, 453, 490, 503
AcsI	RAATTY	3 cut(s)	124, 390, 429
AcuI	CTGAAG	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	130, 237, 259
AjiI	CACGTC	1 cut(s)	51
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	120, 311
AlwI	GGATC	4 cut(s)	348, 453, 490, 503
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	3 cut(s)	124, 390, 429
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	19, 366
AsuHPI	GGTGA	2 cut(s)	16, 362
AvaI	CYCGRG	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BcnI	CCSGG	2 cut(s)	19, 366
BcoDI	GTCTC	2 cut(s)	120, 311
BfaI	CTAG	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	19, 366
BmeT110I	CYCGRG	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	4 cut(s)	313, 319, 483, 497
BmrFI	CCNGG	2 cut(s)	19, 366
BmsI	GCATC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	19, 366
BsaAI	YACGTR	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	4 cut(s)	19, 291, 315, 365
BsmAI	GTCTC	2 cut(s)	120, 311
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	5 cut(s)	297, 340, 458, 465, 495
BspACI	CCGC	2 cut(s)	137, 270
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	313, 319, 483, 497
BspPI	GGATC	4 cut(s)	348, 453, 490, 503
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	5 cut(s)	297, 340, 458, 465, 495
BssNAI	GTATAC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	117
Bst1107I	GTATAC	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	325, 337, 481
Bst6I	CTCTTC	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	38, 425
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	5 cut(s)	300, 343, 461, 468, 498
BstMAI	GTCTC	2 cut(s)	120, 311
BstMBI	GATC	5 cut(s)	297, 340, 458, 465, 495
BstSCI	CCNGG	2 cut(s)	17, 364
BstSFI	CTRYAG	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	2 cut(s)	221, 295
CviJI	RGCY	7 cut(s)	10, 17, 55, 78, 312, 318, 355
CviKI_1	RGCY	7 cut(s)	10, 17, 55, 78, 312, 318, 355
DdeI	CTNAG	2 cut(s)	38, 425
DpnI	GATC	5 cut(s)	299, 342, 460, 467, 497
DpnII	GATC	5 cut(s)	297, 340, 458, 465, 495
DraIII	CACNNNGTG	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	79
FaeI	CATG	2 cut(s)	224, 298
FaiI	YATR	5 cut(s)	89, 107, 159, 222, 296
FatI	CATG	2 cut(s)	220, 294
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	511
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	4 cut(s)	19, 291, 315, 365
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	224, 298
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	4 cut(s)	19, 291, 315, 365
HphI	GGTGA	2 cut(s)	16, 362
Hpy166II	GTNNAC	3 cut(s)	159, 229, 376
Hpy188I	TCNGA	3 cut(s)	243, 389, 397
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	159, 229, 376
Hpy99I	CGWCG	3 cut(s)	287, 481, 490
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	3 cut(s)	325, 337, 481
HpyCH4IV	ACGT	2 cut(s)	50, 142
HpyCH4V	TGCA	3 cut(s)	105, 122, 152
HpyF3I	CTNAG	2 cut(s)	38, 425
HpySE526I	ACGT	2 cut(s)	50, 142
Hsp92II	CATG	2 cut(s)	224, 298
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	5 cut(s)	297, 340, 458, 465, 495
LmnI	GCTCC	2 cut(s)	317, 323
LpnPI	CCDG	7 cut(s)	24, 32, 174, 186, 304, 328, 378
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	2 cut(s)	50, 142
MalI	GATC	5 cut(s)	299, 342, 460, 467, 497
MboI	GATC	5 cut(s)	297, 340, 458, 465, 495
MboII	GAAGA	3 cut(s)	225, 271, 292
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	5 cut(s)	110, 124, 237, 390, 429
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	7, 25, 166, 203, 217, 455, 472
MspI	CCGG	4 cut(s)	19, 291, 315, 365
MspR9I	CCNGG	2 cut(s)	19, 366
NciI	CCSGG	2 cut(s)	19, 366
NdeII	GATC	5 cut(s)	297, 340, 458, 465, 495
NlaIII	CATG	2 cut(s)	224, 298
NlaIV	GGNNCC	4 cut(s)	313, 319, 483, 497
NmeAIII	GCCGAG	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	3 cut(s)	393, 482, 485
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	143
PspN4I	GGNNCC	4 cut(s)	313, 319, 483, 497
PspPI	GGNCC	1 cut(s)	16
PspXI	VCTCGAGB	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	495
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	5 cut(s)	297, 340, 458, 465, 495
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	19, 366
SduI	GDGCHC	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	29, 79
SmoI	CTYRAG	2 cut(s)	29, 79
Sse9I	AATT	5 cut(s)	110, 124, 237, 390, 429
SsiI	CCGC	2 cut(s)	137, 270
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	17, 364
TaaI	ACNGT	3 cut(s)	325, 337, 481
TaiI	ACGT	2 cut(s)	53, 145
TaqI	TCGA	5 cut(s)	80, 285, 447, 464, 476
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	5 cut(s)	110, 124, 237, 390, 429
TauI	GCSGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	423
XapI	RAATTY	3 cut(s)	124, 390, 429
XhoI	CTCGAG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.