RchiOBHm_Chr5g0020921

ribose-5-phosphate isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003704
Physical Location & Seq
Reverse (-)
15198942 .. 15199349
408 bp
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UTR
Exon/CDS
Intron
PRQ30099

Sequence Viewer

Length: 408 bp
ATGCACAAATGGATCAAACTAGTAAGACCCTTTTCTTGCCTCCTCTCGTTCCCAATTTCTGGTTTCAGCTCTTCAATTCTGACCCAAGACGAGTTGAAGAAAATCACCGCCTACAAGGTCGTCGAGTCCGGCATGATCTTTCACCTCGGCTCCGGCTCCATCGTCAAACACACCGTGGATCGCTTAAGCGAGCTTTTACAACCTGGAAAAGTTCACAACATCATCGGAATTTCCGAGAACACCCACCAACAAGTCATCTCTCTTAGAATTCCATTATCCAACCTCGATGACTACCCGATCCTCGATCTCGCTATTGACGATGCCGACGAGGTGGACCCCCACCTAAACCTAGTCAAAGGCTGCTGCGGGTACCTCTTGAGAGAGAAAATGGTGGAGGGCGTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
Rib_5-P_isom_A

Protein Analysis

135

Amino Acids

15.04

Weight (kDa)

6.03

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 75 - 132 6.2e-16 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 59
AciI CCGC 2 cut(s) 108, 366
AclWI GGATC 3 cut(s) 20, 186, 292
AcsI RAATTY 2 cut(s) 228, 267
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 59
AflII CTTAAG 1 cut(s) 184
AgsI TTSAA 2 cut(s) 75, 97
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 69, 193
AluI AGCT 2 cut(s) 69, 193
AlwI GGATC 3 cut(s) 20, 186, 292
ApeKI GCWGC 2 cut(s) 360, 363
ApoI RAATTY 2 cut(s) 228, 267
Asp718I GGTACC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 2 cut(s) 97, 134
AvaII GGWCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 347, 350
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 204
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 2 cut(s) 20, 350
BfrI CTTAAG 1 cut(s) 184
BisI GCNGC 2 cut(s) 361, 364
BlsI GCNGC 2 cut(s) 362, 365
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 4 cut(s) 151, 157, 336, 371
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 145, 174
BsaXI ACNNNNNCTCC 3 cut(s) 134, 164, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 145, 174
BseLI CCNNNNNNNGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 347, 350
BshNI GGYRCC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 129, 153
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp143I GATC 5 cut(s) 12, 135, 178, 297, 304
BspACI CCGC 2 cut(s) 108, 366
BspLI GGNNCC 4 cut(s) 151, 157, 336, 371
BspPI GGATC 3 cut(s) 20, 186, 292
BspQI GCTCTTC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 145, 174
BssMI GATC 5 cut(s) 12, 135, 178, 297, 304
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 174
BstKTI GATC 5 cut(s) 15, 138, 181, 300, 307
BstMBI GATC 5 cut(s) 12, 135, 178, 297, 304
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 347, 350
BtgI CCRYGG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 370
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 69, 150, 156, 193, 360
CviKI_1 RGCY 5 cut(s) 69, 150, 156, 193, 360
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 1 cut(s) 263
DpnI GATC 5 cut(s) 14, 137, 180, 299, 306
DpnII GATC 5 cut(s) 12, 135, 178, 297, 304
DraIII CACNNNGTG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 334
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 136
FaiI YATR 1 cut(s) 134
FatI CATG 1 cut(s) 132
FauI CCCGC 1 cut(s) 359
Fnu4HI GCNGC 2 cut(s) 361, 364
Fsp4HI GCNGC 2 cut(s) 361, 364
FspBI CTAG 2 cut(s) 20, 350
GluI GCNGC 2 cut(s) 361, 364
HapII CCGG 2 cut(s) 129, 153
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 125
HpaII CCGG 2 cut(s) 129, 153
HphI GGTGA 2 cut(s) 97, 134
Hpy166II GTNNAC 2 cut(s) 214, 334
Hpy188I TCNGA 3 cut(s) 81, 227, 235
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 2 cut(s) 214, 334
Hpy99I CGWCG 2 cut(s) 125, 329
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 1 cut(s) 136
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 5 cut(s) 12, 135, 178, 297, 304
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 155, 161
LpnPI CCDG 5 cut(s) 45, 142, 166, 189, 216
Lsp1109I GCAGC 2 cut(s) 347, 350
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 20, 350
MalI GATC 5 cut(s) 14, 137, 180, 299, 306
MboI GATC 5 cut(s) 12, 135, 178, 297, 304
MboII GAAGA 2 cut(s) 63, 109
MluCI AATT 4 cut(s) 54, 75, 228, 267
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 8 cut(s) 50, 53, 155, 293, 311, 322, 383, 388
MseI TTAA 1 cut(s) 185
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 2 cut(s) 129, 153
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NdeII GATC 5 cut(s) 12, 135, 178, 297, 304
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 4 cut(s) 151, 157, 336, 371
NmeAIII GCCGAG 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 3 cut(s) 231, 315, 324
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 362, 365
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 4 cut(s) 151, 157, 336, 371
PspPI GGNCC 1 cut(s) 334
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 361, 364
Sau3AI GATC 5 cut(s) 12, 135, 178, 297, 304
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 204
SfaNI GCATC 1 cut(s) 310
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 184, 376
SmoI CTYRAG 2 cut(s) 184, 376
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 4 cut(s) 54, 75, 228, 267
SsiI CCGC 2 cut(s) 108, 366
SspMI CTAG 2 cut(s) 20, 350
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 123, 285, 303
TasI AATT 4 cut(s) 54, 75, 228, 267
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 2 cut(s) 360, 363
Van91I CCANNNNNTGG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 2 cut(s) 228, 267
XspI CTAG 2 cut(s) 20, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.